Wall clock time and date at job start Mon Mar 30 2020 07:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.54836 * 2 1 4 4 C 1.54991 * 110.62061 * 237.11716 * 2 1 3 5 5 C 1.54816 * 102.08981 * 204.47460 * 4 2 1 6 6 C 1.53001 * 110.48677 * 139.68994 * 5 4 2 7 7 C 1.52996 * 109.47096 * 53.30649 * 6 5 4 8 8 C 1.50700 * 115.54852 * 41.74820 * 7 6 5 9 9 H 1.07997 * 119.99975 * 356.83545 * 8 7 6 10 10 C 1.37885 * 119.99858 * 176.83473 * 8 7 6 11 11 N 1.31513 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99935 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47332 * 90.00050 * 12 10 8 14 14 H 1.48502 * 109.47210 * 210.00175 * 12 10 8 15 15 H 1.48502 * 109.47163 * 329.99670 * 12 10 8 16 16 C 1.53006 * 117.50178 * 256.03754 * 7 6 5 17 17 C 1.53002 * 59.99993 * 252.51300 * 16 7 6 18 18 C 1.50696 * 110.48785 * 262.20376 * 5 4 2 19 19 O 1.20826 * 120.00186 * 6.56363 * 18 5 4 20 20 O 1.34233 * 120.00152 * 186.57273 * 18 5 4 21 21 C 1.54094 * 104.18920 * 20.88224 * 5 4 2 22 22 H 1.09004 * 109.88427 * 121.45332 * 21 5 4 23 23 C 1.53004 * 109.87972 * 242.60547 * 21 5 4 24 24 O 1.43744 * 107.29502 * 2.02427 * 21 5 4 25 25 H 1.08997 * 109.46651 * 182.88342 * 1 2 3 26 26 H 1.08999 * 109.47095 * 302.88253 * 1 2 3 27 27 H 1.08994 * 109.47129 * 62.88684 * 1 2 3 28 28 H 1.08999 * 110.90856 * 86.27594 * 4 2 1 29 29 H 1.08995 * 110.93766 * 322.68151 * 4 2 1 30 30 H 1.08998 * 109.47164 * 173.31265 * 6 5 4 31 31 H 1.09002 * 109.47262 * 293.31154 * 6 5 4 32 32 H 0.96998 * 120.00108 * 180.02562 * 11 10 8 33 33 H 1.08997 * 117.49481 * 0.02562 * 16 7 6 34 34 H 1.08999 * 117.49986 * 145.02413 * 16 7 6 35 35 H 1.09000 * 117.49941 * 252.50805 * 17 16 7 36 36 H 1.08998 * 117.50054 * 107.49153 * 17 16 7 37 37 H 0.96698 * 117.00190 * 179.97438 * 20 18 5 38 38 H 1.09001 * 109.47306 * 62.68918 * 23 21 5 39 39 H 1.08995 * 109.47698 * 182.69313 * 23 21 5 40 40 H 1.09007 * 109.46668 * 302.69674 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0759 -0.7876 -1.2182 5 6 3.4796 -1.2156 -0.7251 6 6 3.7870 -2.6490 -1.1630 7 6 3.5860 -2.7746 -2.6745 8 6 4.1036 -1.6228 -3.4969 9 1 4.5325 -0.7603 -3.0085 10 6 4.0295 -1.6700 -4.8730 11 7 3.5067 -2.7201 -5.4677 12 14 4.6717 -0.2425 -5.8925 13 1 6.1050 -0.4663 -6.2100 14 1 3.8944 -0.1461 -7.1541 15 1 4.5261 1.0197 -5.1238 16 6 2.3181 -3.4783 -3.1626 17 6 3.6749 -4.1748 -3.2850 18 6 4.5319 -0.2698 -1.2438 19 8 4.2055 0.7282 -1.8416 20 8 5.8320 -0.5361 -1.0419 21 6 3.3839 -1.1265 0.8103 22 1 3.6045 -2.0981 1.2525 23 6 4.3685 -0.0784 1.3330 24 8 2.0384 -0.7368 1.1328 25 1 -0.3632 -1.0264 0.0517 26 1 -0.3633 0.5579 0.8630 27 1 -0.3633 0.4683 -0.9147 28 1 2.1510 -0.1446 -2.0951 29 1 1.4553 -1.6586 -1.4287 30 1 4.8195 -2.8920 -0.9122 31 1 3.1165 -3.3377 -0.6489 32 1 3.4549 -2.7535 -6.4357 33 1 1.6269 -3.8514 -2.4068 34 1 1.8580 -3.1081 -4.0787 35 1 4.1074 -4.2627 -4.2817 36 1 3.8765 -5.0064 -2.6098 37 1 6.4701 0.0997 -1.3934 38 1 4.0995 0.9015 0.9384 39 1 4.3298 -0.0546 2.4220 40 1 5.3776 -0.3353 1.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686436887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:27 Heat of formation + Delta-G solvation = -101.785943 kcal Electronic energy + Delta-G solvation = -22884.836517 eV Core-core repulsion = 19666.000406 eV Total energy + Delta-G solvation = -3218.836111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94395 -38.51309 -36.67321 -35.47399 -33.08718 -32.22748 -31.41164 -29.19900 -26.58694 -25.52614 -23.83659 -22.95498 -20.96381 -20.39886 -19.40119 -18.93499 -17.30816 -16.69143 -16.57512 -15.59100 -15.08263 -14.72121 -14.35676 -14.14789 -13.54790 -13.28157 -12.93907 -12.69042 -12.45432 -12.36679 -11.82758 -11.76402 -11.59292 -11.49414 -11.17688 -11.06202 -10.91903 -10.69590 -10.55666 -10.40947 -10.24750 -9.96468 -9.85215 -9.68937 -9.43295 -9.24211 -8.77133 -8.22648 -8.02885 -5.97210 -4.03857 2.95073 3.26907 3.35367 3.44722 3.61207 4.11108 4.40433 4.72095 5.04443 5.09880 5.14649 5.31136 5.43532 5.52802 5.58301 5.75034 5.78043 5.89040 5.91401 6.03961 6.13977 6.16735 6.26142 6.33094 6.39916 6.46816 6.59942 6.68471 6.73374 6.84195 7.06404 7.12515 7.20204 7.26672 7.30497 7.69271 7.97568 8.23688 8.43205 8.58330 8.90995 9.53716 10.97570 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.008674 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.125789 B = 3227.084519 C = 3510.707609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 H 0.066 0.934 4 C -0.117 4.117 5 C -0.062 4.062 6 C -0.063 4.063 7 C 0.017 3.983 8 C -0.490 4.490 9 H 0.076 0.924 10 C 0.065 3.935 11 N -0.876 5.876 12 Si 0.883 3.117 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.267 1.267 16 C -0.187 4.187 17 C -0.189 4.189 18 C 0.532 3.468 19 O -0.521 6.521 20 O -0.518 6.518 21 C 0.086 3.914 22 H 0.102 0.898 23 C -0.189 4.189 24 O -0.371 6.371 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.258 0.742 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.039 0.961 37 H 0.400 0.600 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 3.197 10.460 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.084 0.916 4 C -0.154 4.154 5 C -0.063 4.063 6 C -0.100 4.100 7 C 0.016 3.984 8 C -0.527 4.527 9 H 0.093 0.907 10 C -0.137 4.137 11 N -0.514 5.514 12 Si 0.711 3.289 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.191 1.191 16 C -0.225 4.225 17 C -0.227 4.227 18 C 0.377 3.623 19 O -0.410 6.410 20 O -0.329 6.329 21 C 0.028 3.972 22 H 0.120 0.880 23 C -0.247 4.247 24 O -0.290 6.290 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.258 0.742 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.890 3.088 10.460 10.943 hybrid contribution 0.903 1.056 -1.246 1.866 sum 0.013 4.144 9.214 10.103 Atomic orbital electron populations 1.21726 0.93325 1.02808 1.02014 1.23262 0.95024 0.95502 0.85594 0.91566 1.23139 0.92276 1.01454 0.98559 1.21730 0.93465 0.96729 0.94410 1.21193 1.00884 0.90578 0.97356 1.18929 0.98405 0.92533 0.88505 1.21100 1.38873 1.01959 0.90768 0.90663 1.24921 0.95039 0.95718 0.98002 1.70014 1.44331 1.27887 1.09210 0.86686 0.78739 0.83607 0.79881 1.20838 1.21233 1.19137 1.22782 0.90634 1.06799 1.02284 1.22915 1.01927 0.94566 1.03291 1.22226 0.82090 0.84169 0.73805 1.90681 1.82073 1.29328 1.38914 1.84545 1.17989 1.55364 1.75023 1.22745 0.83401 0.98600 0.92449 0.87983 1.22604 1.00519 0.99444 1.02084 1.88856 1.26991 1.73474 1.39708 0.91730 0.92462 0.91030 0.87727 0.89040 0.91554 0.92348 0.93200 0.93965 0.88081 0.86564 0.94228 0.74249 0.92521 0.91691 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.66 37.16 0.36 -1.54 16 2 C 0.06 1.02 3.90 -25.68 -0.10 0.92 16 3 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 4 C -0.12 -2.19 4.33 -24.72 -0.11 -2.29 16 5 C -0.06 -1.14 0.60 -154.13 -0.09 -1.23 16 6 C -0.06 -1.23 4.21 -26.73 -0.11 -1.34 16 7 C 0.02 0.39 1.58 -155.66 -0.25 0.14 16 8 C -0.49 -12.71 7.77 -34.44 -0.27 -12.98 16 9 H 0.08 1.92 2.88 -52.49 -0.15 1.77 16 10 C 0.06 1.75 5.28 -17.82 -0.09 1.65 16 11 N -0.88 -24.01 8.60 55.43 0.48 -23.53 16 12 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.19 -4.46 8.40 -26.73 -0.22 -4.68 16 17 C -0.19 -4.59 9.37 -26.73 -0.25 -4.84 16 18 C 0.53 10.30 2.06 36.00 0.07 10.37 16 19 O -0.52 -11.49 15.03 -18.75 -0.28 -11.77 16 20 O -0.52 -8.56 11.06 -39.27 -0.43 -8.99 16 21 C 0.09 1.36 3.75 -26.16 -0.10 1.26 16 22 H 0.10 1.47 7.68 -51.93 -0.40 1.07 16 23 C -0.19 -2.66 8.36 37.16 0.31 -2.35 16 24 O -0.37 -6.11 10.89 -35.23 -0.38 -6.50 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 2.23 6.74 -51.93 -0.35 1.88 16 29 H 0.09 1.74 6.76 -51.93 -0.35 1.39 16 30 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 31 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.04 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.10 2.68 6.56 -51.93 -0.34 2.34 16 35 H 0.12 3.14 6.01 -51.93 -0.31 2.83 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 5.04 9.10 45.56 0.41 5.46 16 38 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.14 5.99 -51.93 -0.31 0.82 16 LS Contribution 305.89 15.07 4.61 4.61 Total: -1.00 -29.65 305.89 -6.98 -36.63 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.10 Total: 10.08 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.85 Total: -16.90 kcal Atomic # 7 Polarization: -24.01 SS G_CDS: 0.48 Total: -23.53 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.10 Total: -27.26 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.65 -6.98 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686436887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.156 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds