Wall clock time and date at job start Mon Mar 30 2020 07:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46682 * 299.99924 * 3 2 1 6 6 H 1.48500 * 109.47241 * 59.99340 * 3 2 1 7 7 C 1.37876 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99661 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47206 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.46609 * 55.00271 * 12 11 10 14 14 C 1.50701 * 109.47184 * 295.00640 * 12 11 10 15 15 O 1.20832 * 119.99678 * 240.00119 * 14 12 11 16 16 O 1.34225 * 120.00378 * 59.99327 * 14 12 11 17 17 C 1.53000 * 109.46984 * 175.00193 * 12 11 10 18 18 C 1.50476 * 108.87353 * 179.97438 * 17 12 11 19 19 C 1.54245 * 108.51856 * 214.93199 * 18 17 12 20 20 C 1.45542 * 112.40792 * 280.00900 * 19 18 17 21 21 C 1.54245 * 112.32700 * 61.98392 * 20 19 18 22 22 C 1.50546 * 108.48390 * 279.88442 * 21 20 19 23 23 C 1.54056 * 108.87935 * 302.97879 * 17 12 11 24 24 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47460 * 60.00241 * 9 7 2 26 26 H 1.08998 * 109.47095 * 299.99740 * 9 7 2 27 27 H 1.09004 * 109.46980 * 60.00156 * 10 9 7 28 28 H 1.08993 * 109.47400 * 300.00527 * 10 9 7 29 29 H 1.09004 * 109.46843 * 60.00293 * 11 10 9 30 30 H 1.08993 * 109.47552 * 300.00655 * 11 10 9 31 31 H 0.96696 * 117.00187 * 179.97438 * 16 14 12 32 32 H 1.09003 * 108.85174 * 61.44709 * 17 12 11 33 33 H 1.09002 * 109.62685 * 95.22749 * 18 17 12 34 34 H 1.08995 * 109.63266 * 334.64342 * 18 17 12 35 35 H 1.08997 * 108.89530 * 159.25760 * 19 18 17 36 36 H 1.09001 * 108.81525 * 40.70995 * 19 18 17 37 37 H 1.09002 * 108.89596 * 182.69054 * 20 19 18 38 38 H 1.09003 * 108.89788 * 301.28088 * 20 19 18 39 39 H 1.09000 * 109.62486 * 39.68278 * 21 20 19 40 40 H 1.08999 * 109.63051 * 160.25691 * 21 20 19 41 41 H 1.09000 * 108.92627 * 333.51136 * 22 21 20 42 42 H 1.09003 * 108.91864 * 215.01792 * 22 21 20 43 43 H 1.09000 * 108.81295 * 318.36452 * 23 17 12 44 44 H 1.08999 * 108.81700 * 76.64582 * 23 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0018 13 1 3.1584 -6.0427 0.8436 14 6 3.2575 -6.1423 -1.2858 15 8 3.2116 -7.0958 -2.0265 16 8 4.0057 -5.0761 -1.6099 17 6 1.7136 -7.4714 0.1281 18 6 2.7032 -8.6050 0.1268 19 6 2.0699 -9.8073 -0.6029 20 6 1.1507 -10.5504 0.2463 21 6 -0.0451 -9.6920 0.7073 22 6 0.4000 -8.8342 1.8617 23 6 0.8602 -7.4347 1.4102 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5572 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8893 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8913 31 1 4.4903 -5.1176 -2.4456 32 1 1.0520 -7.5804 -0.7312 33 1 2.9418 -8.8840 1.1531 34 1 3.6109 -8.2981 -0.3927 35 1 2.8634 -10.4769 -0.9346 36 1 1.5279 -9.4432 -1.4758 37 1 0.7749 -11.4105 -0.3079 38 1 1.6900 -10.9051 1.1247 39 1 -0.3792 -9.0584 -0.1143 40 1 -0.8600 -10.3411 1.0276 41 1 1.2258 -9.3296 2.3725 42 1 -0.4292 -8.7242 2.5606 43 1 1.4469 -6.9829 2.2101 44 1 -0.0190 -6.8163 1.2297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688453035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:15 Heat of formation + Delta-G solvation = -157.224107 kcal Electronic energy + Delta-G solvation = -21445.731583 eV Core-core repulsion = 18360.324587 eV Total energy + Delta-G solvation = -3085.406996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.79001 -39.67425 -37.12269 -36.90276 -35.18188 -33.31819 -33.07075 -30.47351 -27.60276 -25.98325 -24.92431 -24.39125 -22.11793 -21.58904 -21.19031 -19.91208 -18.92726 -18.40294 -17.79609 -16.83298 -16.46446 -16.38508 -15.62465 -15.41935 -15.17608 -14.70555 -14.50053 -14.22577 -14.07307 -13.77126 -13.67459 -13.33122 -13.07385 -12.95337 -12.69274 -12.57181 -12.47021 -12.24775 -12.17282 -11.70395 -11.65550 -11.45767 -11.32586 -11.28028 -11.22272 -11.13480 -11.03153 -10.89612 -10.71735 -10.51317 -8.17128 -6.27386 1.27260 1.41017 1.41233 1.54757 2.24080 2.43089 3.16067 3.55869 3.70462 3.86800 3.99419 4.15941 4.21682 4.29588 4.39799 4.44934 4.49339 4.55153 4.61106 4.64374 4.69701 4.92044 4.93479 4.97482 5.09639 5.18939 5.19495 5.24250 5.31494 5.32904 5.38220 5.38984 5.41355 5.43544 5.54027 5.59192 5.62479 5.65217 5.74980 5.85013 5.96139 6.31344 6.90583 7.09800 7.41727 8.94892 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.004030 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.970936 B = 6945.783553 C = 7649.061864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.108 4.108 11 C -0.102 4.102 12 C -0.075 4.075 13 H 0.120 0.880 14 C 0.486 3.514 15 O -0.538 6.538 16 O -0.508 6.508 17 C -0.060 4.060 18 C -0.108 4.108 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.113 4.113 24 H 0.262 0.738 25 H -0.015 1.015 26 H -0.009 1.009 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -19.985 2.142 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.139 4.139 12 C -0.094 4.094 13 H 0.138 0.862 14 C 0.330 3.670 15 O -0.428 6.428 16 O -0.321 6.321 17 C -0.079 4.079 18 C -0.145 4.145 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.151 4.151 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.010 0.990 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.279 0.721 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.414 -20.111 2.308 20.718 hybrid contribution 0.363 1.220 -0.896 1.557 sum 4.777 -18.891 1.412 19.536 Atomic orbital electron populations 1.70110 1.07793 1.27547 1.52145 1.25981 0.95746 1.03321 0.94943 0.85430 0.79180 0.78929 0.77707 1.18509 1.20550 1.20381 1.21766 0.93562 0.92455 1.49810 0.92213 1.19028 0.94496 0.93432 0.94443 1.21686 0.97957 0.92915 1.01945 1.21575 0.97130 0.92612 1.02632 1.21400 0.97079 0.97804 0.93113 0.86233 1.23713 0.76308 0.78731 0.88208 1.90666 1.63146 1.36275 1.52742 1.84711 1.58490 1.42901 1.45996 1.20812 0.96418 0.91523 0.99146 1.21417 0.97695 0.94705 1.00728 1.20325 0.98693 0.96991 0.98521 1.20494 0.96337 0.98227 1.00095 1.21381 0.97802 0.98248 0.98310 1.21327 1.01208 0.94620 0.97912 1.22017 0.99114 0.97863 0.96086 0.92907 0.99691 0.99034 0.92889 0.91096 0.93265 0.89754 0.72095 0.92152 0.90803 0.92671 0.92575 0.93764 0.92060 0.91399 0.92857 0.91109 0.91279 0.91600 0.91181 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.11 -4.34 4.79 30.60 0.15 -4.20 16 11 C -0.10 -3.29 4.42 30.60 0.14 -3.16 16 12 C -0.08 -1.97 1.78 -11.54 -0.02 -1.99 16 13 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 14 C 0.49 13.78 6.93 71.24 0.49 14.28 16 15 O -0.54 -16.81 14.83 21.95 0.33 -16.49 16 16 O -0.51 -13.42 10.57 -51.37 -0.54 -13.97 16 17 C -0.06 -1.40 0.99 -11.25 -0.01 -1.41 16 18 C -0.11 -2.31 4.43 30.20 0.13 -2.18 16 19 C -0.11 -2.19 5.26 28.74 0.15 -2.04 16 20 C -0.11 -1.89 5.27 28.74 0.15 -1.74 16 21 C -0.12 -2.04 5.61 30.22 0.17 -1.87 16 22 C -0.11 -1.90 5.32 30.17 0.16 -1.74 16 23 C -0.11 -2.30 4.23 31.32 0.13 -2.17 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.07 2.86 5.46 -2.39 -0.01 2.84 16 29 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.08 2.59 6.44 -2.39 -0.02 2.58 16 31 H 0.42 7.35 9.10 -74.06 -0.67 6.67 16 32 H 0.06 1.61 6.52 -2.39 -0.02 1.59 16 33 H 0.07 1.35 6.98 -2.39 -0.02 1.34 16 34 H 0.05 1.35 5.62 -2.39 -0.01 1.34 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 1.06 7.46 -2.39 -0.02 1.04 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.00 7.46 -2.39 -0.02 0.98 16 39 H 0.05 1.06 6.96 -2.39 -0.02 1.04 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.05 6.63 -2.39 -0.02 1.03 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.35 7.98 -2.39 -0.02 1.33 16 44 H 0.06 1.29 7.20 -2.39 -0.02 1.27 16 Total: -1.00 -67.94 331.25 4.88 -63.06 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.30 Total: 15.20 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 2.49 Total: -37.19 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.20 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.22 Total: -30.45 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.94 4.88 -63.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688453035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.162 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds