Wall clock time and date at job start Mon Mar 30 2020 07:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48505 * 109.47044 * 270.00268 * 3 2 1 5 5 H 1.48497 * 109.47411 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47276 * 149.99959 * 3 2 1 7 7 C 1.37879 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00550 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99465 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46874 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47062 * 304.99610 * 12 11 10 14 14 C 1.50697 * 109.47652 * 64.99351 * 12 11 10 15 15 O 1.20830 * 119.99526 * 30.60849 * 14 12 11 16 16 O 1.34224 * 120.00624 * 210.60353 * 14 12 11 17 17 C 1.53000 * 109.46970 * 185.00083 * 12 11 10 18 18 C 1.54240 * 108.89794 * 68.24529 * 17 12 11 19 19 C 1.50476 * 108.52411 * 159.26660 * 18 17 12 20 20 C 1.54073 * 112.49888 * 94.14982 * 19 18 17 21 21 C 1.54066 * 112.81345 * 318.28120 * 20 19 18 22 22 C 1.50471 * 112.49683 * 318.28547 * 21 20 19 23 23 C 1.45542 * 108.89026 * 305.35826 * 17 12 11 24 24 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47062 * 60.00500 * 9 7 2 26 26 H 1.08990 * 109.47394 * 299.99835 * 9 7 2 27 27 H 1.08998 * 109.46770 * 59.99839 * 10 9 7 28 28 H 1.08998 * 109.47029 * 300.00522 * 10 9 7 29 29 H 1.09006 * 109.46625 * 299.99846 * 11 10 9 30 30 H 1.08997 * 109.47089 * 59.99892 * 11 10 9 31 31 H 0.96698 * 117.00312 * 180.02562 * 16 14 12 32 32 H 1.09004 * 108.87409 * 186.75675 * 17 12 11 33 33 H 1.09007 * 109.62736 * 278.97377 * 18 17 12 34 34 H 1.08995 * 109.62709 * 39.55343 * 18 17 12 35 35 H 1.08997 * 108.87405 * 333.37088 * 19 18 17 36 36 H 1.09003 * 108.87484 * 214.92799 * 19 18 17 37 37 H 1.08999 * 108.81138 * 197.42475 * 20 19 18 38 38 H 1.09001 * 108.72289 * 79.08484 * 20 19 18 39 39 H 1.08999 * 108.87178 * 197.50731 * 21 20 19 40 40 H 1.08996 * 108.79826 * 79.01162 * 21 20 19 41 41 H 1.08995 * 109.62925 * 334.44236 * 22 21 20 42 42 H 1.09002 * 109.62802 * 213.86562 * 22 21 20 43 43 H 1.08995 * 108.89932 * 303.43912 * 23 17 12 44 44 H 1.08997 * 108.89251 * 61.94194 * 23 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 6 6.0616 -4.0789 -0.0015 13 1 5.6270 -4.6183 0.8402 14 6 5.6629 -4.7524 -1.2893 15 8 5.5556 -4.1029 -2.3025 16 8 5.4270 -6.0735 -1.3109 17 6 7.5864 -4.0808 0.1243 18 6 7.9722 -3.5806 1.5315 19 6 9.3683 -4.0499 1.8395 20 6 10.4359 -2.9970 1.4850 21 6 10.1592 -2.2945 0.1421 22 6 9.6898 -3.2498 -0.9215 23 6 8.1474 -3.2518 -0.9322 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8910 27 1 3.6579 -3.1505 -0.8907 28 1 3.6586 -3.1502 0.8892 29 1 5.9149 -2.1226 -0.8910 30 1 5.9149 -2.1225 0.8890 31 1 5.1744 -6.4606 -2.1602 32 1 7.9491 -5.1014 0.0023 33 1 7.9385 -2.4913 1.5549 34 1 7.2785 -3.9871 2.2674 35 1 9.5678 -4.9592 1.2726 36 1 9.4371 -4.2776 2.9033 37 1 11.4083 -3.4866 1.4318 38 1 10.4633 -2.2468 2.2753 39 1 11.0747 -1.8104 -0.1978 40 1 9.3941 -1.5333 0.2950 41 1 10.0558 -4.2524 -0.7005 42 1 10.0623 -2.9271 -1.8937 43 1 7.8017 -3.6260 -1.8958 44 1 7.7922 -2.2292 -0.8046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688453034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:12 Heat of formation + Delta-G solvation = -159.936553 kcal Electronic energy + Delta-G solvation = -21554.051941 eV Core-core repulsion = 18468.527324 eV Total energy + Delta-G solvation = -3085.524617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89019 -39.84146 -37.31634 -36.58588 -35.18473 -33.62969 -32.96237 -30.69918 -28.02882 -25.65693 -24.99522 -24.70916 -22.18011 -21.96935 -20.33410 -20.07102 -19.03210 -18.85930 -17.53584 -17.15213 -16.31159 -16.20103 -15.93943 -15.45049 -15.29482 -14.89172 -14.82612 -14.20069 -14.02424 -13.87290 -13.70570 -13.50789 -13.02505 -12.96236 -12.88808 -12.58256 -12.46017 -12.27259 -12.00469 -11.86120 -11.72775 -11.44263 -11.43042 -11.33262 -11.20918 -11.18119 -11.07778 -11.01003 -10.84750 -10.77809 -8.31018 -6.35255 1.26102 1.34618 1.36280 1.48792 2.18310 2.35335 3.04355 3.56884 3.58814 3.87446 3.95729 4.13693 4.19576 4.29167 4.39588 4.42052 4.48873 4.49036 4.52750 4.60733 4.65226 4.77063 4.86799 4.98245 5.06869 5.09004 5.11025 5.14198 5.19995 5.25084 5.33073 5.40084 5.41467 5.43373 5.48096 5.49990 5.59475 5.61424 5.65935 5.66422 5.69663 6.27134 6.72275 7.03951 7.29349 8.86204 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.004917 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.675760 B = 5693.470149 C = 6527.539302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.102 4.102 12 C -0.076 4.076 13 H 0.116 0.884 14 C 0.482 3.518 15 O -0.544 6.544 16 O -0.515 6.515 17 C -0.059 4.059 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.127 4.127 24 H 0.267 0.733 25 H 0.028 0.972 26 H 0.010 0.990 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.422 0.578 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.529 -9.912 2.897 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.164 1.164 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.047 4.047 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.095 4.095 13 H 0.134 0.866 14 C 0.326 3.674 15 O -0.434 6.434 16 O -0.328 6.328 17 C -0.078 4.078 18 C -0.147 4.147 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.146 4.146 23 C -0.164 4.164 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.283 0.717 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.470 -9.475 3.000 26.411 hybrid contribution -0.952 0.426 -1.061 1.488 sum 23.518 -9.049 1.939 25.273 Atomic orbital electron populations 1.70077 1.08369 1.28208 1.52749 1.26072 0.95672 1.03694 0.93999 0.85623 0.79747 0.77967 0.79124 1.19601 1.20592 1.16419 1.21539 0.92399 0.92972 1.50428 0.95519 1.19504 0.93676 0.95133 0.96395 1.21405 0.95134 0.97320 0.99864 1.21655 0.94440 0.94255 1.03525 1.21394 0.99115 0.96147 0.92844 0.86581 1.23911 0.71684 0.80167 0.91615 1.90710 1.49274 1.65988 1.37423 1.84511 1.80577 1.24080 1.43619 1.20025 0.89518 1.01144 0.97083 1.21427 0.97447 1.01642 0.94181 1.21305 0.93612 0.98764 1.01665 1.21911 0.98722 0.98187 0.96454 1.21352 1.01093 0.98309 0.95071 1.21252 0.93829 1.00669 0.98847 1.20718 0.96694 1.00954 0.98026 0.92470 0.95349 0.97183 0.95344 0.92592 0.91726 0.88663 0.71714 0.89858 0.91400 0.90579 0.91737 0.91244 0.91669 0.92162 0.91935 0.92759 0.90949 0.92163 0.93865 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 2 C 0.00 0.12 5.47 84.66 0.46 0.59 16 3 Si 0.95 45.68 27.47 68.60 1.88 47.56 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.54 -32.48 9.66 25.60 0.25 -32.24 16 8 H 0.03 1.78 7.99 -2.92 -0.02 1.76 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.10 -4.07 4.95 30.60 0.15 -3.92 16 11 C -0.10 -3.12 3.57 30.59 0.11 -3.01 16 12 C -0.08 -1.88 2.00 -11.54 -0.02 -1.90 16 13 H 0.12 2.56 7.94 -2.38 -0.02 2.54 16 14 C 0.48 13.75 5.79 71.23 0.41 14.16 16 15 O -0.54 -19.50 15.32 21.95 0.34 -19.17 16 16 O -0.51 -11.52 13.42 -51.35 -0.69 -12.21 16 17 C -0.06 -1.13 1.48 -12.65 -0.02 -1.15 16 18 C -0.11 -1.76 4.28 30.20 0.13 -1.63 16 19 C -0.12 -1.52 5.31 30.14 0.16 -1.36 16 20 C -0.12 -1.50 5.85 31.32 0.18 -1.32 16 21 C -0.12 -1.85 5.32 30.14 0.16 -1.69 16 22 C -0.11 -1.82 5.61 30.20 0.17 -1.65 16 23 C -0.13 -2.70 3.90 28.74 0.11 -2.58 16 24 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 25 H 0.03 1.32 7.20 -2.38 -0.02 1.30 16 26 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 27 H 0.03 1.27 7.07 -2.39 -0.02 1.25 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 2.15 6.20 -2.38 -0.01 2.14 16 30 H 0.09 2.55 6.96 -2.39 -0.02 2.53 16 31 H 0.42 6.15 9.10 -74.06 -0.67 5.47 16 32 H 0.08 1.44 7.45 -2.38 -0.02 1.42 16 33 H 0.07 1.19 6.41 -2.38 -0.02 1.17 16 34 H 0.08 1.15 7.84 -2.39 -0.02 1.13 16 35 H 0.06 0.81 6.63 -2.39 -0.02 0.79 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.95 6.63 -2.39 -0.02 0.93 16 41 H 0.07 1.08 6.98 -2.39 -0.02 1.06 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.04 1.10 6.30 -2.39 -0.02 1.09 16 44 H 0.06 1.46 5.66 -2.39 -0.01 1.45 16 Total: -1.00 -73.91 329.25 4.46 -69.45 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.25 Total: 13.91 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 2.38 Total: -38.06 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.30 Total: -61.49 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.35 Total: -31.38 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -73.91 4.46 -69.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688453034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.483 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds