Wall clock time and date at job start Mon Mar 30 2020 07:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00071 * 2 1 4 4 O 1.20834 * 119.99811 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00103 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.70067 * 205.00174 * 5 3 2 7 7 C 1.52993 * 109.47469 * 60.00302 * 6 5 3 8 8 C 1.52996 * 109.47473 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47346 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.53498 * 109.70575 * 84.41944 * 5 3 2 19 19 C 1.53356 * 108.10315 * 177.90221 * 18 5 3 20 20 C 1.50448 * 109.46065 * 46.80043 * 19 18 5 21 21 C 1.30684 * 122.49343 * 342.53058 * 20 19 18 22 22 O 1.35134 * 123.34791 * 0.41160 * 21 20 19 23 23 H 1.08998 * 109.47159 * 299.99761 * 1 2 3 24 24 H 1.08996 * 109.47473 * 59.99693 * 1 2 3 25 25 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47694 * 299.99892 * 6 5 3 27 27 H 1.09004 * 109.46785 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47250 * 59.99618 * 7 6 5 29 29 H 1.09004 * 109.46862 * 299.99641 * 7 6 5 30 30 H 1.09004 * 109.47368 * 59.99787 * 8 7 6 31 31 H 1.08996 * 109.47261 * 300.00171 * 8 7 6 32 32 H 1.09000 * 109.46986 * 60.00254 * 9 8 7 33 33 H 1.08993 * 109.47662 * 300.00031 * 9 8 7 34 34 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.73047 * 297.53376 * 18 5 3 36 36 H 1.09001 * 109.72734 * 58.20514 * 18 5 3 37 37 H 1.09003 * 109.45413 * 286.81025 * 19 18 5 38 38 H 1.08997 * 109.48386 * 166.81040 * 19 18 5 39 39 H 1.07999 * 118.74959 * 162.50668 * 20 19 18 40 40 H 1.07998 * 118.32371 * 180.42813 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0133 2.6054 0.6083 7 6 3.5009 2.7060 2.0464 8 6 3.9485 4.0362 2.6554 9 6 3.4355 4.1370 4.0934 10 6 3.8769 5.4471 4.6935 11 1 4.4641 6.1388 4.1077 12 6 3.5309 5.7625 5.9903 13 7 3.9157 6.9060 6.5138 14 14 2.5158 4.5659 7.0038 15 1 1.0720 4.8550 6.8114 16 1 2.8052 3.1768 6.5656 17 1 2.8634 4.7145 8.4398 18 6 4.0900 1.1619 -1.4391 19 6 5.6170 1.2993 -1.4025 20 6 6.1730 0.4238 -0.3126 21 6 5.4318 -0.0508 0.6534 22 8 4.1065 0.1906 0.7601 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.6082 3.4287 0.0199 27 1 5.1021 2.6582 0.6064 28 1 3.9061 1.8827 2.6348 29 1 2.4122 2.6529 2.0486 30 1 3.5437 4.8597 2.0671 31 1 5.0371 4.0889 2.6532 32 1 3.8400 3.3136 4.6820 33 1 2.3468 4.0846 4.0954 34 1 3.6720 7.1281 7.4261 35 1 3.8178 0.1917 -1.8546 36 1 3.6627 1.9573 -2.0497 37 1 5.8835 2.3378 -1.2059 38 1 6.0327 0.9929 -2.3624 39 1 7.2245 0.1779 -0.3295 40 1 5.9026 -0.6671 1.4050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691697007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:20 Heat of formation + Delta-G solvation = -124.748677 kcal Electronic energy + Delta-G solvation = -21143.881892 eV Core-core repulsion = 17924.050041 eV Total energy + Delta-G solvation = -3219.831850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43914 -39.77263 -36.81746 -35.16215 -34.25237 -33.00656 -31.87167 -29.47396 -28.15260 -26.43696 -24.72104 -23.86792 -21.92638 -21.15437 -20.00715 -18.76315 -17.70638 -17.16362 -16.87223 -16.54934 -16.19891 -15.38019 -14.90793 -14.59911 -14.47065 -14.13003 -13.56839 -13.39289 -13.14429 -13.06416 -12.63864 -12.38209 -12.29907 -11.99131 -11.84817 -11.60526 -11.13830 -11.05266 -10.93578 -10.82871 -10.72224 -10.43713 -10.31995 -9.81373 -9.60818 -9.39842 -9.08901 -8.56365 -8.47307 -5.98327 -3.95323 1.83947 2.19351 2.46233 3.23554 3.35732 3.42242 3.47735 4.20174 4.37092 4.51437 4.60305 4.80651 4.86426 4.94914 5.04394 5.07526 5.29654 5.34688 5.36411 5.38190 5.42660 5.52332 5.62629 5.74432 5.95143 6.00850 6.11043 6.17210 6.24152 6.35850 6.46406 6.72509 6.82750 7.03123 7.33283 7.41056 7.54324 7.58584 7.87336 8.61508 9.07134 9.65107 11.15373 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.004864 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.810299 B = 5755.233970 C = 6480.240721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.347 6.347 3 C 0.483 3.517 4 O -0.482 6.482 5 C 0.131 3.869 6 C -0.129 4.129 7 C -0.122 4.122 8 C -0.098 4.098 9 C -0.015 4.015 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.906 5.906 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.265 1.265 17 H -0.288 1.288 18 C -0.145 4.145 19 C -0.078 4.078 20 C -0.283 4.283 21 C 0.061 3.939 22 O -0.299 6.299 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.014 0.986 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -17.308 -17.809 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.263 6.263 3 C 0.324 3.676 4 O -0.368 6.368 5 C 0.091 3.909 6 C -0.166 4.166 7 C -0.160 4.160 8 C -0.136 4.136 9 C -0.052 4.052 10 C -0.556 4.556 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.190 1.190 17 H -0.214 1.214 18 C -0.183 4.183 19 C -0.115 4.115 20 C -0.302 4.302 21 C -0.001 4.001 22 O -0.213 6.213 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.142 0.858 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.801 -17.005 -17.528 24.435 hybrid contribution -0.567 -0.349 0.549 0.863 sum -1.369 -17.355 -16.979 24.318 Atomic orbital electron populations 1.23330 0.76336 1.03784 1.02772 1.86581 1.23292 1.32910 1.83471 1.22987 0.90260 0.81832 0.72472 1.90743 1.65578 1.36223 1.44236 1.21756 0.86246 0.89315 0.93579 1.22174 1.02362 0.93324 0.98728 1.21710 1.00909 1.00048 0.93317 1.21402 1.00008 0.94238 0.97930 1.19574 0.95790 0.97458 0.92371 1.21193 1.33948 1.02190 0.98226 0.91095 1.25036 0.95715 0.95083 0.97748 1.69926 1.46854 1.22599 1.15198 0.86778 0.80842 0.82455 0.79247 1.20334 1.19002 1.21424 1.22267 0.97808 1.04198 0.94027 1.20367 0.92814 1.00049 0.98262 1.22480 1.01115 1.07841 0.98791 1.22039 0.82212 0.98553 0.97334 1.86041 1.21997 1.48257 1.65009 0.91516 0.91885 0.88011 0.89378 0.89467 0.92009 0.92210 0.92831 0.92922 0.96756 0.97211 0.92847 0.89836 0.89442 0.90245 0.90123 0.85812 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.51 10.32 -44.40 -0.46 -4.97 16 3 C 0.48 6.98 6.07 36.01 0.22 7.19 16 4 O -0.48 -8.00 14.80 -18.76 -0.28 -8.27 16 5 C 0.13 1.70 0.75 -91.52 -0.07 1.63 16 6 C -0.13 -1.85 3.50 -26.74 -0.09 -1.94 16 7 C -0.12 -2.18 4.79 -26.74 -0.13 -2.31 16 8 C -0.10 -2.07 5.15 -26.73 -0.14 -2.21 16 9 C -0.01 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.52 -15.44 9.66 -34.44 -0.33 -15.77 16 11 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 12 C 0.06 1.96 5.47 -17.82 -0.10 1.86 16 13 N -0.91 -28.82 13.96 55.43 0.77 -28.04 16 14 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 C -0.15 -1.46 5.12 -26.29 -0.13 -1.60 16 19 C -0.08 -0.70 5.58 -27.82 -0.16 -0.85 16 20 C -0.28 -2.70 9.46 -36.06 -0.34 -3.04 16 21 C 0.06 0.66 10.47 29.10 0.30 0.96 16 22 O -0.30 -3.98 8.95 -30.84 -0.28 -4.26 16 23 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 24 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.26 7.88 -51.93 -0.41 0.85 16 27 H 0.09 1.16 5.99 -51.93 -0.31 0.85 16 28 H 0.06 1.10 7.71 -51.93 -0.40 0.70 16 29 H 0.06 1.14 6.48 -51.93 -0.34 0.80 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.71 7.07 -51.93 -0.37 0.35 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -34.10 324.32 -6.44 -40.54 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.40 Total: -2.68 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.01 Total: -15.18 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 0.77 Total: -28.04 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.01 Total: -17.50 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.10 -6.44 -40.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691697007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.212 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds