Wall clock time and date at job start Mon Mar 30 2020 07:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.67312 * 2 1 4 4 C 1.55004 * 110.61682 * 237.04084 * 2 1 3 5 5 C 1.54805 * 102.09109 * 204.47199 * 4 2 1 6 6 C 1.53007 * 110.48839 * 139.55609 * 5 4 2 7 7 C 1.53001 * 109.46680 * 59.30353 * 6 5 4 8 8 C 1.50704 * 115.55077 * 59.67768 * 7 6 5 9 9 H 1.07995 * 119.99485 * 1.29674 * 8 7 6 10 10 C 1.37881 * 119.99732 * 181.29433 * 8 7 6 11 11 N 1.31507 * 119.99974 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99518 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47332 * 90.00313 * 12 10 8 14 14 H 1.48504 * 109.46663 * 209.99964 * 12 10 8 15 15 H 1.48499 * 109.47371 * 329.99663 * 12 10 8 16 16 C 1.52999 * 117.49896 * 274.00848 * 7 6 5 17 17 C 1.52999 * 117.49725 * 205.34912 * 7 6 5 18 18 C 1.50700 * 110.48977 * 262.20166 * 5 4 2 19 19 O 1.20828 * 120.00111 * 173.66254 * 18 5 4 20 20 O 1.34222 * 119.99882 * 353.67774 * 18 5 4 21 21 C 1.54097 * 104.18948 * 20.88035 * 5 4 2 22 22 H 1.09003 * 109.88516 * 242.45440 * 21 5 4 23 23 C 1.53009 * 109.88150 * 121.45000 * 21 5 4 24 24 O 1.43746 * 107.29668 * 2.02869 * 21 5 4 25 25 H 1.09001 * 109.47168 * 182.95963 * 1 2 3 26 26 H 1.09003 * 109.47211 * 302.95566 * 1 2 3 27 27 H 1.08994 * 109.47567 * 62.95947 * 1 2 3 28 28 H 1.08994 * 110.90325 * 86.27410 * 4 2 1 29 29 H 1.09002 * 110.93588 * 322.68727 * 4 2 1 30 30 H 1.08998 * 109.47133 * 179.30015 * 6 5 4 31 31 H 1.08995 * 109.46840 * 299.30390 * 6 5 4 32 32 H 0.96999 * 119.99651 * 179.97438 * 11 10 8 33 33 H 1.09004 * 117.50091 * 359.97438 * 16 7 6 34 34 H 1.08994 * 117.49946 * 145.02565 * 16 7 6 35 35 H 1.08996 * 117.50023 * 214.98311 * 17 7 6 36 36 H 1.08997 * 117.49771 * 359.97438 * 17 7 6 37 37 H 0.96704 * 117.00127 * 179.97438 * 20 18 5 38 38 H 1.09003 * 109.46417 * 60.00264 * 23 21 5 39 39 H 1.08993 * 109.47238 * 180.02562 * 23 21 5 40 40 H 1.08996 * 109.47090 * 300.00386 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2173 5 6 3.4795 -1.2166 -0.7237 6 6 3.7855 -2.6518 -1.1570 7 6 3.7292 -2.7468 -2.6830 8 6 4.6934 -1.8580 -3.4256 9 1 5.3775 -1.2270 -2.8777 10 6 4.7021 -1.8505 -4.8043 11 7 3.8687 -2.6186 -5.4713 12 14 5.8978 -0.7493 -5.7248 13 1 7.1633 -1.4872 -5.9683 14 1 5.3011 -0.3478 -7.0240 15 1 6.1795 0.4624 -4.9139 16 6 2.3637 -2.9997 -3.3251 17 6 3.4136 -4.1133 -3.2945 18 6 4.5318 -0.2716 -1.2439 19 8 5.6761 -0.3768 -0.8704 20 8 4.1979 0.6873 -2.1217 21 6 3.3840 -1.1254 0.8116 22 1 4.0873 -0.3801 1.1832 23 6 3.6936 -2.4885 1.4340 24 8 2.0385 -0.7353 1.1337 25 1 -0.3633 -1.0263 0.0531 26 1 -0.3634 0.5591 0.8623 27 1 -0.3634 0.4672 -0.9152 28 1 2.1508 -0.1474 -2.0950 29 1 1.4551 -1.6605 -1.4266 30 1 4.7811 -2.9310 -0.8121 31 1 3.0480 -3.3272 -0.7234 32 1 3.8746 -2.6131 -6.4413 33 1 1.5055 -3.0989 -2.6604 34 1 2.1630 -2.5237 -4.2849 35 1 3.9031 -4.3693 -4.2341 36 1 3.2465 -4.9446 -2.6097 37 1 4.9071 1.2697 -2.4266 38 1 4.7013 -2.7952 1.1539 39 1 3.6237 -2.4165 2.5193 40 1 2.9758 -3.2246 1.0721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686436890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:37 Heat of formation + Delta-G solvation = -124.361592 kcal Electronic energy + Delta-G solvation = -22829.700385 eV Core-core repulsion = 19609.885320 eV Total energy + Delta-G solvation = -3219.815065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19528 -39.96515 -38.45474 -36.95038 -34.81262 -33.64416 -33.19336 -30.00822 -28.55047 -27.15248 -25.72356 -23.58604 -22.87959 -21.94682 -21.43264 -20.13057 -18.76028 -18.29985 -18.04465 -16.95076 -16.78097 -16.23460 -16.15401 -15.63643 -15.34709 -14.82198 -14.50174 -14.07627 -13.64366 -13.62746 -13.27169 -13.07561 -12.96958 -12.88126 -12.77180 -12.59395 -12.46466 -12.32595 -12.21067 -12.09035 -11.87706 -11.71644 -11.61086 -11.23760 -11.06930 -10.76282 -10.59505 -10.14000 -9.96559 -8.00452 -6.10123 1.34642 1.38568 1.43736 1.46620 2.24957 2.40358 2.81214 3.05885 3.39395 3.76406 3.79740 4.00197 4.04016 4.21304 4.34002 4.42131 4.47965 4.50208 4.65707 4.69586 4.73258 4.86137 4.90522 4.92616 5.03013 5.08787 5.17523 5.25186 5.30386 5.34133 5.37319 5.38598 5.52331 5.61190 5.77948 5.95306 5.98557 6.27679 6.43608 6.90432 7.16308 7.46710 8.92738 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.008227 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.136502 B = 3402.587173 C = 3632.286710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.126 4.126 5 C -0.067 4.067 6 C -0.049 4.049 7 C 0.006 3.994 8 C -0.489 4.489 9 H 0.058 0.942 10 C 0.023 3.977 11 N -0.893 5.893 12 Si 0.938 3.062 13 H -0.289 1.289 14 H -0.285 1.285 15 H -0.263 1.263 16 C -0.169 4.169 17 C -0.197 4.197 18 C 0.524 3.476 19 O -0.563 6.563 20 O -0.502 6.502 21 C 0.092 3.908 22 H 0.062 0.938 23 C -0.148 4.148 24 O -0.375 6.375 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.255 0.745 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 4.701 9.793 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 H 0.088 0.912 4 C -0.163 4.163 5 C -0.069 4.069 6 C -0.087 4.087 7 C 0.005 3.995 8 C -0.526 4.526 9 H 0.076 0.924 10 C -0.177 4.177 11 N -0.531 5.531 12 Si 0.765 3.235 13 H -0.216 1.216 14 H -0.211 1.211 15 H -0.187 1.187 16 C -0.207 4.207 17 C -0.235 4.235 18 C 0.371 3.629 19 O -0.456 6.456 20 O -0.313 6.313 21 C 0.034 3.966 22 H 0.080 0.920 23 C -0.205 4.205 24 O -0.295 6.295 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.270 0.730 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.629 4.349 10.025 12.292 hybrid contribution 1.611 0.751 -1.576 2.376 sum -4.018 5.101 8.448 10.655 Atomic orbital electron populations 1.21738 0.91023 1.03306 1.03414 1.23348 0.96832 0.94925 0.84059 0.91163 1.23252 0.92766 1.01414 0.98911 1.21687 0.94342 0.94760 0.96064 1.21146 1.01221 0.91659 0.94636 1.19115 0.95240 0.95078 0.90038 1.20948 1.17858 1.22775 0.91044 0.92409 1.25518 0.96902 0.96744 0.98516 1.70147 1.36955 1.39125 1.06916 0.85861 0.79180 0.79983 0.78448 1.21577 1.21066 1.18725 1.22716 0.91652 1.03906 1.02407 1.22714 1.06424 0.92064 1.02336 1.22764 0.88352 0.78177 0.73654 1.90618 1.23029 1.71801 1.60159 1.84510 1.46096 1.43568 1.57170 1.22604 0.85007 0.98615 0.90348 0.91979 1.22006 1.02549 0.94320 1.01584 1.88853 1.27220 1.73762 1.39628 0.91766 0.90944 0.89766 0.89394 0.89427 0.92419 0.89621 0.93478 0.91365 0.89840 0.90783 0.91738 0.72952 0.90877 0.90390 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.66 71.98 0.70 -2.25 16 2 C 0.07 1.78 3.98 31.28 0.12 1.90 16 3 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.13 -4.09 4.48 31.90 0.14 -3.94 16 5 C -0.07 -2.38 0.62 -51.94 -0.03 -2.41 16 6 C -0.05 -1.91 3.05 30.60 0.09 -1.81 16 7 C 0.01 0.26 1.79 -52.93 -0.09 0.16 16 8 C -0.49 -25.23 7.47 25.60 0.19 -25.04 16 9 H 0.06 3.03 4.53 -2.91 -0.01 3.02 16 10 C 0.02 1.21 5.28 84.66 0.45 1.66 16 11 N -0.89 -48.51 8.59 21.45 0.18 -48.33 16 12 Si 0.94 42.49 29.54 68.60 2.03 44.51 16 13 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 C -0.17 -7.72 8.11 30.62 0.25 -7.47 16 17 C -0.20 -9.39 9.38 30.62 0.29 -9.10 16 18 C 0.52 20.69 3.74 71.24 0.27 20.96 16 19 O -0.56 -24.91 16.84 21.96 0.37 -24.54 16 20 O -0.50 -18.03 10.92 -51.34 -0.56 -18.60 16 21 C 0.09 2.86 3.65 30.97 0.11 2.97 16 22 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 23 C -0.15 -3.95 8.40 71.99 0.61 -3.34 16 24 O -0.37 -11.16 10.89 -148.98 -1.62 -12.78 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.09 3.12 6.69 -2.39 -0.02 3.11 16 29 H 0.09 2.87 5.69 -2.39 -0.01 2.85 16 30 H 0.06 2.32 7.07 -2.39 -0.02 2.30 16 31 H 0.09 2.93 6.43 -2.39 -0.02 2.92 16 32 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 33 H 0.07 2.72 6.76 -2.39 -0.02 2.71 16 34 H 0.08 4.34 6.17 -2.39 -0.01 4.33 16 35 H 0.07 4.01 6.40 -2.39 -0.02 4.00 16 36 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.41 11.96 9.10 -74.05 -0.67 11.28 16 38 H 0.07 2.01 6.99 -2.39 -0.02 1.99 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.90 6.56 -2.39 -0.02 1.88 16 Total: -1.00 -60.91 304.82 3.87 -57.04 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.39 Total: 30.41 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 3.09 Total: -27.72 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.18 Total: -48.33 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -1.81 Total: -55.91 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.91 3.87 -57.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686436890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.327 kcal (2) G-P(sol) polarization free energy of solvation -60.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds