Wall clock time and date at job start Mon Mar 30 2020 07:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00071 * 2 1 4 4 O 1.20834 * 119.99811 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00103 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.70067 * 205.00174 * 5 3 2 7 7 C 1.52993 * 109.47469 * 60.00302 * 6 5 3 8 8 C 1.52996 * 109.47473 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47346 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.53498 * 109.70575 * 84.41944 * 5 3 2 19 19 C 1.53356 * 108.10315 * 177.90221 * 18 5 3 20 20 C 1.50448 * 109.46065 * 46.80043 * 19 18 5 21 21 C 1.30684 * 122.49343 * 342.53058 * 20 19 18 22 22 O 1.35134 * 123.34791 * 0.41160 * 21 20 19 23 23 H 1.08998 * 109.47159 * 299.99761 * 1 2 3 24 24 H 1.08996 * 109.47473 * 59.99693 * 1 2 3 25 25 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47694 * 299.99892 * 6 5 3 27 27 H 1.09004 * 109.46785 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47250 * 59.99618 * 7 6 5 29 29 H 1.09004 * 109.46862 * 299.99641 * 7 6 5 30 30 H 1.09004 * 109.47368 * 59.99787 * 8 7 6 31 31 H 1.08996 * 109.47261 * 300.00171 * 8 7 6 32 32 H 1.09000 * 109.46986 * 60.00254 * 9 8 7 33 33 H 1.08993 * 109.47662 * 300.00031 * 9 8 7 34 34 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.73047 * 297.53376 * 18 5 3 36 36 H 1.09001 * 109.72734 * 58.20514 * 18 5 3 37 37 H 1.09003 * 109.45413 * 286.81025 * 19 18 5 38 38 H 1.08997 * 109.48386 * 166.81040 * 19 18 5 39 39 H 1.07999 * 118.74959 * 162.50668 * 20 19 18 40 40 H 1.07998 * 118.32371 * 180.42813 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0133 2.6054 0.6083 7 6 3.5009 2.7060 2.0464 8 6 3.9485 4.0362 2.6554 9 6 3.4355 4.1370 4.0934 10 6 3.8769 5.4471 4.6935 11 1 4.4641 6.1388 4.1077 12 6 3.5309 5.7625 5.9903 13 7 3.9157 6.9060 6.5138 14 14 2.5158 4.5659 7.0038 15 1 1.0720 4.8550 6.8114 16 1 2.8052 3.1768 6.5656 17 1 2.8634 4.7145 8.4398 18 6 4.0900 1.1619 -1.4391 19 6 5.6170 1.2993 -1.4025 20 6 6.1730 0.4238 -0.3126 21 6 5.4318 -0.0508 0.6534 22 8 4.1065 0.1906 0.7601 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.6082 3.4287 0.0199 27 1 5.1021 2.6582 0.6064 28 1 3.9061 1.8827 2.6348 29 1 2.4122 2.6529 2.0486 30 1 3.5437 4.8597 2.0671 31 1 5.0371 4.0889 2.6532 32 1 3.8400 3.3136 4.6820 33 1 2.3468 4.0846 4.0954 34 1 3.6720 7.1281 7.4261 35 1 3.8178 0.1917 -1.8546 36 1 3.6627 1.9573 -2.0497 37 1 5.8835 2.3378 -1.2059 38 1 6.0327 0.9929 -2.3624 39 1 7.2245 0.1779 -0.3295 40 1 5.9026 -0.6671 1.4050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691697007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:19 Heat of formation + Delta-G solvation = -145.014185 kcal Electronic energy + Delta-G solvation = -21144.760670 eV Core-core repulsion = 17924.050041 eV Total energy + Delta-G solvation = -3220.710629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41603 -40.72543 -37.88356 -36.76220 -35.18166 -34.68850 -33.36097 -31.04522 -28.96914 -27.79143 -26.02075 -24.72767 -23.50801 -22.20732 -21.81392 -19.75734 -18.91983 -18.56211 -18.13649 -17.75670 -17.15475 -16.46432 -16.22002 -16.12625 -15.63388 -15.30234 -14.84791 -14.60293 -14.33326 -14.02873 -13.99185 -13.88744 -13.54184 -13.43648 -13.07911 -12.86388 -12.56010 -12.46832 -12.13892 -11.93656 -11.88122 -11.77103 -11.72604 -11.44730 -11.34162 -11.30061 -11.06502 -10.78894 -9.34614 -8.31998 -6.35773 0.80684 1.32553 1.33873 1.42213 1.46819 1.53974 2.33886 2.35456 3.02980 3.27796 3.45267 3.68022 3.98959 4.06970 4.10139 4.15640 4.24962 4.28613 4.38268 4.49635 4.58329 4.63446 4.66176 4.71875 4.81461 4.82511 4.93817 5.04869 5.08811 5.12128 5.16715 5.25449 5.35329 5.51411 5.59354 5.64887 5.65391 6.26629 6.46113 6.60941 6.71441 7.28902 8.84935 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.004864 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.810299 B = 5755.233970 C = 6480.240721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.352 6.352 3 C 0.481 3.519 4 O -0.513 6.513 5 C 0.129 3.871 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.091 4.091 9 C -0.012 4.012 10 C -0.534 4.534 11 H 0.033 0.967 12 C 0.005 3.995 13 N -0.950 5.950 14 Si 0.949 3.051 15 H -0.268 1.268 16 H -0.250 1.250 17 H -0.278 1.278 18 C -0.141 4.141 19 C -0.082 4.082 20 C -0.272 4.272 21 C 0.033 3.967 22 O -0.317 6.317 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.135 0.865 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.009 0.991 34 H 0.267 0.733 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -19.620 -18.625 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.323 3.677 4 O -0.401 6.401 5 C 0.089 3.911 6 C -0.159 4.159 7 C -0.148 4.148 8 C -0.129 4.129 9 C -0.050 4.050 10 C -0.572 4.572 11 H 0.052 0.948 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.772 3.228 15 H -0.193 1.193 16 H -0.173 1.173 17 H -0.204 1.204 18 C -0.178 4.178 19 C -0.118 4.118 20 C -0.292 4.292 21 C -0.028 4.028 22 O -0.231 6.231 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.153 0.847 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.161 0.839 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.771 -19.342 -18.364 26.682 hybrid contribution -0.532 0.416 0.761 1.017 sum -1.303 -18.926 -17.603 25.879 Atomic orbital electron populations 1.23634 0.74647 1.05987 1.02665 1.86572 1.25041 1.32193 1.82956 1.23329 0.90959 0.81756 0.71612 1.90722 1.66415 1.37143 1.45857 1.21676 0.85605 0.88449 0.95326 1.22067 1.02945 0.94570 0.96352 1.21527 0.99980 0.97808 0.95534 1.21280 1.00012 0.96057 0.95531 1.19538 0.95669 0.95033 0.94741 1.21520 1.33654 1.03519 0.98471 0.94850 1.26012 0.97000 0.97055 0.99124 1.70067 1.48344 1.24743 1.15961 0.85671 0.79121 0.80382 0.77590 1.19339 1.17324 1.20355 1.22295 0.98613 1.04921 0.91997 1.20480 0.91918 1.00110 0.99328 1.22778 1.01914 1.06498 0.97966 1.22456 0.81523 1.00076 0.98786 1.86021 1.23450 1.48188 1.65479 0.92486 0.91188 0.84689 0.89568 0.88239 0.91832 0.93626 0.93633 0.92618 0.96302 0.97287 0.92417 0.89122 0.88674 0.90146 0.87783 0.83930 0.80372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -8.77 10.32 -46.51 -0.48 -9.25 16 3 C 0.48 13.53 6.07 71.24 0.43 13.96 16 4 O -0.51 -16.98 14.80 21.94 0.32 -16.65 16 5 C 0.13 3.19 0.75 -11.37 -0.01 3.18 16 6 C -0.12 -3.38 3.50 30.59 0.11 -3.27 16 7 C -0.11 -3.89 4.79 30.59 0.15 -3.74 16 8 C -0.09 -3.85 5.15 30.59 0.16 -3.69 16 9 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 10 C -0.53 -32.51 9.66 25.60 0.25 -32.26 16 11 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 12 C 0.00 0.29 5.47 84.66 0.46 0.75 16 13 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 14 Si 0.95 46.40 27.47 68.60 1.88 48.29 16 15 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 C -0.14 -2.53 5.12 30.88 0.16 -2.37 16 19 C -0.08 -1.22 5.58 29.89 0.17 -1.05 16 20 C -0.27 -4.40 9.46 25.89 0.25 -4.16 16 21 C 0.03 0.64 10.47 68.10 0.71 1.35 16 22 O -0.32 -7.95 8.95 -70.97 -0.64 -8.58 16 23 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 24 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 25 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 2.41 7.88 -2.39 -0.02 2.39 16 27 H 0.10 2.48 5.99 -2.38 -0.01 2.47 16 28 H 0.06 2.19 7.71 -2.39 -0.02 2.18 16 29 H 0.04 1.73 6.48 -2.38 -0.02 1.71 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 33 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 34 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.22 7.07 -2.39 -0.02 1.21 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -74.17 324.32 6.49 -67.68 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.95 Total: 9.91 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 4.15 Total: -30.18 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.30 Total: -61.20 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.79 Total: -34.49 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.29 kcal Total: -74.17 6.49 -67.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691697007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.336 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds