Wall clock time and date at job start Mon Mar 30 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00466 * 2 1 4 4 H 1.48499 * 109.47157 * 267.28113 * 3 2 1 5 5 H 1.48504 * 109.47065 * 27.27511 * 3 2 1 6 6 H 1.48498 * 109.47257 * 147.27756 * 3 2 1 7 7 C 1.37882 * 119.99398 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99977 * 342.54119 * 7 2 1 9 9 C 1.50698 * 119.99601 * 162.54764 * 7 2 1 10 10 C 1.53002 * 115.54997 * 112.88589 * 9 7 2 11 11 C 1.52995 * 109.46970 * 52.16983 * 10 9 7 12 12 C 1.50698 * 109.47024 * 294.35664 * 11 10 9 13 13 O 1.20824 * 119.99900 * 341.21243 * 12 11 10 14 14 O 1.34227 * 119.99799 * 161.21299 * 12 11 10 15 15 C 1.52995 * 109.47534 * 54.36303 * 11 10 9 16 16 C 1.52996 * 109.47233 * 59.99589 * 15 11 10 17 17 C 1.52995 * 109.47454 * 60.00523 * 16 15 11 18 18 O 1.42900 * 109.47312 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46769 * 300.00174 * 17 16 15 20 20 C 1.53003 * 109.46938 * 174.36058 * 11 10 9 21 21 C 1.53004 * 117.49637 * 258.55190 * 9 7 2 22 22 C 1.53005 * 117.49990 * 327.21438 * 9 7 2 23 23 H 0.96999 * 119.99799 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46767 * 292.16429 * 10 9 7 25 25 H 1.09004 * 109.46654 * 172.17125 * 10 9 7 26 26 H 0.96701 * 116.99816 * 180.02562 * 14 12 11 27 27 H 1.09005 * 109.46566 * 299.99912 * 15 11 10 28 28 H 1.08997 * 109.47110 * 180.02562 * 15 11 10 29 29 H 1.09000 * 109.47121 * 299.99588 * 16 15 11 30 30 H 1.09010 * 109.46859 * 180.02562 * 16 15 11 31 31 H 1.08997 * 109.46987 * 59.99448 * 17 16 15 32 32 H 0.96695 * 113.99618 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.46903 * 179.97438 * 19 17 16 34 34 H 1.09000 * 109.47216 * 299.99657 * 19 17 16 35 35 H 1.08999 * 109.47369 * 59.99362 * 20 11 10 36 36 H 1.08995 * 109.47496 * 180.02562 * 20 11 10 37 37 H 1.08994 * 117.49982 * 215.00223 * 21 9 7 38 38 H 1.08994 * 117.49686 * 0.03202 * 21 9 7 39 39 H 1.09001 * 117.49857 * 359.97438 * 22 9 7 40 40 H 1.08994 * 117.50078 * 144.97629 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5543 2.0131 -1.3985 5 1 1.4192 2.6686 0.6416 6 1 3.5168 1.4573 0.7568 7 6 2.0045 -1.1942 0.0005 8 1 1.5017 -2.1077 0.2815 9 6 3.4594 -1.2244 -0.3909 10 6 4.4375 -1.5771 0.7316 11 6 3.9930 -2.8765 1.4058 12 6 2.6736 -2.6564 2.0999 13 8 2.3062 -1.5345 2.3573 14 8 1.9066 -3.7067 2.4321 15 6 3.8370 -3.9720 0.3492 16 6 5.1765 -4.1954 -0.3554 17 6 6.2276 -4.6229 0.6709 18 8 7.4786 -4.8321 0.0126 19 6 6.3836 -3.5275 1.7275 20 6 5.0441 -3.3040 2.4322 21 6 3.8013 -1.7049 -1.8027 22 6 3.9279 -0.2213 -1.4470 23 1 -0.4850 0.8401 0.0004 24 1 4.4521 -0.7726 1.4668 25 1 5.4366 -1.7070 0.3153 26 1 1.0687 -3.5156 2.8755 27 1 3.0882 -3.6674 -0.3820 28 1 3.5198 -4.8976 0.8296 29 1 5.4932 -3.2697 -0.8359 30 1 5.0652 -4.9756 -1.1085 31 1 5.9109 -5.5486 1.1513 32 1 8.1931 -5.1061 0.6038 33 1 7.1321 -3.8322 2.4589 34 1 6.7003 -2.6017 1.2472 35 1 5.1553 -2.5235 3.1850 36 1 4.7277 -4.2299 2.9123 37 1 4.7230 -2.2721 -1.9319 38 1 2.9738 -1.9985 -2.4485 39 1 3.1837 0.4602 -1.8590 40 1 4.9328 0.1876 -1.3420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691695619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:04 Heat of formation + Delta-G solvation = -115.599854 kcal Electronic energy + Delta-G solvation = -22851.980515 eV Core-core repulsion = 19632.545387 eV Total energy + Delta-G solvation = -3219.435128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50664 -38.31717 -36.93380 -35.23088 -35.01061 -31.89919 -30.71885 -30.41343 -26.56074 -25.31602 -23.36300 -22.67017 -21.69376 -20.45321 -19.55583 -18.06373 -17.21236 -16.88936 -16.19895 -16.07986 -15.14491 -14.74751 -14.49540 -14.36823 -13.66101 -13.37719 -13.20284 -12.66256 -12.53841 -12.38013 -12.13882 -11.97037 -11.65939 -11.46065 -11.22284 -10.93297 -10.82491 -10.65930 -10.52726 -10.23035 -10.04881 -9.92514 -9.78024 -9.53800 -9.34066 -9.20380 -8.76792 -8.41942 -8.18805 -6.01263 -3.88740 3.35963 3.37154 3.50741 3.58203 3.87715 4.30404 4.56321 4.78093 4.86329 4.94164 5.20609 5.30094 5.36759 5.41272 5.53722 5.61583 5.67217 5.75408 5.92681 6.04375 6.07641 6.12917 6.17503 6.23996 6.33365 6.35446 6.40964 6.57705 6.62707 6.69350 6.79904 6.83881 6.93238 7.18901 7.33956 7.52099 7.67155 7.88763 8.51947 8.96056 9.00119 9.67739 11.11419 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.008592 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.461912 B = 3258.036829 C = 3806.644078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.087 3.913 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.304 1.304 6 H -0.266 1.266 7 C -0.470 4.470 8 H 0.073 0.927 9 C 0.012 3.988 10 C -0.071 4.071 11 C -0.022 4.022 12 C 0.477 3.523 13 O -0.455 6.455 14 O -0.534 6.534 15 C -0.102 4.102 16 C -0.116 4.116 17 C 0.104 3.896 18 O -0.570 6.570 19 C -0.150 4.150 20 C -0.107 4.107 21 C -0.193 4.193 22 C -0.219 4.219 23 H 0.261 0.739 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.398 0.602 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.372 0.628 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.582 -9.062 3.853 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.116 4.116 3 Si 0.722 3.278 4 H -0.211 1.211 5 H -0.232 1.232 6 H -0.191 1.191 7 C -0.507 4.507 8 H 0.091 0.909 9 C 0.011 3.989 10 C -0.109 4.109 11 C -0.023 4.023 12 C 0.316 3.684 13 O -0.337 6.337 14 O -0.347 6.347 15 C -0.140 4.140 16 C -0.153 4.153 17 C 0.045 3.955 18 O -0.375 6.375 19 C -0.187 4.187 20 C -0.145 4.145 21 C -0.230 4.230 22 C -0.256 4.256 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.255 0.745 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.218 0.782 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.321 -8.513 3.218 14.525 hybrid contribution 0.081 1.080 0.777 1.333 sum 11.402 -7.433 3.995 14.185 Atomic orbital electron populations 1.69954 1.06573 1.26894 1.49655 1.24819 0.94284 0.98806 0.93641 0.86892 0.80360 0.83475 0.77114 1.21133 1.23226 1.19085 1.20064 0.89881 0.95139 1.45591 0.90876 1.19372 0.95646 0.97876 0.86041 1.21307 0.97028 0.94221 0.98332 1.20169 0.89168 0.98264 0.94732 1.22630 0.85934 0.82230 0.77653 1.90778 1.71145 1.24331 1.47422 1.84445 1.35208 1.40988 1.74077 1.21538 0.97283 0.97121 0.98049 1.21673 0.93471 1.02737 0.97430 1.21915 0.84206 0.96287 0.93052 1.86541 1.20455 1.91263 1.39207 1.22284 0.97348 1.00795 0.98287 1.21534 0.93871 1.01738 0.97347 1.23180 1.01166 0.95569 1.03106 1.23113 1.00648 0.93396 1.08456 0.92939 0.91472 0.92397 0.74458 0.88728 0.91682 0.89880 0.91501 0.92950 0.78203 0.91911 0.90406 0.91321 0.91228 0.90594 0.89761 0.88980 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.09 2.52 5.23 -17.82 -0.09 2.43 16 3 Si 0.89 23.20 24.62 -169.99 -4.19 19.02 16 4 H -0.28 -7.11 6.16 56.52 0.35 -6.77 16 5 H -0.30 -8.07 7.11 56.52 0.40 -7.66 16 6 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.47 -12.69 5.48 -34.44 -0.19 -12.88 16 8 H 0.07 2.12 6.17 -52.49 -0.32 1.80 16 9 C 0.01 0.26 0.58 -155.66 -0.09 0.17 16 10 C -0.07 -1.40 3.52 -26.73 -0.09 -1.50 16 11 C -0.02 -0.39 0.48 -155.66 -0.08 -0.46 16 12 C 0.48 9.66 4.52 36.00 0.16 9.82 16 13 O -0.46 -11.18 13.92 -18.75 -0.26 -11.44 16 14 O -0.53 -9.30 12.77 -39.25 -0.50 -9.81 16 15 C -0.10 -1.66 3.91 -26.74 -0.10 -1.77 16 16 C -0.12 -1.67 4.88 -26.74 -0.13 -1.80 16 17 C 0.10 1.27 3.47 -26.73 -0.09 1.18 16 18 O -0.57 -6.78 13.32 -35.23 -0.47 -7.25 16 19 C -0.15 -1.78 5.27 -26.73 -0.14 -1.92 16 20 C -0.11 -1.48 4.71 -26.73 -0.13 -1.60 16 21 C -0.19 -3.93 8.12 -26.69 -0.22 -4.14 16 22 C -0.22 -4.86 7.45 -26.68 -0.20 -5.05 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.07 1.45 7.70 -51.93 -0.40 1.05 16 25 H 0.06 1.01 4.76 -51.93 -0.25 0.76 16 26 H 0.40 5.77 9.10 45.56 0.41 6.18 16 27 H 0.09 1.80 5.81 -51.93 -0.30 1.49 16 28 H 0.06 0.98 7.86 -51.93 -0.41 0.57 16 29 H 0.08 1.30 3.96 -51.93 -0.21 1.09 16 30 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.37 2.72 9.08 45.56 0.41 3.14 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.01 6.31 -51.93 -0.33 0.68 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.35 5.57 -51.93 -0.29 1.06 16 38 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.09 2.23 4.77 -51.93 -0.25 1.98 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -33.08 292.98 -5.69 -38.77 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.07 Total: 10.48 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.39 Total: -17.53 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.23 Total: -28.50 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.19 Total: 19.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.08 -5.69 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691695619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.833 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds