Wall clock time and date at job start Mon Mar 30 2020 06:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48492 * 109.47306 * 269.99605 * 3 2 1 5 5 H 1.48497 * 109.47064 * 29.99857 * 3 2 1 6 6 H 1.48501 * 109.46877 * 149.99724 * 3 2 1 7 7 C 1.37874 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00222 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99768 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46881 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99730 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46761 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46748 * 174.88376 * 12 11 10 14 14 C 1.50697 * 112.82794 * 294.18655 * 13 12 11 15 15 O 1.20830 * 119.99753 * 114.27859 * 14 13 12 16 16 O 1.34230 * 120.00216 * 294.27857 * 14 13 12 17 17 C 1.53956 * 113.58041 * 162.99674 * 13 12 11 18 18 C 1.52909 * 86.78331 * 270.13304 * 17 13 12 19 19 C 1.52911 * 121.13975 * 100.81553 * 18 17 13 20 20 C 1.53949 * 86.78240 * 100.82148 * 19 18 17 21 21 C 1.52906 * 121.13835 * 209.37679 * 18 17 13 22 22 C 1.52916 * 88.04143 * 335.09931 * 18 17 13 23 23 H 0.96999 * 119.99778 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47204 * 59.99627 * 9 7 2 25 25 H 1.08998 * 109.46795 * 299.99492 * 9 7 2 26 26 H 1.09001 * 109.47036 * 299.99923 * 11 10 9 27 27 H 1.08999 * 109.47197 * 60.00745 * 11 10 9 28 28 H 1.08995 * 109.47902 * 294.88581 * 12 11 10 29 29 H 1.09002 * 109.46989 * 54.89277 * 12 11 10 30 30 H 0.96703 * 116.99742 * 179.97438 * 16 14 13 31 31 H 1.09004 * 113.65837 * 24.60186 * 17 13 12 32 32 H 1.08990 * 113.66791 * 155.66273 * 17 13 12 33 33 H 1.08995 * 113.66761 * 215.29518 * 19 18 17 34 34 H 1.09005 * 113.66129 * 346.34785 * 19 18 17 35 35 H 1.09002 * 113.57861 * 270.13672 * 20 19 18 36 36 H 1.08999 * 113.65028 * 139.34744 * 20 19 18 37 37 H 1.08998 * 113.66301 * 13.65416 * 21 18 17 38 38 H 1.09009 * 113.65931 * 144.70676 * 21 18 17 39 39 H 1.09000 * 113.66056 * 270.42542 * 22 18 17 40 40 H 1.08994 * 113.74479 * 139.38202 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.4124 -2.6542 -0.0001 12 6 5.8068 -4.1325 0.0004 13 6 7.3264 -4.2549 -0.1283 14 6 7.8421 -3.7641 -1.4565 15 8 8.5518 -2.7875 -1.5056 16 8 7.5130 -4.4120 -2.5852 17 6 7.8689 -5.6391 0.2715 18 6 7.9960 -5.0841 1.6906 19 6 6.9537 -5.4065 2.7620 20 6 7.9533 -6.4476 3.2977 21 6 9.0667 -5.6044 2.6502 22 6 8.0945 -3.6861 1.0787 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8751 -0.6797 -0.8895 26 1 5.8151 -2.1706 -0.8901 27 1 5.8152 -2.1709 0.8899 28 1 5.4827 -4.5948 0.9327 29 1 5.3293 -4.6362 -0.8401 30 1 7.8675 -4.0595 -3.4130 31 1 7.1352 -6.4399 0.1790 32 1 8.8256 -5.8840 -0.1897 33 1 6.7669 -4.5839 3.4522 34 1 6.0379 -5.8436 2.3640 35 1 7.8372 -7.4344 2.8495 36 1 8.0086 -6.4812 4.3858 37 1 9.8389 -6.1996 2.1629 38 1 9.4737 -4.8373 3.3090 39 1 9.1147 -3.3821 0.8443 40 1 7.5416 -2.9257 1.6301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691388282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:59 Heat of formation + Delta-G solvation = -128.850446 kcal Electronic energy + Delta-G solvation = -20926.193767 eV Core-core repulsion = 17706.184051 eV Total energy + Delta-G solvation = -3220.009716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.46300 -40.50685 -38.80886 -37.18046 -36.41179 -34.91199 -32.07891 -29.85226 -27.42133 -26.63456 -26.40567 -24.11829 -23.77195 -23.43135 -20.53764 -19.15073 -18.95405 -18.77288 -17.83189 -17.45751 -16.93480 -16.66775 -16.33649 -16.18160 -15.80209 -15.19221 -15.06514 -14.58178 -14.34438 -13.92927 -13.69240 -13.37753 -13.18382 -13.03383 -12.96642 -12.86202 -12.59878 -12.40938 -12.29736 -11.94188 -11.87550 -11.65860 -11.56978 -11.40664 -11.09849 -11.02046 -10.94655 -10.68142 -10.45911 -8.41067 -6.49307 1.10439 1.30389 1.32376 1.43465 2.07141 2.25540 2.76859 2.91148 3.25798 3.40948 3.48526 3.63106 3.91462 3.96705 4.02647 4.07137 4.27040 4.34004 4.41472 4.52294 4.60080 4.66071 4.69913 4.83560 4.88097 4.93228 4.95703 4.98635 5.01221 5.09600 5.17221 5.18607 5.28027 5.37713 5.50791 5.54146 5.62336 5.87947 6.53630 6.64380 6.93566 7.14908 8.75801 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.004532 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.413070 B = 6177.319776 C = 6833.593047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.249 1.249 7 C -0.547 4.547 8 H 0.035 0.965 9 C 0.179 3.821 10 O -0.401 6.401 11 C 0.054 3.946 12 C -0.084 4.084 13 C -0.077 4.077 14 C 0.495 3.505 15 O -0.546 6.546 16 O -0.508 6.508 17 C -0.080 4.080 18 C -0.101 4.101 19 C -0.127 4.127 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.108 4.108 23 H 0.274 0.726 24 H 0.013 0.987 25 H 0.005 0.995 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.425 0.575 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.985 -12.487 2.678 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.180 4.180 3 Si 0.771 3.229 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.173 1.173 7 C -0.585 4.585 8 H 0.053 0.947 9 C 0.103 3.897 10 O -0.321 6.321 11 C -0.023 4.023 12 C -0.121 4.121 13 C -0.078 4.078 14 C 0.339 3.661 15 O -0.437 6.437 16 O -0.321 6.321 17 C -0.117 4.117 18 C -0.101 4.101 19 C -0.164 4.164 20 C -0.170 4.170 21 C -0.157 4.157 22 C -0.145 4.145 23 H 0.084 0.916 24 H 0.031 0.969 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.286 0.714 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.729 -12.441 3.018 25.220 hybrid contribution 0.072 1.485 -0.888 1.732 sum 21.802 -10.955 2.130 24.492 Atomic orbital electron populations 1.70014 1.08075 1.28853 1.50749 1.25763 0.95775 1.03137 0.93374 0.85685 0.79439 0.77936 0.79803 1.18516 1.19302 1.17315 1.21120 0.90569 0.94098 1.52675 0.94663 1.20344 0.93636 0.80790 0.94932 1.87839 1.20595 1.28427 1.95202 1.22558 0.82003 0.98195 0.99515 1.21242 0.90978 0.94562 1.05321 1.21853 0.95934 1.01823 0.88193 1.23558 0.76062 0.79707 0.86790 1.90692 1.37559 1.27393 1.88021 1.84531 1.71277 1.57864 1.18456 1.22705 1.02216 0.93120 0.93687 1.22383 0.99554 0.94585 0.93620 1.22805 0.96976 0.99684 0.96936 1.22807 0.95507 0.97892 1.00750 1.22734 0.96103 0.99408 0.97476 1.22943 1.00357 0.97799 0.93436 0.91644 0.96934 0.97693 0.95429 0.92918 0.88052 0.90083 0.71392 0.88612 0.87925 0.89961 0.91124 0.89360 0.90860 0.90368 0.89619 0.88930 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 2 C 0.02 1.08 5.47 84.65 0.46 1.55 16 3 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 7 C -0.55 -33.84 9.99 25.60 0.26 -33.58 16 8 H 0.03 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.18 9.31 4.76 71.24 0.34 9.65 16 10 O -0.40 -19.20 10.33 -148.98 -1.54 -20.74 16 11 C 0.05 1.96 5.64 71.98 0.41 2.37 16 12 C -0.08 -2.32 4.94 30.59 0.15 -2.17 16 13 C -0.08 -1.74 0.89 -52.29 -0.05 -1.79 16 14 C 0.50 12.57 6.40 71.23 0.46 13.03 16 15 O -0.55 -16.95 16.90 21.95 0.37 -16.57 16 16 O -0.51 -10.38 13.42 -51.41 -0.69 -11.07 16 17 C -0.08 -1.31 6.98 30.89 0.22 -1.09 16 18 C -0.10 -1.67 0.97 -52.31 -0.05 -1.72 16 19 C -0.13 -2.11 6.83 30.89 0.21 -1.90 16 20 C -0.13 -1.69 8.08 31.23 0.25 -1.44 16 21 C -0.12 -1.57 7.84 30.88 0.24 -1.33 16 22 C -0.11 -2.29 6.49 30.89 0.20 -2.09 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 25 H 0.01 0.27 7.57 -2.39 -0.02 0.25 16 26 H 0.03 1.02 7.44 -2.39 -0.02 1.00 16 27 H 0.05 1.80 6.91 -2.39 -0.02 1.78 16 28 H 0.10 2.61 5.75 -2.39 -0.01 2.59 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.42 5.10 9.10 -74.06 -0.67 4.42 16 31 H 0.10 1.40 8.10 -2.38 -0.02 1.38 16 32 H 0.10 1.43 8.09 -2.39 -0.02 1.41 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.24 7.12 -2.38 -0.02 1.22 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.09 1.99 7.70 -2.39 -0.02 1.97 16 40 H 0.07 1.69 6.81 -2.39 -0.02 1.67 16 Total: -1.00 -74.39 325.11 3.73 -70.66 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.31 Total: 11.12 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.09 Total: -20.54 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.86 Total: -48.39 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -74.39 3.73 -70.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691388282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.190 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds