Wall clock time and date at job start Mon Mar 30 2020 07:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48505 * 109.47044 * 270.00268 * 3 2 1 5 5 H 1.48497 * 109.47411 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47276 * 149.99959 * 3 2 1 7 7 C 1.37879 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00550 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99465 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46874 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47062 * 304.99610 * 12 11 10 14 14 C 1.50697 * 109.47652 * 64.99351 * 12 11 10 15 15 O 1.20830 * 119.99526 * 30.60849 * 14 12 11 16 16 O 1.34224 * 120.00624 * 210.60353 * 14 12 11 17 17 C 1.53000 * 109.46970 * 185.00083 * 12 11 10 18 18 C 1.54240 * 108.89794 * 68.24529 * 17 12 11 19 19 C 1.50476 * 108.52411 * 159.26660 * 18 17 12 20 20 C 1.54073 * 112.49888 * 94.14982 * 19 18 17 21 21 C 1.54066 * 112.81345 * 318.28120 * 20 19 18 22 22 C 1.50471 * 112.49683 * 318.28547 * 21 20 19 23 23 C 1.45542 * 108.89026 * 305.35826 * 17 12 11 24 24 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47062 * 60.00500 * 9 7 2 26 26 H 1.08990 * 109.47394 * 299.99835 * 9 7 2 27 27 H 1.08998 * 109.46770 * 59.99839 * 10 9 7 28 28 H 1.08998 * 109.47029 * 300.00522 * 10 9 7 29 29 H 1.09006 * 109.46625 * 299.99846 * 11 10 9 30 30 H 1.08997 * 109.47089 * 59.99892 * 11 10 9 31 31 H 0.96698 * 117.00312 * 180.02562 * 16 14 12 32 32 H 1.09004 * 108.87409 * 186.75675 * 17 12 11 33 33 H 1.09007 * 109.62736 * 278.97377 * 18 17 12 34 34 H 1.08995 * 109.62709 * 39.55343 * 18 17 12 35 35 H 1.08997 * 108.87405 * 333.37088 * 19 18 17 36 36 H 1.09003 * 108.87484 * 214.92799 * 19 18 17 37 37 H 1.08999 * 108.81138 * 197.42475 * 20 19 18 38 38 H 1.09001 * 108.72289 * 79.08484 * 20 19 18 39 39 H 1.08999 * 108.87178 * 197.50731 * 21 20 19 40 40 H 1.08996 * 108.79826 * 79.01162 * 21 20 19 41 41 H 1.08995 * 109.62925 * 334.44236 * 22 21 20 42 42 H 1.09002 * 109.62802 * 213.86562 * 22 21 20 43 43 H 1.08995 * 108.89932 * 303.43912 * 23 17 12 44 44 H 1.08997 * 108.89251 * 61.94194 * 23 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 6 6.0616 -4.0789 -0.0015 13 1 5.6270 -4.6183 0.8402 14 6 5.6629 -4.7524 -1.2893 15 8 5.5556 -4.1029 -2.3025 16 8 5.4270 -6.0735 -1.3109 17 6 7.5864 -4.0808 0.1243 18 6 7.9722 -3.5806 1.5315 19 6 9.3683 -4.0499 1.8395 20 6 10.4359 -2.9970 1.4850 21 6 10.1592 -2.2945 0.1421 22 6 9.6898 -3.2498 -0.9215 23 6 8.1474 -3.2518 -0.9322 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8910 27 1 3.6579 -3.1505 -0.8907 28 1 3.6586 -3.1502 0.8892 29 1 5.9149 -2.1226 -0.8910 30 1 5.9149 -2.1225 0.8890 31 1 5.1744 -6.4606 -2.1602 32 1 7.9491 -5.1014 0.0023 33 1 7.9385 -2.4913 1.5549 34 1 7.2785 -3.9871 2.2674 35 1 9.5678 -4.9592 1.2726 36 1 9.4371 -4.2776 2.9033 37 1 11.4083 -3.4866 1.4318 38 1 10.4633 -2.2468 2.2753 39 1 11.0747 -1.8104 -0.1978 40 1 9.3941 -1.5333 0.2950 41 1 10.0558 -4.2524 -0.7005 42 1 10.0623 -2.9271 -1.8937 43 1 7.8017 -3.6260 -1.8958 44 1 7.7922 -2.2292 -0.8046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688453034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:12 Heat of formation + Delta-G solvation = -139.777523 kcal Electronic energy + Delta-G solvation = -21553.177780 eV Core-core repulsion = 18468.527324 eV Total energy + Delta-G solvation = -3084.650455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82824 -38.95081 -36.20906 -35.25080 -33.53978 -32.26203 -31.82916 -29.31378 -26.49054 -24.91714 -24.13592 -23.04098 -21.22486 -20.15612 -19.48803 -19.18628 -17.93179 -16.68901 -16.39320 -16.16496 -15.27366 -14.88800 -14.67867 -14.21357 -14.04472 -13.96921 -13.15634 -13.12618 -12.98255 -12.62515 -12.48313 -12.24691 -11.96200 -11.73507 -11.45654 -11.26769 -11.06175 -10.98766 -10.85504 -10.71246 -10.55903 -10.43173 -10.41174 -10.28839 -9.96046 -9.81812 -9.64815 -9.42002 -9.11188 -8.48640 -5.99396 -3.96692 2.39349 3.17699 3.34796 3.41317 3.45255 4.41878 4.47661 4.49901 4.67240 4.84647 4.95124 4.96995 5.13207 5.15987 5.24653 5.30216 5.34918 5.44979 5.54762 5.63518 5.65688 5.76182 5.87631 5.89701 5.96896 6.02971 6.05084 6.07798 6.08646 6.16343 6.25667 6.27773 6.33880 6.44996 6.59745 6.66208 6.76282 6.97828 7.36699 7.50542 7.85443 8.06793 8.59944 9.05806 9.63559 11.14363 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.004917 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.675760 B = 5693.470149 C = 6527.539302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.107 4.107 11 C -0.113 4.113 12 C -0.078 4.078 13 H 0.101 0.899 14 C 0.483 3.517 15 O -0.505 6.505 16 O -0.522 6.522 17 C -0.068 4.068 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.129 4.129 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.405 0.595 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.757 -10.078 1.763 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.088 0.912 9 C -0.049 4.049 10 C -0.144 4.144 11 C -0.150 4.150 12 C -0.097 4.097 13 H 0.120 0.880 14 C 0.325 3.675 15 O -0.392 6.392 16 O -0.334 6.334 17 C -0.087 4.087 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.685 -9.598 1.862 23.787 hybrid contribution 0.016 0.596 -0.665 0.893 sum 21.702 -9.002 1.198 23.525 Atomic orbital electron populations 1.69922 1.06311 1.26789 1.51516 1.25039 0.94727 0.99173 0.94644 0.86766 0.80342 0.83601 0.78514 1.20316 1.21458 1.18983 1.21173 0.89672 0.94376 1.50408 0.91212 1.19539 0.97014 0.92238 0.96140 1.21532 0.91772 1.00259 1.00855 1.21820 0.98173 0.91941 1.03111 1.21365 0.97186 0.98074 0.93075 0.88043 1.23598 0.72611 0.79635 0.91662 1.90720 1.47412 1.65026 1.36009 1.84558 1.81174 1.25379 1.42244 1.20036 0.91767 1.00488 0.96379 1.21421 0.96306 1.01963 0.95163 1.21322 0.94590 0.98680 1.00916 1.21914 0.98291 0.98136 0.97055 1.21364 1.01134 0.98614 0.94722 1.21289 0.95470 0.99883 0.98488 1.20755 0.95202 1.01803 0.98881 0.92827 0.96673 0.97042 0.93017 0.92867 0.90610 0.90632 0.73732 0.91082 0.90845 0.91249 0.92164 0.92264 0.92634 0.92381 0.92635 0.91736 0.91911 0.92095 0.91742 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.69 13.96 55.43 0.77 -27.92 16 2 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.34 9.66 -34.44 -0.33 -15.67 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.11 -2.18 4.95 -26.73 -0.13 -2.31 16 11 C -0.11 -1.80 3.57 -26.73 -0.10 -1.90 16 12 C -0.08 -1.02 2.00 -91.77 -0.18 -1.20 16 13 H 0.10 1.24 7.94 -51.93 -0.41 0.83 16 14 C 0.48 7.03 5.79 36.00 0.21 7.24 16 15 O -0.50 -8.94 15.32 -18.75 -0.29 -9.23 16 16 O -0.52 -6.19 13.42 -39.24 -0.53 -6.71 16 17 C -0.07 -0.73 1.48 -93.49 -0.14 -0.86 16 18 C -0.11 -1.05 4.28 -27.34 -0.12 -1.17 16 19 C -0.12 -0.96 5.31 -27.43 -0.15 -1.11 16 20 C -0.12 -0.93 5.85 -25.61 -0.15 -1.08 16 21 C -0.12 -1.06 5.32 -27.44 -0.15 -1.20 16 22 C -0.11 -1.06 5.61 -27.34 -0.15 -1.21 16 23 C -0.13 -1.45 3.90 -29.60 -0.12 -1.57 16 24 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 25 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.05 1.13 7.07 -51.93 -0.37 0.76 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.28 6.20 -51.93 -0.32 0.96 16 30 H 0.08 1.10 6.96 -51.93 -0.36 0.74 16 31 H 0.40 3.18 9.10 45.56 0.41 3.59 16 32 H 0.07 0.71 7.45 -51.93 -0.39 0.33 16 33 H 0.07 0.74 6.41 -51.92 -0.33 0.41 16 34 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 35 H 0.06 0.48 6.63 -51.93 -0.34 0.14 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 41 H 0.06 0.55 6.98 -51.93 -0.36 0.19 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 44 H 0.07 0.92 5.66 -51.93 -0.29 0.62 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -33.54 329.25 -8.20 -41.74 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.74 Total: 0.08 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.71 Total: -20.60 kcal Atomic # 7 Polarization: -28.69 SS G_CDS: 0.77 Total: -27.92 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.81 Total: -15.94 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.54 -8.20 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688453034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.038 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds