Wall clock time and date at job start Mon Mar 30 2020 07:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46903 * 2 1 4 4 C 1.52998 * 109.47232 * 239.99220 * 2 1 3 5 5 C 1.50703 * 109.46642 * 66.58533 * 4 2 1 6 6 H 1.07996 * 120.00142 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99743 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99926 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47158 * 270.00262 * 9 7 5 11 11 H 1.48494 * 109.47098 * 150.00202 * 9 7 5 12 12 H 1.48502 * 109.47165 * 29.99920 * 9 7 5 13 13 C 1.52999 * 109.46885 * 119.99536 * 2 1 3 14 14 C 1.50701 * 110.43531 * 66.97466 * 13 2 1 15 15 O 1.20830 * 120.00111 * 112.39605 * 14 13 2 16 16 O 1.34227 * 120.00071 * 292.39253 * 14 13 2 17 17 C 1.54816 * 110.49001 * 304.28593 * 13 2 1 18 18 C 1.54989 * 102.09215 * 220.44485 * 17 13 2 19 19 O 1.44377 * 103.49211 * 37.02004 * 18 17 13 20 20 C 1.43739 * 106.97681 * 319.93954 * 19 18 17 21 21 H 1.08999 * 109.87970 * 267.08188 * 20 19 18 22 22 C 1.53007 * 110.00201 * 146.00612 * 20 19 18 23 23 C 1.52997 * 117.50038 * 125.55308 * 22 20 19 24 24 C 1.52995 * 117.49958 * 56.92571 * 22 20 19 25 25 H 1.08999 * 109.47019 * 61.35782 * 1 2 3 26 26 H 1.09001 * 109.47305 * 181.35809 * 1 2 3 27 27 H 1.09004 * 109.47119 * 301.35891 * 1 2 3 28 28 H 1.08995 * 109.47208 * 306.58800 * 4 2 1 29 29 H 1.08996 * 109.47238 * 186.58325 * 4 2 1 30 30 H 0.96998 * 119.99550 * 359.97438 * 8 7 5 31 31 H 0.96700 * 116.99827 * 180.02562 * 16 14 13 32 32 H 1.08997 * 110.90373 * 338.64319 * 17 13 2 33 33 H 1.09002 * 110.90336 * 102.24303 * 17 13 2 34 34 H 1.09002 * 110.62049 * 278.52369 * 18 17 13 35 35 H 1.08995 * 110.75170 * 155.59202 * 18 17 13 36 36 H 1.09001 * 115.54748 * 271.26106 * 22 20 19 37 37 H 1.09004 * 117.49657 * 359.97438 * 23 22 20 38 38 H 1.08998 * 117.50412 * 145.02051 * 23 22 20 39 39 H 1.08998 * 117.50169 * 214.97947 * 24 22 20 40 40 H 1.08996 * 117.50023 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6751 0.0768 -2.4742 6 1 1.1340 1.0058 -2.3721 7 6 2.0331 -0.3786 -3.7255 8 7 2.6924 -1.5097 -3.8499 9 14 1.5814 0.6111 -5.2441 10 1 0.2503 0.1774 -5.7397 11 1 2.6000 0.3880 -6.3013 12 1 1.5346 2.0545 -4.8984 13 6 2.0400 -0.7212 1.2493 14 6 1.6946 -2.1868 1.1887 15 8 2.5714 -3.0098 1.0715 16 8 0.4128 -2.5780 1.2648 17 6 1.4503 -0.0750 2.5267 18 6 2.6671 -0.0847 3.4867 19 8 3.7846 0.1971 2.6171 20 6 3.5620 -0.5315 1.3982 21 1 4.0531 -1.5030 1.4521 22 6 4.1063 0.2611 0.2079 23 6 5.1048 -0.4434 -0.7127 24 6 5.5843 0.6552 0.2381 25 1 -0.3633 0.4926 -0.9019 26 1 -0.3634 -1.0274 0.0244 27 1 -0.3633 0.5348 0.8776 28 1 1.5837 -1.7093 -1.3099 29 1 3.1236 -0.8246 -1.1921 30 1 2.9273 -2.0233 -3.0613 31 1 0.2407 -3.5286 1.2218 32 1 1.1187 0.9444 2.3293 33 1 0.6346 -0.6775 2.9263 34 1 2.7806 -1.0636 3.9526 35 1 2.5662 0.6909 4.2458 36 1 3.4078 0.9620 -0.2491 37 1 5.3742 -1.4714 -0.4702 38 1 5.0633 -0.2062 -1.7758 39 1 5.8583 1.6151 -0.1994 40 1 6.1690 0.3495 1.1057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695783762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:45 Heat of formation + Delta-G solvation = -111.173671 kcal Electronic energy + Delta-G solvation = -22717.129665 eV Core-core repulsion = 19497.886471 eV Total energy + Delta-G solvation = -3219.243194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18594 -38.88303 -36.49555 -35.89611 -35.31785 -32.81833 -30.52344 -28.79863 -26.70416 -24.56694 -23.64515 -22.46741 -21.79801 -21.08931 -20.77609 -18.41787 -17.59847 -17.12401 -16.51254 -16.09207 -15.31320 -15.05039 -14.68923 -14.58774 -13.77415 -13.66864 -13.43450 -12.91093 -12.58767 -12.27475 -12.07262 -11.77521 -11.68136 -11.32422 -11.18084 -11.04673 -10.98521 -10.84749 -10.64418 -10.44060 -10.25112 -10.14529 -9.96702 -9.64708 -9.52649 -9.33875 -9.17626 -8.46780 -8.21910 -6.30783 -3.99414 2.50325 3.21520 3.43884 3.46756 3.62239 3.83437 4.46466 4.55448 4.58987 4.77757 4.93858 5.14443 5.24287 5.44854 5.50339 5.51044 5.55486 5.66446 5.69852 5.74188 5.88659 5.98100 6.00711 6.11388 6.14779 6.19917 6.37462 6.50445 6.66462 6.73174 6.73917 6.86426 6.89723 7.01710 7.03872 7.45543 7.61148 8.15439 8.23516 8.51102 8.92879 9.71105 11.09139 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.007957 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.435211 B = 3518.222855 C = 4071.733350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 H 0.083 0.917 4 C -0.011 4.011 5 C -0.593 4.593 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.912 5.912 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.289 1.289 13 C -0.075 4.075 14 C 0.503 3.497 15 O -0.515 6.515 16 O -0.508 6.508 17 C -0.143 4.143 18 C 0.041 3.959 19 O -0.365 6.365 20 C 0.120 3.880 21 H 0.086 0.914 22 C -0.150 4.150 23 C -0.157 4.157 24 C -0.178 4.178 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.036 0.964 28 H -0.003 1.003 29 H 0.050 0.950 30 H 0.270 0.730 31 H 0.403 0.597 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 2.255 12.867 13.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 H 0.101 0.899 4 C -0.048 4.048 5 C -0.631 4.631 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.548 5.548 9 Si 0.895 3.105 10 H -0.217 1.217 11 H -0.211 1.211 12 H -0.216 1.216 13 C -0.076 4.076 14 C 0.346 3.654 15 O -0.403 6.403 16 O -0.319 6.319 17 C -0.180 4.180 18 C -0.035 4.035 19 O -0.284 6.284 20 C 0.063 3.937 21 H 0.104 0.896 22 C -0.168 4.168 23 C -0.194 4.194 24 C -0.215 4.215 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.261 0.739 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.232 2.608 11.243 11.607 hybrid contribution -0.606 -0.948 1.545 1.911 sum -1.838 1.661 12.789 13.026 Atomic orbital electron populations 1.21924 0.95156 1.02187 1.00712 1.21308 0.95822 0.99190 0.91755 0.89930 1.19886 0.98563 0.94795 0.91539 1.21951 1.40004 1.08923 0.92253 0.93368 1.25711 0.94661 0.97338 1.01080 1.70733 1.36758 1.13632 1.33725 0.83588 0.76369 0.74945 0.75624 1.21687 1.21118 1.21560 1.21984 0.97035 0.88619 0.99965 1.22994 0.79802 0.91928 0.70673 1.90668 1.49135 1.54779 1.45731 1.84583 1.29613 1.32591 1.85134 1.23291 0.98519 1.02837 0.93367 1.23571 0.85446 1.00885 0.93633 1.88905 1.43270 1.70403 1.25855 1.22312 0.91709 0.95386 0.84281 0.89610 1.22640 0.92906 1.03831 0.97403 1.22949 1.01904 0.96912 0.97680 1.22934 0.97042 0.99751 1.01797 0.91533 0.92135 0.94487 0.98436 0.93259 0.91967 0.73934 0.88835 0.89474 0.92692 0.88682 0.85008 0.89336 0.87621 0.89155 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.46 37.16 0.31 -2.27 16 2 C -0.06 -1.22 1.05 -90.62 -0.10 -1.31 16 3 H 0.08 1.62 6.08 -51.93 -0.32 1.31 16 4 C -0.01 -0.28 2.55 -27.88 -0.07 -0.35 16 5 C -0.59 -15.93 8.40 -34.44 -0.29 -16.22 16 6 H 0.05 1.28 7.17 -52.49 -0.38 0.90 16 7 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 8 N -0.91 -27.39 13.65 55.43 0.76 -26.63 16 9 Si 1.07 25.04 29.90 -169.99 -5.08 19.95 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 C -0.07 -1.28 0.40 -154.13 -0.06 -1.34 16 14 C 0.50 9.01 5.47 36.01 0.20 9.21 16 15 O -0.52 -10.56 16.08 -18.75 -0.30 -10.86 16 16 O -0.51 -7.45 10.69 -39.25 -0.42 -7.87 16 17 C -0.14 -1.92 5.18 -24.72 -0.13 -2.05 16 18 C 0.04 0.54 7.72 38.21 0.29 0.83 16 19 O -0.37 -6.01 11.06 -35.23 -0.39 -6.40 16 20 C 0.12 2.16 3.15 -26.15 -0.08 2.07 16 21 H 0.09 1.67 6.27 -51.93 -0.33 1.35 16 22 C -0.15 -2.80 3.33 -90.62 -0.30 -3.11 16 23 C -0.16 -3.01 8.25 -26.73 -0.22 -3.23 16 24 C -0.18 -2.97 10.12 -26.73 -0.27 -3.24 16 25 H 0.07 1.31 7.03 -51.93 -0.36 0.94 16 26 H 0.06 1.11 5.87 -51.93 -0.30 0.81 16 27 H 0.04 0.55 6.83 -51.93 -0.35 0.20 16 28 H 0.00 -0.07 7.22 -51.93 -0.38 -0.44 16 29 H 0.05 1.21 3.33 -51.93 -0.17 1.04 16 30 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 31 H 0.40 4.18 9.10 45.56 0.41 4.60 16 32 H 0.09 1.20 7.28 -51.93 -0.38 0.82 16 33 H 0.09 1.05 7.51 -51.93 -0.39 0.66 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.13 2.66 4.80 -51.93 -0.25 2.41 16 37 H 0.09 1.68 8.05 -51.93 -0.42 1.26 16 38 H 0.11 2.23 8.09 -51.93 -0.42 1.80 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -31.74 306.66 -6.44 -38.18 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.81 Total: 9.67 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.81 Total: -20.65 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.76 Total: -26.63 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.11 Total: -25.13 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.74 -6.44 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695783762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.993 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds