Wall clock time and date at job start Mon Mar 30 2020 07:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.67312 * 2 1 4 4 C 1.55004 * 110.61682 * 237.04084 * 2 1 3 5 5 C 1.54805 * 102.09109 * 204.47199 * 4 2 1 6 6 C 1.53007 * 110.48839 * 139.55609 * 5 4 2 7 7 C 1.53001 * 109.46680 * 59.30353 * 6 5 4 8 8 C 1.50704 * 115.55077 * 59.67768 * 7 6 5 9 9 H 1.07995 * 119.99485 * 1.29674 * 8 7 6 10 10 C 1.37881 * 119.99732 * 181.29433 * 8 7 6 11 11 N 1.31507 * 119.99974 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99518 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47332 * 90.00313 * 12 10 8 14 14 H 1.48504 * 109.46663 * 209.99964 * 12 10 8 15 15 H 1.48499 * 109.47371 * 329.99663 * 12 10 8 16 16 C 1.52999 * 117.49896 * 274.00848 * 7 6 5 17 17 C 1.52999 * 117.49725 * 205.34912 * 7 6 5 18 18 C 1.50700 * 110.48977 * 262.20166 * 5 4 2 19 19 O 1.20828 * 120.00111 * 173.66254 * 18 5 4 20 20 O 1.34222 * 119.99882 * 353.67774 * 18 5 4 21 21 C 1.54097 * 104.18948 * 20.88035 * 5 4 2 22 22 H 1.09003 * 109.88516 * 242.45440 * 21 5 4 23 23 C 1.53009 * 109.88150 * 121.45000 * 21 5 4 24 24 O 1.43746 * 107.29668 * 2.02869 * 21 5 4 25 25 H 1.09001 * 109.47168 * 182.95963 * 1 2 3 26 26 H 1.09003 * 109.47211 * 302.95566 * 1 2 3 27 27 H 1.08994 * 109.47567 * 62.95947 * 1 2 3 28 28 H 1.08994 * 110.90325 * 86.27410 * 4 2 1 29 29 H 1.09002 * 110.93588 * 322.68727 * 4 2 1 30 30 H 1.08998 * 109.47133 * 179.30015 * 6 5 4 31 31 H 1.08995 * 109.46840 * 299.30390 * 6 5 4 32 32 H 0.96999 * 119.99651 * 179.97438 * 11 10 8 33 33 H 1.09004 * 117.50091 * 359.97438 * 16 7 6 34 34 H 1.08994 * 117.49946 * 145.02565 * 16 7 6 35 35 H 1.08996 * 117.50023 * 214.98311 * 17 7 6 36 36 H 1.08997 * 117.49771 * 359.97438 * 17 7 6 37 37 H 0.96704 * 117.00127 * 179.97438 * 20 18 5 38 38 H 1.09003 * 109.46417 * 60.00264 * 23 21 5 39 39 H 1.08993 * 109.47238 * 180.02562 * 23 21 5 40 40 H 1.08996 * 109.47090 * 300.00386 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2173 5 6 3.4795 -1.2166 -0.7237 6 6 3.7855 -2.6518 -1.1570 7 6 3.7292 -2.7468 -2.6830 8 6 4.6934 -1.8580 -3.4256 9 1 5.3775 -1.2270 -2.8777 10 6 4.7021 -1.8505 -4.8043 11 7 3.8687 -2.6186 -5.4713 12 14 5.8978 -0.7493 -5.7248 13 1 7.1633 -1.4872 -5.9683 14 1 5.3011 -0.3478 -7.0240 15 1 6.1795 0.4624 -4.9139 16 6 2.3637 -2.9997 -3.3251 17 6 3.4136 -4.1133 -3.2945 18 6 4.5318 -0.2716 -1.2439 19 8 5.6761 -0.3768 -0.8704 20 8 4.1979 0.6873 -2.1217 21 6 3.3840 -1.1254 0.8116 22 1 4.0873 -0.3801 1.1832 23 6 3.6936 -2.4885 1.4340 24 8 2.0385 -0.7353 1.1337 25 1 -0.3633 -1.0263 0.0531 26 1 -0.3634 0.5591 0.8623 27 1 -0.3634 0.4672 -0.9152 28 1 2.1508 -0.1474 -2.0950 29 1 1.4551 -1.6605 -1.4266 30 1 4.7811 -2.9310 -0.8121 31 1 3.0480 -3.3272 -0.7234 32 1 3.8746 -2.6131 -6.4413 33 1 1.5055 -3.0989 -2.6604 34 1 2.1630 -2.5237 -4.2849 35 1 3.9031 -4.3693 -4.2341 36 1 3.2465 -4.9446 -2.6097 37 1 4.9071 1.2697 -2.4266 38 1 4.7013 -2.7952 1.1539 39 1 3.6237 -2.4165 2.5193 40 1 2.9758 -3.2246 1.0721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686436890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:37 Heat of formation + Delta-G solvation = -107.278593 kcal Electronic energy + Delta-G solvation = -22828.959611 eV Core-core repulsion = 19609.885320 eV Total energy + Delta-G solvation = -3219.074291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73771 -38.53284 -36.68421 -35.38914 -33.32600 -32.33472 -31.39057 -28.83955 -26.92322 -25.29901 -24.35875 -22.21346 -21.34680 -20.40321 -19.75296 -18.51306 -17.19122 -16.77774 -16.29544 -15.51895 -15.14988 -14.83820 -14.61898 -14.15316 -13.64102 -13.33158 -13.05178 -12.59702 -12.40763 -12.17741 -11.90785 -11.80227 -11.60439 -11.27487 -11.16490 -11.04824 -10.86903 -10.78573 -10.60955 -10.40963 -10.33041 -10.12987 -9.94680 -9.60597 -9.40232 -9.32881 -8.81259 -8.28157 -8.06017 -6.01378 -4.06700 2.97807 3.22973 3.30652 3.31700 3.67479 4.02798 4.33697 4.74695 5.01295 5.08041 5.15402 5.26633 5.41714 5.51409 5.61189 5.74800 5.79157 5.84182 5.93663 6.03189 6.06945 6.19476 6.24385 6.32716 6.35263 6.44066 6.49870 6.66638 6.72234 6.78056 7.05316 7.16202 7.22333 7.25218 7.31002 7.65659 7.95253 8.21529 8.41142 8.65117 8.88097 9.48700 10.94049 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.008227 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.136502 B = 3402.587173 C = 3632.286710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 H 0.066 0.934 4 C -0.131 4.131 5 C -0.064 4.064 6 C -0.058 4.058 7 C 0.013 3.987 8 C -0.479 4.479 9 H 0.065 0.935 10 C 0.065 3.935 11 N -0.874 5.874 12 Si 0.892 3.108 13 H -0.282 1.282 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.183 4.183 17 C -0.189 4.189 18 C 0.528 3.472 19 O -0.536 6.536 20 O -0.503 6.503 21 C 0.089 3.911 22 H 0.067 0.933 23 C -0.149 4.149 24 O -0.372 6.372 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.258 0.742 33 H 0.042 0.958 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.041 0.959 37 H 0.398 0.602 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 4.179 8.499 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.007 3.993 3 H 0.084 0.916 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.095 4.095 7 C 0.012 3.988 8 C -0.516 4.516 9 H 0.083 0.917 10 C -0.137 4.137 11 N -0.512 5.512 12 Si 0.720 3.280 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.220 4.220 17 C -0.227 4.227 18 C 0.372 3.628 19 O -0.427 6.427 20 O -0.313 6.313 21 C 0.031 3.969 22 H 0.085 0.915 23 C -0.206 4.206 24 O -0.292 6.292 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.060 0.940 37 H 0.255 0.745 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.719 3.807 8.733 10.632 hybrid contribution 1.314 0.898 -1.144 1.959 sum -3.405 4.705 7.590 9.557 Atomic orbital electron populations 1.21725 0.93246 1.02843 1.02038 1.23244 0.95118 0.95315 0.85671 0.91630 1.23331 0.93504 1.01503 0.98443 1.21639 0.94179 0.96219 0.94492 1.21230 1.01027 0.90064 0.97163 1.18985 0.95667 0.96066 0.88044 1.20717 1.17617 1.22533 0.90741 0.91737 1.24927 0.95550 0.95546 0.97662 1.70011 1.35927 1.38195 1.07093 0.86600 0.81195 0.80907 0.79271 1.20814 1.21227 1.20025 1.22899 0.90970 1.04876 1.03297 1.22790 1.05875 0.90985 1.03055 1.22358 0.88359 0.78041 0.73996 1.90639 1.21832 1.70985 1.59202 1.84532 1.45408 1.43626 1.57686 1.22626 0.84766 0.97587 0.91895 0.91545 1.22010 1.02731 0.95486 1.00392 1.88849 1.27567 1.73569 1.39239 0.91756 0.92408 0.91014 0.87899 0.89173 0.91500 0.91638 0.93114 0.93982 0.87019 0.87646 0.94002 0.74455 0.90490 0.92325 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.66 37.16 0.36 -1.36 16 2 C 0.06 0.94 3.98 -25.67 -0.10 0.84 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.13 -2.23 4.48 -24.72 -0.11 -2.34 16 5 C -0.06 -1.18 0.62 -154.13 -0.10 -1.27 16 6 C -0.06 -1.15 3.05 -26.73 -0.08 -1.23 16 7 C 0.01 0.30 1.79 -155.66 -0.28 0.02 16 8 C -0.48 -12.37 7.47 -34.44 -0.26 -12.63 16 9 H 0.06 1.70 4.53 -52.49 -0.24 1.46 16 10 C 0.07 1.71 5.28 -17.82 -0.09 1.61 16 11 N -0.87 -23.44 8.59 55.43 0.48 -22.96 16 12 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 C -0.18 -4.25 8.11 -26.69 -0.22 -4.46 16 17 C -0.19 -4.54 9.38 -26.69 -0.25 -4.79 16 18 C 0.53 10.61 3.74 36.01 0.13 10.74 16 19 O -0.54 -11.95 16.84 -18.75 -0.32 -12.27 16 20 O -0.50 -9.22 10.92 -39.24 -0.43 -9.65 16 21 C 0.09 1.47 3.65 -26.15 -0.10 1.37 16 22 H 0.07 1.11 7.59 -51.93 -0.39 0.72 16 23 C -0.15 -2.17 8.40 37.16 0.31 -1.86 16 24 O -0.37 -6.04 10.89 -35.23 -0.38 -6.43 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 1.88 6.69 -51.93 -0.35 1.54 16 29 H 0.09 1.58 5.69 -51.93 -0.30 1.28 16 30 H 0.07 1.38 7.07 -51.93 -0.37 1.01 16 31 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.04 0.88 6.76 -51.93 -0.35 0.53 16 34 H 0.11 2.90 6.17 -51.93 -0.32 2.58 16 35 H 0.11 2.82 6.40 -51.93 -0.33 2.48 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 5.96 9.10 45.56 0.41 6.37 16 38 H 0.08 1.13 6.99 -51.93 -0.36 0.76 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.00 6.56 -51.93 -0.34 0.66 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -28.95 304.82 -6.79 -35.75 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.94 Total: 10.64 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.78 Total: -15.36 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.48 Total: -22.96 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.13 Total: -28.34 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.95 -6.79 -35.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686436890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.531 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds