Wall clock time and date at job start Mon Mar 30 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99753 * 2 1 4 4 C 1.52996 * 109.47415 * 293.95819 * 3 2 1 5 5 C 1.52998 * 109.46844 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46883 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47268 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99830 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99799 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47294 * 60.00096 * 11 9 7 13 13 H 1.48500 * 109.46514 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47070 * 299.99815 * 11 9 7 15 15 C 1.46894 * 111.00218 * 123.95742 * 2 1 3 16 16 C 1.53002 * 109.47331 * 66.04645 * 15 2 1 17 17 C 1.50693 * 109.47298 * 180.02562 * 16 15 2 18 18 N 1.29027 * 124.91534 * 90.30653 * 17 16 15 19 19 C 1.31784 * 117.12400 * 180.22644 * 18 17 16 20 20 C 1.33641 * 114.49781 * 359.48088 * 19 18 17 21 21 S 1.70983 * 124.91700 * 269.99604 * 17 16 15 22 22 H 1.09001 * 109.47005 * 296.03837 * 1 2 3 23 23 H 1.09001 * 109.47063 * 56.04224 * 1 2 3 24 24 H 1.09001 * 109.47271 * 176.04016 * 1 2 3 25 25 H 1.09003 * 109.47188 * 53.95823 * 3 2 1 26 26 H 1.09000 * 109.46899 * 173.95072 * 3 2 1 27 27 H 1.08997 * 109.47030 * 299.99704 * 4 3 2 28 28 H 1.08991 * 109.47060 * 60.00203 * 4 3 2 29 29 H 1.09003 * 109.47302 * 299.99724 * 5 4 3 30 30 H 1.08995 * 109.47740 * 59.99929 * 5 4 3 31 31 H 1.08997 * 109.47222 * 299.99636 * 6 5 4 32 32 H 1.09000 * 109.47037 * 60.00291 * 6 5 4 33 33 H 0.97000 * 119.99457 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.47494 * 306.04903 * 15 2 1 35 35 H 1.08998 * 109.47145 * 186.04542 * 15 2 1 36 36 H 1.09003 * 109.47062 * 59.99568 * 16 15 2 37 37 H 1.09006 * 109.46638 * 300.00206 * 16 15 2 38 38 H 1.08002 * 122.75368 * 179.75456 * 19 18 17 39 39 H 1.08001 * 126.03830 * 180.26907 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0576 -1.3182 5 6 2.1802 3.4857 -1.3183 6 6 1.8166 4.1716 -2.6368 7 6 2.3567 5.5786 -2.6367 8 1 2.9048 5.9466 -1.7819 9 6 2.1511 6.3960 -3.7279 10 7 1.4832 5.9480 -4.7685 11 14 2.8211 8.1397 -3.7280 12 1 4.2983 8.1024 -3.5810 13 1 2.4671 8.8058 -5.0071 14 1 2.2300 8.8972 -2.5958 15 6 1.9955 -0.7660 1.1375 16 6 1.6315 -2.2427 0.9702 17 6 2.1711 -3.0284 2.1374 18 7 1.5305 -3.2554 3.2342 19 6 2.1525 -3.9589 4.1587 20 6 3.3824 -4.3563 3.8188 21 16 3.7179 -3.7545 2.1971 22 1 -0.3633 0.4511 0.9234 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0710 25 1 1.5611 1.9274 0.8310 26 1 3.0797 1.3445 0.1083 27 1 2.0657 1.5017 -2.1491 28 1 0.5471 2.0846 -1.4263 29 1 1.7462 4.0418 -0.4873 30 1 3.2644 3.4584 -1.2103 31 1 2.2509 3.6154 -3.4675 32 1 0.7324 4.1990 -2.7451 33 1 1.3389 6.5230 -5.5362 34 1 1.5611 -0.3874 2.0627 35 1 3.0797 -0.6611 1.1755 36 1 2.0658 -2.6213 0.0449 37 1 0.5472 -2.3475 0.9322 38 1 1.7035 -4.1987 5.1112 39 1 4.0523 -4.9427 4.4301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:05 Heat of formation + Delta-G solvation = 26.207930 kcal Electronic energy + Delta-G solvation = -17202.438146 eV Core-core repulsion = 14464.197888 eV Total energy + Delta-G solvation = -2738.240258 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98410 -38.02593 -34.70180 -33.09671 -31.87749 -29.47979 -28.31037 -26.74271 -25.21683 -23.80005 -21.95032 -20.61506 -20.16607 -19.95561 -18.27681 -16.20071 -16.11644 -15.70671 -15.42031 -14.98152 -14.59536 -14.40784 -14.05664 -14.02004 -13.20833 -12.98777 -12.49441 -12.27271 -12.10621 -11.81175 -11.68645 -11.64836 -11.32748 -11.06676 -10.92593 -10.49438 -10.45919 -10.32359 -9.93505 -9.71677 -9.57413 -9.27294 -9.17240 -8.97906 -8.32797 -8.29571 -5.95289 -3.97413 0.38164 1.04961 1.44564 2.51609 3.35836 3.39960 3.42566 3.65907 4.12259 4.49664 4.74869 4.82041 4.85445 4.94074 5.15318 5.22653 5.32516 5.40058 5.44944 5.54990 5.58738 5.72054 5.74317 5.88728 5.92428 6.02584 6.18348 6.26697 6.55310 6.84347 6.99424 7.06536 7.09282 7.26291 7.42842 7.73639 7.90101 8.05992 8.48790 9.09899 9.66191 11.16034 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.048741 B = 0.002433 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.332367 B =11503.303623 C =11719.488412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.541 5.541 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.062 3.938 16 C -0.044 4.044 17 C 0.059 3.941 18 N -0.477 5.477 19 C 0.039 3.961 20 C -0.267 4.267 21 S 0.125 5.875 22 H 0.025 0.975 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.175 0.825 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -21.935 15.800 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.067 4.067 16 C -0.085 4.085 17 C -0.220 4.220 18 N -0.192 5.192 19 C -0.112 4.112 20 C -0.406 4.406 21 S 0.379 5.621 22 H 0.043 0.957 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.192 0.808 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.659 -21.974 14.568 26.498 hybrid contribution -0.281 1.087 1.676 2.018 sum 2.377 -20.887 16.244 26.567 Atomic orbital electron populations 1.22512 0.87431 1.01954 1.01197 1.62004 1.08141 1.14856 1.41531 1.22259 0.99746 0.86511 0.98564 1.21674 1.00906 0.96851 0.95708 1.21601 0.99351 0.92961 1.00848 1.19082 0.96687 0.94611 0.91160 1.21257 1.34803 0.98049 1.01753 0.92855 1.25034 0.95383 0.98452 0.95676 1.69959 1.41004 1.36516 1.06087 0.86671 0.79430 0.84815 0.77155 1.20266 1.21313 1.20306 1.22037 1.00455 0.91643 0.92606 1.20327 1.02593 0.93395 0.92176 1.27151 0.94654 1.01957 0.98210 1.66308 1.35907 1.16032 1.00934 1.21832 0.91856 0.97690 0.99842 1.27110 1.02353 1.10930 1.00229 1.84165 1.18268 1.46885 1.12757 0.95663 0.90401 0.91559 0.95029 0.91007 0.91620 0.92470 0.93723 0.93477 0.96599 0.96753 0.93007 0.94307 0.90599 0.88528 0.88569 0.80823 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.13 60.06 0.55 0.75 16 2 N -0.54 -6.84 4.76 -242.92 -1.16 -8.00 16 3 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 4 C -0.11 -1.95 5.15 -26.73 -0.14 -2.09 16 5 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 11 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.06 0.68 4.94 -3.83 -0.02 0.66 16 16 C -0.04 -0.41 5.72 -27.89 -0.16 -0.57 16 17 C 0.06 0.58 6.64 -13.46 -0.09 0.49 16 18 N -0.48 -5.28 10.54 -11.86 -0.13 -5.40 16 19 C 0.04 0.34 11.35 -19.18 -0.22 0.12 16 20 C -0.27 -1.96 11.37 29.12 0.33 -1.63 16 21 S 0.13 1.02 23.18 -107.50 -2.49 -1.47 16 22 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.08 0.97 6.30 -51.93 -0.33 0.64 16 24 H 0.07 0.66 6.47 -51.93 -0.34 0.33 16 25 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.98 6.47 -51.93 -0.34 0.65 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.91 6.55 -51.93 -0.34 0.57 16 38 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -31.66 333.63 -9.83 -41.50 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -6.35 Total: -4.66 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.45 Total: -17.29 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: -0.55 Total: -40.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.66 -9.83 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.704 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds