Wall clock time and date at job start Mon Mar 30 2020 07:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46682 * 299.99924 * 3 2 1 6 6 H 1.48500 * 109.47241 * 59.99340 * 3 2 1 7 7 C 1.37876 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99661 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47206 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.46609 * 55.00271 * 12 11 10 14 14 C 1.50701 * 109.47184 * 295.00640 * 12 11 10 15 15 O 1.20832 * 119.99678 * 240.00119 * 14 12 11 16 16 O 1.34225 * 120.00378 * 59.99327 * 14 12 11 17 17 C 1.53000 * 109.46984 * 175.00193 * 12 11 10 18 18 C 1.50476 * 108.87353 * 179.97438 * 17 12 11 19 19 C 1.54245 * 108.51856 * 214.93199 * 18 17 12 20 20 C 1.45542 * 112.40792 * 280.00900 * 19 18 17 21 21 C 1.54245 * 112.32700 * 61.98392 * 20 19 18 22 22 C 1.50546 * 108.48390 * 279.88442 * 21 20 19 23 23 C 1.54056 * 108.87935 * 302.97879 * 17 12 11 24 24 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47460 * 60.00241 * 9 7 2 26 26 H 1.08998 * 109.47095 * 299.99740 * 9 7 2 27 27 H 1.09004 * 109.46980 * 60.00156 * 10 9 7 28 28 H 1.08993 * 109.47400 * 300.00527 * 10 9 7 29 29 H 1.09004 * 109.46843 * 60.00293 * 11 10 9 30 30 H 1.08993 * 109.47552 * 300.00655 * 11 10 9 31 31 H 0.96696 * 117.00187 * 179.97438 * 16 14 12 32 32 H 1.09003 * 108.85174 * 61.44709 * 17 12 11 33 33 H 1.09002 * 109.62685 * 95.22749 * 18 17 12 34 34 H 1.08995 * 109.63266 * 334.64342 * 18 17 12 35 35 H 1.08997 * 108.89530 * 159.25760 * 19 18 17 36 36 H 1.09001 * 108.81525 * 40.70995 * 19 18 17 37 37 H 1.09002 * 108.89596 * 182.69054 * 20 19 18 38 38 H 1.09003 * 108.89788 * 301.28088 * 20 19 18 39 39 H 1.09000 * 109.62486 * 39.68278 * 21 20 19 40 40 H 1.08999 * 109.63051 * 160.25691 * 21 20 19 41 41 H 1.09000 * 108.92627 * 333.51136 * 22 21 20 42 42 H 1.09003 * 108.91864 * 215.01792 * 22 21 20 43 43 H 1.09000 * 108.81295 * 318.36452 * 23 17 12 44 44 H 1.08999 * 108.81700 * 76.64582 * 23 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0018 13 1 3.1584 -6.0427 0.8436 14 6 3.2575 -6.1423 -1.2858 15 8 3.2116 -7.0958 -2.0265 16 8 4.0057 -5.0761 -1.6099 17 6 1.7136 -7.4714 0.1281 18 6 2.7032 -8.6050 0.1268 19 6 2.0699 -9.8073 -0.6029 20 6 1.1507 -10.5504 0.2463 21 6 -0.0451 -9.6920 0.7073 22 6 0.4000 -8.8342 1.8617 23 6 0.8602 -7.4347 1.4102 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5572 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8893 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8913 31 1 4.4903 -5.1176 -2.4456 32 1 1.0520 -7.5804 -0.7312 33 1 2.9418 -8.8840 1.1531 34 1 3.6109 -8.2981 -0.3927 35 1 2.8634 -10.4769 -0.9346 36 1 1.5279 -9.4432 -1.4758 37 1 0.7749 -11.4105 -0.3079 38 1 1.6900 -10.9051 1.1247 39 1 -0.3792 -9.0584 -0.1143 40 1 -0.8600 -10.3411 1.0276 41 1 1.2258 -9.3296 2.3725 42 1 -0.4292 -8.7242 2.5606 43 1 1.4469 -6.9829 2.2101 44 1 -0.0190 -6.8163 1.2297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688453035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:16 Heat of formation + Delta-G solvation = -139.871534 kcal Electronic energy + Delta-G solvation = -21444.979119 eV Core-core repulsion = 18360.324587 eV Total energy + Delta-G solvation = -3084.654532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68174 -38.74509 -35.93742 -35.58024 -33.39646 -32.26605 -31.69042 -29.00953 -26.02213 -24.94761 -23.92891 -22.78671 -20.73202 -20.64323 -19.85029 -18.97289 -17.77717 -16.64401 -16.25926 -15.76116 -15.40314 -14.75230 -14.45146 -14.28802 -13.94136 -13.69481 -13.17623 -12.98689 -12.82862 -12.72098 -12.18461 -12.11226 -11.68542 -11.59874 -11.32115 -11.21935 -10.87973 -10.76516 -10.68476 -10.59903 -10.47076 -10.44203 -10.36385 -10.20325 -10.12958 -9.88617 -9.51097 -9.17029 -8.94888 -8.30497 -5.96031 -3.97535 2.43346 3.28412 3.32973 3.40435 3.44860 4.48476 4.55726 4.59133 4.71628 4.96319 5.08272 5.11183 5.23133 5.34799 5.37594 5.39852 5.41989 5.54564 5.55711 5.71355 5.77086 5.91780 5.98961 6.00292 6.07483 6.11724 6.16592 6.19527 6.21372 6.27952 6.36184 6.42250 6.49661 6.52833 6.75277 6.83172 7.01888 7.27878 7.74528 7.89582 8.05685 8.15227 8.49275 9.10374 9.66293 11.15454 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.004030 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.970936 B = 6945.783553 C = 7649.061864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.080 4.080 13 H 0.104 0.896 14 C 0.486 3.514 15 O -0.522 6.522 16 O -0.500 6.500 17 C -0.068 4.068 18 C -0.111 4.111 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.113 4.113 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.400 0.600 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 -19.383 1.302 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.158 4.158 11 C -0.150 4.150 12 C -0.100 4.100 13 H 0.122 0.878 14 C 0.330 3.670 15 O -0.412 6.412 16 O -0.311 6.311 17 C -0.087 4.087 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.258 0.742 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.226 -19.501 1.479 19.822 hybrid contribution 0.737 1.019 -0.589 1.389 sum 3.964 -18.482 0.890 18.923 Atomic orbital electron populations 1.69980 1.06040 1.26340 1.51337 1.25033 0.94827 0.99210 0.95523 0.86572 0.80172 0.83963 0.77515 1.19739 1.21096 1.21083 1.21325 0.93103 0.91108 1.49865 0.92631 1.19095 0.94017 0.91578 0.96925 1.21881 0.99086 0.93138 1.01669 1.21761 0.96990 0.93517 1.02744 1.21417 0.97493 0.98240 0.92801 0.87796 1.23590 0.76398 0.78880 0.88162 1.90668 1.62573 1.35680 1.52258 1.84778 1.58431 1.43235 1.44631 1.20875 0.96590 0.92170 0.99059 1.21461 0.98592 0.94842 0.99984 1.20353 0.98487 0.97103 0.98929 1.20519 0.96657 0.98294 0.99890 1.21375 0.97335 0.98210 0.98774 1.21337 1.00591 0.95628 0.97796 1.22012 0.99653 0.96764 0.96649 0.93170 0.96888 0.96849 0.93482 0.91121 0.92130 0.90503 0.74208 0.90520 0.92324 0.91278 0.92876 0.91914 0.92813 0.92511 0.91442 0.92338 0.92244 0.92359 0.91786 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.12 -2.43 4.79 -26.73 -0.13 -2.56 16 11 C -0.11 -1.83 4.42 -26.73 -0.12 -1.94 16 12 C -0.08 -1.09 1.78 -91.77 -0.16 -1.26 16 13 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.49 7.07 6.93 36.01 0.25 7.32 16 15 O -0.52 -8.28 14.83 -18.76 -0.28 -8.56 16 16 O -0.50 -6.86 10.57 -39.24 -0.41 -7.28 16 17 C -0.07 -0.82 0.99 -91.33 -0.09 -0.91 16 18 C -0.11 -1.27 4.43 -27.34 -0.12 -1.39 16 19 C -0.11 -1.19 5.26 -29.60 -0.16 -1.35 16 20 C -0.12 -1.07 5.27 -29.60 -0.16 -1.23 16 21 C -0.12 -1.11 5.61 -27.31 -0.15 -1.27 16 22 C -0.12 -1.09 5.32 -27.39 -0.15 -1.24 16 23 C -0.11 -1.23 4.23 -25.61 -0.11 -1.34 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.44 5.46 -51.93 -0.28 1.15 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.19 6.44 -51.93 -0.33 0.86 16 31 H 0.40 3.73 9.10 45.56 0.41 4.15 16 32 H 0.08 1.02 6.52 -51.93 -0.34 0.68 16 33 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16 34 H 0.07 0.89 5.62 -51.93 -0.29 0.59 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.75 7.46 -51.93 -0.39 0.37 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.50 7.46 -51.93 -0.39 0.11 16 39 H 0.07 0.69 6.96 -51.93 -0.36 0.33 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.54 6.63 -51.93 -0.34 0.19 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.68 7.98 -51.93 -0.41 0.27 16 44 H 0.07 0.77 7.20 -51.93 -0.37 0.39 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -31.78 331.25 -8.44 -40.21 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.81 Total: 0.60 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.64 Total: -20.30 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.69 Total: -15.83 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.78 -8.44 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688453035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.658 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds