Wall clock time and date at job start Mon Mar 30 2020 06:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48492 * 109.47306 * 269.99605 * 3 2 1 5 5 H 1.48497 * 109.47064 * 29.99857 * 3 2 1 6 6 H 1.48501 * 109.46877 * 149.99724 * 3 2 1 7 7 C 1.37874 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00222 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99768 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46881 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99730 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46761 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46748 * 174.88376 * 12 11 10 14 14 C 1.50697 * 112.82794 * 294.18655 * 13 12 11 15 15 O 1.20830 * 119.99753 * 114.27859 * 14 13 12 16 16 O 1.34230 * 120.00216 * 294.27857 * 14 13 12 17 17 C 1.53956 * 113.58041 * 162.99674 * 13 12 11 18 18 C 1.52909 * 86.78331 * 270.13304 * 17 13 12 19 19 C 1.52911 * 121.13975 * 100.81553 * 18 17 13 20 20 C 1.53949 * 86.78240 * 100.82148 * 19 18 17 21 21 C 1.52906 * 121.13835 * 209.37679 * 18 17 13 22 22 C 1.52916 * 88.04143 * 335.09931 * 18 17 13 23 23 H 0.96999 * 119.99778 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47204 * 59.99627 * 9 7 2 25 25 H 1.08998 * 109.46795 * 299.99492 * 9 7 2 26 26 H 1.09001 * 109.47036 * 299.99923 * 11 10 9 27 27 H 1.08999 * 109.47197 * 60.00745 * 11 10 9 28 28 H 1.08995 * 109.47902 * 294.88581 * 12 11 10 29 29 H 1.09002 * 109.46989 * 54.89277 * 12 11 10 30 30 H 0.96703 * 116.99742 * 179.97438 * 16 14 13 31 31 H 1.09004 * 113.65837 * 24.60186 * 17 13 12 32 32 H 1.08990 * 113.66791 * 155.66273 * 17 13 12 33 33 H 1.08995 * 113.66761 * 215.29518 * 19 18 17 34 34 H 1.09005 * 113.66129 * 346.34785 * 19 18 17 35 35 H 1.09002 * 113.57861 * 270.13672 * 20 19 18 36 36 H 1.08999 * 113.65028 * 139.34744 * 20 19 18 37 37 H 1.08998 * 113.66301 * 13.65416 * 21 18 17 38 38 H 1.09009 * 113.65931 * 144.70676 * 21 18 17 39 39 H 1.09000 * 113.66056 * 270.42542 * 22 18 17 40 40 H 1.08994 * 113.74479 * 139.38202 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.4124 -2.6542 -0.0001 12 6 5.8068 -4.1325 0.0004 13 6 7.3264 -4.2549 -0.1283 14 6 7.8421 -3.7641 -1.4565 15 8 8.5518 -2.7875 -1.5056 16 8 7.5130 -4.4120 -2.5852 17 6 7.8689 -5.6391 0.2715 18 6 7.9960 -5.0841 1.6906 19 6 6.9537 -5.4065 2.7620 20 6 7.9533 -6.4476 3.2977 21 6 9.0667 -5.6044 2.6502 22 6 8.0945 -3.6861 1.0787 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8751 -0.6797 -0.8895 26 1 5.8151 -2.1706 -0.8901 27 1 5.8152 -2.1709 0.8899 28 1 5.4827 -4.5948 0.9327 29 1 5.3293 -4.6362 -0.8401 30 1 7.8675 -4.0595 -3.4130 31 1 7.1352 -6.4399 0.1790 32 1 8.8256 -5.8840 -0.1897 33 1 6.7669 -4.5839 3.4522 34 1 6.0379 -5.8436 2.3640 35 1 7.8372 -7.4344 2.8495 36 1 8.0086 -6.4812 4.3858 37 1 9.8389 -6.1996 2.1629 38 1 9.4737 -4.8373 3.3090 39 1 9.1147 -3.3821 0.8443 40 1 7.5416 -2.9257 1.6301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691388282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:59 Heat of formation + Delta-G solvation = -106.249139 kcal Electronic energy + Delta-G solvation = -20925.213701 eV Core-core repulsion = 17706.184051 eV Total energy + Delta-G solvation = -3219.029650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57120 -39.59938 -37.10072 -36.20015 -35.44003 -32.69714 -30.70315 -27.87349 -26.48527 -25.95231 -25.45202 -22.71948 -22.55901 -21.83184 -19.62367 -18.14115 -17.85971 -16.92390 -16.68679 -16.14521 -15.68223 -15.40193 -15.08300 -14.80130 -14.47822 -14.22056 -13.54160 -13.21886 -12.84452 -12.66600 -12.51632 -12.38916 -12.31197 -11.99381 -11.58968 -11.42029 -11.21401 -11.15489 -10.99047 -10.67711 -10.66253 -10.49736 -10.32939 -10.22624 -9.87460 -9.85749 -9.20574 -8.87355 -8.49547 -6.12745 -4.12007 2.13471 2.95520 3.24813 3.31704 3.33931 4.00071 4.16589 4.21571 4.27884 4.35082 4.54734 4.60956 4.72570 5.13513 5.18656 5.22014 5.26768 5.35972 5.39731 5.48496 5.56893 5.59515 5.63945 5.71842 5.74211 5.77743 5.84145 5.90750 6.04508 6.17369 6.23010 6.26031 6.30957 6.43135 6.59982 6.97957 7.57724 7.83644 7.97981 8.63841 8.97992 9.46494 11.00178 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.004532 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.413070 B = 6177.319776 C = 6833.593047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.379 6.379 11 C 0.059 3.941 12 C -0.093 4.093 13 C -0.071 4.071 14 C 0.495 3.505 15 O -0.515 6.515 16 O -0.511 6.511 17 C -0.092 4.092 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.140 4.140 21 C -0.125 4.125 22 C -0.105 4.105 23 H 0.267 0.733 24 H 0.004 0.996 25 H -0.002 1.002 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.407 0.593 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.814 -12.503 2.391 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.298 6.298 11 C -0.018 4.018 12 C -0.131 4.131 13 C -0.072 4.072 14 C 0.337 3.663 15 O -0.403 6.403 16 O -0.323 6.323 17 C -0.129 4.129 18 C -0.105 4.105 19 C -0.155 4.155 20 C -0.177 4.177 21 C -0.162 4.162 22 C -0.142 4.142 23 H 0.077 0.923 24 H 0.021 0.979 25 H 0.016 0.984 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.265 0.735 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.551 -12.422 2.749 23.326 hybrid contribution 0.808 1.581 -0.754 1.929 sum 20.359 -10.841 1.995 23.152 Atomic orbital electron populations 1.69875 1.06032 1.27117 1.50286 1.24753 0.94802 0.98724 0.94577 0.86869 0.80386 0.83782 0.78861 1.19888 1.20680 1.19085 1.20883 0.88166 0.95373 1.51340 0.89884 1.20616 0.96202 0.79345 0.94432 1.87883 1.17144 1.29751 1.95070 1.22272 0.85045 0.95185 0.99324 1.21327 0.89241 0.97528 1.04969 1.21823 0.97637 0.99431 0.88316 1.23331 0.76698 0.80268 0.86011 1.90705 1.35986 1.26089 1.87509 1.84567 1.71585 1.58187 1.17912 1.22696 1.01529 0.94637 0.94053 1.22387 0.98621 0.96134 0.93393 1.22748 0.96796 0.99172 0.96806 1.22823 0.96588 0.98006 1.00277 1.22734 0.96145 0.99345 0.98001 1.22926 1.00791 0.96859 0.93666 0.92331 0.97852 0.98421 0.94937 0.93922 0.88995 0.89634 0.73466 0.89620 0.89318 0.89358 0.90616 0.90241 0.91480 0.91492 0.89828 0.88838 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.65 9.99 -34.44 -0.34 -16.00 16 8 H 0.08 2.71 8.06 -52.48 -0.42 2.29 16 9 C 0.17 4.42 4.76 36.01 0.17 4.59 16 10 O -0.38 -9.00 10.33 -35.23 -0.36 -9.36 16 11 C 0.06 1.09 5.64 37.16 0.21 1.30 16 12 C -0.09 -1.33 4.94 -26.73 -0.13 -1.46 16 13 C -0.07 -0.85 0.89 -154.68 -0.14 -0.99 16 14 C 0.49 6.59 6.40 36.00 0.23 6.82 16 15 O -0.52 -8.20 16.90 -18.75 -0.32 -8.52 16 16 O -0.51 -5.63 13.42 -39.26 -0.53 -6.16 16 17 C -0.09 -0.86 6.98 -26.28 -0.18 -1.04 16 18 C -0.11 -0.97 0.97 -154.71 -0.15 -1.12 16 19 C -0.12 -1.08 6.83 -26.28 -0.18 -1.26 16 20 C -0.14 -1.06 8.08 -25.75 -0.21 -1.27 16 21 C -0.12 -0.98 7.84 -26.29 -0.21 -1.19 16 22 C -0.11 -1.18 6.49 -26.28 -0.17 -1.35 16 23 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 25 H 0.00 -0.05 7.57 -51.93 -0.39 -0.44 16 26 H 0.03 0.61 7.44 -51.93 -0.39 0.22 16 27 H 0.04 0.74 6.91 -51.93 -0.36 0.38 16 28 H 0.09 1.22 5.75 -51.93 -0.30 0.92 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.41 2.77 9.10 45.56 0.41 3.19 16 31 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.71 7.12 -51.93 -0.37 0.34 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.09 1.06 7.70 -51.93 -0.40 0.66 16 40 H 0.08 1.00 6.81 -51.93 -0.35 0.65 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -34.12 325.11 -6.89 -41.00 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.49 Total: -1.05 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.20 Total: -10.89 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -1.21 Total: -24.04 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.12 -6.89 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691388282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.246 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds