Wall clock time and date at job start Mon Mar 30 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00466 * 2 1 4 4 H 1.48499 * 109.47157 * 267.28113 * 3 2 1 5 5 H 1.48504 * 109.47065 * 27.27511 * 3 2 1 6 6 H 1.48498 * 109.47257 * 147.27756 * 3 2 1 7 7 C 1.37882 * 119.99398 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99977 * 342.54119 * 7 2 1 9 9 C 1.50698 * 119.99601 * 162.54764 * 7 2 1 10 10 C 1.53002 * 115.54997 * 112.88589 * 9 7 2 11 11 C 1.52995 * 109.46970 * 52.16983 * 10 9 7 12 12 C 1.50698 * 109.47024 * 294.35664 * 11 10 9 13 13 O 1.20824 * 119.99900 * 341.21243 * 12 11 10 14 14 O 1.34227 * 119.99799 * 161.21299 * 12 11 10 15 15 C 1.52995 * 109.47534 * 54.36303 * 11 10 9 16 16 C 1.52996 * 109.47233 * 59.99589 * 15 11 10 17 17 C 1.52995 * 109.47454 * 60.00523 * 16 15 11 18 18 O 1.42900 * 109.47312 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46769 * 300.00174 * 17 16 15 20 20 C 1.53003 * 109.46938 * 174.36058 * 11 10 9 21 21 C 1.53004 * 117.49637 * 258.55190 * 9 7 2 22 22 C 1.53005 * 117.49990 * 327.21438 * 9 7 2 23 23 H 0.96999 * 119.99799 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46767 * 292.16429 * 10 9 7 25 25 H 1.09004 * 109.46654 * 172.17125 * 10 9 7 26 26 H 0.96701 * 116.99816 * 180.02562 * 14 12 11 27 27 H 1.09005 * 109.46566 * 299.99912 * 15 11 10 28 28 H 1.08997 * 109.47110 * 180.02562 * 15 11 10 29 29 H 1.09000 * 109.47121 * 299.99588 * 16 15 11 30 30 H 1.09010 * 109.46859 * 180.02562 * 16 15 11 31 31 H 1.08997 * 109.46987 * 59.99448 * 17 16 15 32 32 H 0.96695 * 113.99618 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.46903 * 179.97438 * 19 17 16 34 34 H 1.09000 * 109.47216 * 299.99657 * 19 17 16 35 35 H 1.08999 * 109.47369 * 59.99362 * 20 11 10 36 36 H 1.08995 * 109.47496 * 180.02562 * 20 11 10 37 37 H 1.08994 * 117.49982 * 215.00223 * 21 9 7 38 38 H 1.08994 * 117.49686 * 0.03202 * 21 9 7 39 39 H 1.09001 * 117.49857 * 359.97438 * 22 9 7 40 40 H 1.08994 * 117.50078 * 144.97629 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5543 2.0131 -1.3985 5 1 1.4192 2.6686 0.6416 6 1 3.5168 1.4573 0.7568 7 6 2.0045 -1.1942 0.0005 8 1 1.5017 -2.1077 0.2815 9 6 3.4594 -1.2244 -0.3909 10 6 4.4375 -1.5771 0.7316 11 6 3.9930 -2.8765 1.4058 12 6 2.6736 -2.6564 2.0999 13 8 2.3062 -1.5345 2.3573 14 8 1.9066 -3.7067 2.4321 15 6 3.8370 -3.9720 0.3492 16 6 5.1765 -4.1954 -0.3554 17 6 6.2276 -4.6229 0.6709 18 8 7.4786 -4.8321 0.0126 19 6 6.3836 -3.5275 1.7275 20 6 5.0441 -3.3040 2.4322 21 6 3.8013 -1.7049 -1.8027 22 6 3.9279 -0.2213 -1.4470 23 1 -0.4850 0.8401 0.0004 24 1 4.4521 -0.7726 1.4668 25 1 5.4366 -1.7070 0.3153 26 1 1.0687 -3.5156 2.8755 27 1 3.0882 -3.6674 -0.3820 28 1 3.5198 -4.8976 0.8296 29 1 5.4932 -3.2697 -0.8359 30 1 5.0652 -4.9756 -1.1085 31 1 5.9109 -5.5486 1.1513 32 1 8.1931 -5.1061 0.6038 33 1 7.1321 -3.8322 2.4589 34 1 6.7003 -2.6017 1.2472 35 1 5.1553 -2.5235 3.1850 36 1 4.7277 -4.2299 2.9123 37 1 4.7230 -2.2721 -1.9319 38 1 2.9738 -1.9985 -2.4485 39 1 3.1837 0.4602 -1.8590 40 1 4.9328 0.1876 -1.3420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691695619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:04 Heat of formation + Delta-G solvation = -141.223392 kcal Electronic energy + Delta-G solvation = -22853.091635 eV Core-core repulsion = 19632.545387 eV Total energy + Delta-G solvation = -3220.546248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.95343 -39.68090 -38.41214 -36.63599 -36.42234 -34.04329 -31.87615 -31.58998 -28.14705 -27.28130 -24.67180 -23.83484 -23.36679 -21.69756 -21.23223 -19.64247 -18.43297 -18.12712 -17.96082 -17.61629 -16.96954 -16.43890 -15.75425 -15.63040 -14.97127 -14.87529 -14.69819 -14.48819 -14.06046 -13.75144 -13.56115 -13.20130 -13.15433 -12.97063 -12.66519 -12.47587 -12.36778 -12.19687 -11.94095 -11.85443 -11.76025 -11.50284 -11.32661 -10.96491 -10.81954 -10.55682 -10.50287 -10.40285 -10.11273 -8.22583 -6.07853 1.27555 1.36691 1.47809 1.78500 2.41121 2.47946 3.04871 3.33630 3.43713 3.70263 3.79710 4.03726 4.14291 4.21880 4.31699 4.39725 4.43408 4.50432 4.60303 4.60591 4.67567 4.76544 4.84633 4.97381 5.01557 5.05173 5.15073 5.16883 5.20713 5.31370 5.37473 5.47908 5.52006 5.56717 5.68092 5.87243 6.03249 6.31831 6.81161 7.05027 7.44417 7.49342 8.94117 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.008592 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.461912 B = 3258.036829 C = 3806.644078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.316 1.316 6 H -0.258 1.258 7 C -0.444 4.444 8 H 0.042 0.958 9 C -0.012 4.012 10 C -0.063 4.063 11 C -0.024 4.024 12 C 0.476 3.524 13 O -0.511 6.511 14 O -0.526 6.526 15 C -0.094 4.094 16 C -0.114 4.114 17 C 0.111 3.889 18 O -0.583 6.583 19 C -0.143 4.143 20 C -0.102 4.102 21 C -0.165 4.165 22 C -0.228 4.228 23 H 0.256 0.744 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.410 0.590 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.393 0.607 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.121 -10.704 3.926 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.169 4.169 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.246 1.246 6 H -0.182 1.182 7 C -0.481 4.481 8 H 0.060 0.940 9 C -0.013 4.013 10 C -0.101 4.101 11 C -0.025 4.025 12 C 0.318 3.682 13 O -0.396 6.396 14 O -0.339 6.339 15 C -0.132 4.132 16 C -0.151 4.151 17 C 0.052 3.948 18 O -0.391 6.391 19 C -0.180 4.180 20 C -0.140 4.140 21 C -0.202 4.202 22 C -0.264 4.264 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.268 0.732 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.243 0.757 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.902 -10.194 3.289 18.352 hybrid contribution -1.037 1.425 0.781 1.928 sum 13.865 -8.768 4.070 16.903 Atomic orbital electron populations 1.70078 1.08077 1.27054 1.53509 1.25489 0.94786 1.01818 0.94797 0.86152 0.79308 0.80276 0.77772 1.19503 1.24564 1.18200 1.20238 0.92081 0.93383 1.42421 0.93968 1.19399 0.93987 0.99850 0.88029 1.21214 0.97596 0.94589 0.96671 1.20296 0.88599 0.97767 0.95829 1.23432 0.86781 0.81775 0.76239 1.90765 1.72527 1.26288 1.50059 1.84413 1.35750 1.40003 1.73736 1.21409 0.97876 0.96924 0.96995 1.21597 0.92980 1.02464 0.98064 1.21758 0.83977 0.96989 0.92078 1.86487 1.20894 1.91417 1.40290 1.22260 0.96600 1.00404 0.98779 1.21532 0.93754 1.02338 0.96345 1.23126 1.02013 0.94743 1.00337 1.23176 1.01376 0.93889 1.07977 0.93489 0.93762 0.89397 0.73171 0.92125 0.90459 0.91025 0.90868 0.91277 0.75686 0.88557 0.91330 0.91521 0.89547 0.87091 0.91179 0.91296 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 2 C 0.03 1.65 5.23 84.66 0.44 2.09 16 3 Si 0.94 48.76 24.62 68.60 1.69 50.45 16 4 H -0.27 -13.17 6.16 99.48 0.61 -12.55 16 5 H -0.32 -16.96 7.11 99.48 0.71 -16.25 16 6 H -0.26 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.44 -24.56 5.48 25.60 0.14 -24.42 16 8 H 0.04 2.55 6.17 -2.91 -0.02 2.54 16 9 C -0.01 -0.53 0.58 -52.92 -0.03 -0.56 16 10 C -0.06 -2.38 3.52 30.59 0.11 -2.27 16 11 C -0.02 -0.79 0.48 -52.93 -0.03 -0.81 16 12 C 0.48 19.33 4.52 71.24 0.32 19.65 16 13 O -0.51 -25.83 13.92 21.97 0.31 -25.53 16 14 O -0.53 -18.20 12.77 -51.39 -0.66 -18.86 16 15 C -0.09 -2.87 3.91 30.59 0.12 -2.75 16 16 C -0.11 -2.86 4.88 30.59 0.15 -2.71 16 17 C 0.11 2.17 3.47 30.59 0.11 2.27 16 18 O -0.58 -10.95 13.32 -148.98 -1.98 -12.93 16 19 C -0.14 -2.70 5.27 30.59 0.16 -2.54 16 20 C -0.10 -2.47 4.71 30.60 0.14 -2.33 16 21 C -0.17 -6.42 8.12 30.62 0.25 -6.17 16 22 C -0.23 -9.66 7.45 30.62 0.23 -9.43 16 23 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 24 H 0.04 1.86 7.70 -2.39 -0.02 1.84 16 25 H 0.09 2.76 4.76 -2.39 -0.01 2.75 16 26 H 0.41 12.07 9.10 -74.06 -0.67 11.39 16 27 H 0.06 2.25 5.81 -2.38 -0.01 2.24 16 28 H 0.08 2.14 7.86 -2.39 -0.02 2.12 16 29 H 0.07 1.95 3.96 -2.39 -0.01 1.94 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.39 3.66 9.08 -74.06 -0.67 2.99 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.46 6.31 -2.39 -0.02 1.44 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.11 3.56 5.57 -2.39 -0.01 3.54 16 38 H 0.07 2.92 8.14 -2.39 -0.02 2.91 16 39 H 0.07 3.27 4.77 -2.39 -0.01 3.26 16 40 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 Total: -1.00 -74.61 292.98 1.41 -73.20 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.36 Total: 24.21 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 2.11 Total: -29.97 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.30 Total: -60.57 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -2.33 Total: -57.32 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.69 Total: 50.45 kcal Total: -74.61 1.41 -73.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691695619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.022 kcal (2) G-P(sol) polarization free energy of solvation -74.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds