Wall clock time and date at job start Mon Mar 30 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99753 * 2 1 4 4 C 1.52996 * 109.47415 * 293.95819 * 3 2 1 5 5 C 1.52998 * 109.46844 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46883 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47268 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99830 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99799 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47294 * 60.00096 * 11 9 7 13 13 H 1.48500 * 109.46514 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47070 * 299.99815 * 11 9 7 15 15 C 1.46894 * 111.00218 * 123.95742 * 2 1 3 16 16 C 1.53002 * 109.47331 * 66.04645 * 15 2 1 17 17 C 1.50693 * 109.47298 * 180.02562 * 16 15 2 18 18 N 1.29027 * 124.91534 * 90.30653 * 17 16 15 19 19 C 1.31784 * 117.12400 * 180.22644 * 18 17 16 20 20 C 1.33641 * 114.49781 * 359.48088 * 19 18 17 21 21 S 1.70983 * 124.91700 * 269.99604 * 17 16 15 22 22 H 1.09001 * 109.47005 * 296.03837 * 1 2 3 23 23 H 1.09001 * 109.47063 * 56.04224 * 1 2 3 24 24 H 1.09001 * 109.47271 * 176.04016 * 1 2 3 25 25 H 1.09003 * 109.47188 * 53.95823 * 3 2 1 26 26 H 1.09000 * 109.46899 * 173.95072 * 3 2 1 27 27 H 1.08997 * 109.47030 * 299.99704 * 4 3 2 28 28 H 1.08991 * 109.47060 * 60.00203 * 4 3 2 29 29 H 1.09003 * 109.47302 * 299.99724 * 5 4 3 30 30 H 1.08995 * 109.47740 * 59.99929 * 5 4 3 31 31 H 1.08997 * 109.47222 * 299.99636 * 6 5 4 32 32 H 1.09000 * 109.47037 * 60.00291 * 6 5 4 33 33 H 0.97000 * 119.99457 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.47494 * 306.04903 * 15 2 1 35 35 H 1.08998 * 109.47145 * 186.04542 * 15 2 1 36 36 H 1.09003 * 109.47062 * 59.99568 * 16 15 2 37 37 H 1.09006 * 109.46638 * 300.00206 * 16 15 2 38 38 H 1.08002 * 122.75368 * 179.75456 * 19 18 17 39 39 H 1.08001 * 126.03830 * 180.26907 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0576 -1.3182 5 6 2.1802 3.4857 -1.3183 6 6 1.8166 4.1716 -2.6368 7 6 2.3567 5.5786 -2.6367 8 1 2.9048 5.9466 -1.7819 9 6 2.1511 6.3960 -3.7279 10 7 1.4832 5.9480 -4.7685 11 14 2.8211 8.1397 -3.7280 12 1 4.2983 8.1024 -3.5810 13 1 2.4671 8.8058 -5.0071 14 1 2.2300 8.8972 -2.5958 15 6 1.9955 -0.7660 1.1375 16 6 1.6315 -2.2427 0.9702 17 6 2.1711 -3.0284 2.1374 18 7 1.5305 -3.2554 3.2342 19 6 2.1525 -3.9589 4.1587 20 6 3.3824 -4.3563 3.8188 21 16 3.7179 -3.7545 2.1971 22 1 -0.3633 0.4511 0.9234 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0710 25 1 1.5611 1.9274 0.8310 26 1 3.0797 1.3445 0.1083 27 1 2.0657 1.5017 -2.1491 28 1 0.5471 2.0846 -1.4263 29 1 1.7462 4.0418 -0.4873 30 1 3.2644 3.4584 -1.2103 31 1 2.2509 3.6154 -3.4675 32 1 0.7324 4.1990 -2.7451 33 1 1.3389 6.5230 -5.5362 34 1 1.5611 -0.3874 2.0627 35 1 3.0797 -0.6611 1.1755 36 1 2.0658 -2.6213 0.0449 37 1 0.5472 -2.3475 0.9322 38 1 1.7035 -4.1987 5.1112 39 1 4.0523 -4.9427 4.4301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:04 Heat of formation + Delta-G solvation = 6.645952 kcal Electronic energy + Delta-G solvation = -17203.286417 eV Core-core repulsion = 14464.197888 eV Total energy + Delta-G solvation = -2739.088530 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65483 -39.06100 -36.35604 -34.60485 -33.31631 -30.61701 -29.56789 -27.82079 -26.56560 -25.02083 -23.20581 -21.87139 -21.56624 -20.81664 -18.93934 -18.40642 -16.97429 -16.75189 -16.50511 -16.19163 -15.94160 -15.64696 -14.99360 -14.91994 -14.39819 -14.26587 -13.85671 -13.57330 -13.47483 -13.11367 -12.96022 -12.77403 -12.57172 -12.40747 -12.28717 -12.19398 -11.95991 -11.85646 -11.31575 -11.25130 -10.99862 -10.61432 -10.53590 -10.35919 -9.83178 -9.33296 -8.18501 -6.29908 -0.25525 0.43333 0.82367 1.40145 1.43615 1.51538 1.85915 2.41834 2.80256 3.14033 3.35664 3.92439 4.04046 4.10949 4.18617 4.22259 4.40303 4.47985 4.54976 4.56278 4.58704 4.62382 4.70943 4.81527 4.87584 4.94819 4.97645 5.12312 5.24800 5.26380 5.29914 5.39209 5.57068 5.79826 5.88566 6.05927 6.09230 6.27624 6.78603 6.87511 7.39178 8.93161 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.048741 B = 0.002433 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.332367 B =11503.303623 C =11719.488412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.547 5.547 3 C 0.065 3.935 4 C -0.103 4.103 5 C -0.097 4.097 6 C 0.023 3.977 7 C -0.545 4.545 8 H 0.060 0.940 9 C -0.003 4.003 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.068 3.932 16 C -0.037 4.037 17 C 0.037 3.963 18 N -0.506 5.506 19 C 0.017 3.983 20 C -0.255 4.255 21 S 0.143 5.857 22 H 0.025 0.975 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.052 0.948 31 H -0.010 1.010 32 H -0.012 1.012 33 H 0.263 0.737 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.194 0.806 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 -22.362 17.209 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.271 5.271 3 C -0.062 4.062 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.014 4.014 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.201 4.201 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.061 4.061 16 C -0.078 4.078 17 C -0.241 4.241 18 N -0.221 5.221 19 C -0.133 4.133 20 C -0.394 4.394 21 S 0.396 5.604 22 H 0.043 0.957 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.009 0.991 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.210 0.790 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.836 -22.415 15.992 27.801 hybrid contribution -0.641 1.145 1.250 1.812 sum 3.195 -21.271 17.242 27.567 Atomic orbital electron populations 1.22532 0.86962 1.02935 1.00666 1.61961 1.08654 1.13853 1.42606 1.22059 1.00317 0.87365 0.96483 1.21490 1.00393 0.94809 0.97379 1.21404 0.99808 0.94674 0.97628 1.19013 0.94678 0.94353 0.93319 1.21721 1.35077 0.99325 1.02184 0.92224 1.26024 0.95527 1.03373 0.95162 1.70099 1.42152 1.38371 1.06822 0.85491 0.79125 0.78858 0.77518 1.19073 1.20805 1.19190 1.22006 1.00547 0.92194 0.91367 1.20227 1.02514 0.92417 0.92629 1.27149 0.95757 1.02948 0.98220 1.66303 1.37200 1.16903 1.01710 1.22192 0.92592 0.98087 1.00407 1.27499 1.02181 1.09902 0.99843 1.84080 1.16815 1.46223 1.13276 0.95657 0.91501 0.89804 0.94920 0.90182 0.92357 0.92824 0.93364 0.92916 0.99142 0.99319 0.92783 0.95131 0.90113 0.87741 0.88862 0.78966 0.77766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.13 127.69 1.17 1.55 16 2 N -0.55 -13.26 4.76 -922.46 -4.39 -17.65 16 3 C 0.07 1.80 4.96 86.30 0.43 2.23 16 4 C -0.10 -3.52 5.15 30.59 0.16 -3.37 16 5 C -0.10 -4.04 5.15 30.59 0.16 -3.88 16 6 C 0.02 1.27 4.97 29.85 0.15 1.42 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 10 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 11 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 C 0.07 1.40 4.94 86.31 0.43 1.83 16 16 C -0.04 -0.66 5.72 29.85 0.17 -0.49 16 17 C 0.04 0.69 6.64 88.52 0.59 1.28 16 18 N -0.51 -10.70 10.54 -191.45 -2.02 -12.72 16 19 C 0.02 0.27 11.35 83.66 0.95 1.22 16 20 C -0.26 -3.15 11.37 66.78 0.76 -2.39 16 21 S 0.14 2.06 23.18 -56.49 -1.31 0.75 16 22 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.07 1.66 6.30 -2.39 -0.02 1.64 16 24 H 0.08 1.59 6.47 -2.39 -0.02 1.57 16 25 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 26 H 0.08 2.08 7.93 -2.39 -0.02 2.06 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.86 6.47 -2.39 -0.02 1.85 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.08 1.57 7.93 -2.39 -0.02 1.55 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.70 6.55 -2.38 -0.02 1.68 16 38 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -68.02 333.63 1.24 -66.78 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.01 Total: 5.54 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 5.65 Total: -31.88 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -6.13 Total: -88.11 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.31 Total: 0.75 kcal Total: -68.02 1.24 -66.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.426 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds