Wall clock time and date at job start Mon Mar 30 2020 07:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46903 * 2 1 4 4 C 1.52998 * 109.47232 * 239.99220 * 2 1 3 5 5 C 1.50703 * 109.46642 * 66.58533 * 4 2 1 6 6 H 1.07996 * 120.00142 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99743 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99926 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47158 * 270.00262 * 9 7 5 11 11 H 1.48494 * 109.47098 * 150.00202 * 9 7 5 12 12 H 1.48502 * 109.47165 * 29.99920 * 9 7 5 13 13 C 1.52999 * 109.46885 * 119.99536 * 2 1 3 14 14 C 1.50701 * 110.43531 * 66.97466 * 13 2 1 15 15 O 1.20830 * 120.00111 * 112.39605 * 14 13 2 16 16 O 1.34227 * 120.00071 * 292.39253 * 14 13 2 17 17 C 1.54816 * 110.49001 * 304.28593 * 13 2 1 18 18 C 1.54989 * 102.09215 * 220.44485 * 17 13 2 19 19 O 1.44377 * 103.49211 * 37.02004 * 18 17 13 20 20 C 1.43739 * 106.97681 * 319.93954 * 19 18 17 21 21 H 1.08999 * 109.87970 * 267.08188 * 20 19 18 22 22 C 1.53007 * 110.00201 * 146.00612 * 20 19 18 23 23 C 1.52997 * 117.50038 * 125.55308 * 22 20 19 24 24 C 1.52995 * 117.49958 * 56.92571 * 22 20 19 25 25 H 1.08999 * 109.47019 * 61.35782 * 1 2 3 26 26 H 1.09001 * 109.47305 * 181.35809 * 1 2 3 27 27 H 1.09004 * 109.47119 * 301.35891 * 1 2 3 28 28 H 1.08995 * 109.47208 * 306.58800 * 4 2 1 29 29 H 1.08996 * 109.47238 * 186.58325 * 4 2 1 30 30 H 0.96998 * 119.99550 * 359.97438 * 8 7 5 31 31 H 0.96700 * 116.99827 * 180.02562 * 16 14 13 32 32 H 1.08997 * 110.90373 * 338.64319 * 17 13 2 33 33 H 1.09002 * 110.90336 * 102.24303 * 17 13 2 34 34 H 1.09002 * 110.62049 * 278.52369 * 18 17 13 35 35 H 1.08995 * 110.75170 * 155.59202 * 18 17 13 36 36 H 1.09001 * 115.54748 * 271.26106 * 22 20 19 37 37 H 1.09004 * 117.49657 * 359.97438 * 23 22 20 38 38 H 1.08998 * 117.50412 * 145.02051 * 23 22 20 39 39 H 1.08998 * 117.50169 * 214.97947 * 24 22 20 40 40 H 1.08996 * 117.50023 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6751 0.0768 -2.4742 6 1 1.1340 1.0058 -2.3721 7 6 2.0331 -0.3786 -3.7255 8 7 2.6924 -1.5097 -3.8499 9 14 1.5814 0.6111 -5.2441 10 1 0.2503 0.1774 -5.7397 11 1 2.6000 0.3880 -6.3013 12 1 1.5346 2.0545 -4.8984 13 6 2.0400 -0.7212 1.2493 14 6 1.6946 -2.1868 1.1887 15 8 2.5714 -3.0098 1.0715 16 8 0.4128 -2.5780 1.2648 17 6 1.4503 -0.0750 2.5267 18 6 2.6671 -0.0847 3.4867 19 8 3.7846 0.1971 2.6171 20 6 3.5620 -0.5315 1.3982 21 1 4.0531 -1.5030 1.4521 22 6 4.1063 0.2611 0.2079 23 6 5.1048 -0.4434 -0.7127 24 6 5.5843 0.6552 0.2381 25 1 -0.3633 0.4926 -0.9019 26 1 -0.3634 -1.0274 0.0244 27 1 -0.3633 0.5348 0.8776 28 1 1.5837 -1.7093 -1.3099 29 1 3.1236 -0.8246 -1.1921 30 1 2.9273 -2.0233 -3.0613 31 1 0.2407 -3.5286 1.2218 32 1 1.1187 0.9444 2.3293 33 1 0.6346 -0.6775 2.9263 34 1 2.7806 -1.0636 3.9526 35 1 2.5662 0.6909 4.2458 36 1 3.4078 0.9620 -0.2491 37 1 5.3742 -1.4714 -0.4702 38 1 5.0633 -0.2062 -1.7758 39 1 5.8583 1.6151 -0.1994 40 1 6.1690 0.3495 1.1057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695783762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:45 Heat of formation + Delta-G solvation = -131.895288 kcal Electronic energy + Delta-G solvation = -22718.028222 eV Core-core repulsion = 19497.886471 eV Total energy + Delta-G solvation = -3220.141751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.55927 -40.23090 -37.91051 -37.29361 -36.84846 -34.76292 -31.94038 -30.12757 -28.49440 -25.95257 -25.54757 -23.70811 -23.23269 -22.70885 -22.20189 -19.85125 -18.99687 -18.90263 -18.05039 -17.51998 -16.68132 -16.41547 -16.05188 -15.95344 -15.63234 -15.09377 -14.95259 -14.40707 -14.09181 -13.89566 -13.58805 -13.28517 -13.11345 -12.89275 -12.67002 -12.52241 -12.47285 -12.34654 -12.21656 -11.95882 -11.87054 -11.72417 -11.52445 -11.20143 -11.00430 -10.85153 -10.67338 -10.49761 -10.27860 -8.56094 -6.24042 1.09841 1.52477 1.60825 1.77253 1.94709 2.55828 2.59693 3.11456 3.27167 3.27649 3.46067 3.65636 3.89901 4.03624 4.10332 4.17518 4.24114 4.33624 4.38925 4.44163 4.53671 4.66032 4.73707 4.78469 4.81086 4.89553 4.99737 5.01577 5.11592 5.21583 5.25630 5.29653 5.43424 5.51500 5.57622 5.71833 5.81454 6.10896 6.32086 6.70599 6.88601 7.54922 8.83321 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.007957 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.435211 B = 3518.222855 C = 4071.733350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 H 0.084 0.916 4 C -0.008 4.008 5 C -0.593 4.593 6 H 0.051 0.949 7 C -0.039 4.039 8 N -0.941 5.941 9 Si 1.110 2.890 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C -0.078 4.078 14 C 0.502 3.498 15 O -0.550 6.550 16 O -0.498 6.498 17 C -0.134 4.134 18 C 0.037 3.963 19 O -0.374 6.374 20 C 0.126 3.874 21 H 0.064 0.936 22 C -0.157 4.157 23 C -0.176 4.176 24 C -0.148 4.148 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.075 0.925 28 H -0.038 1.038 29 H 0.044 0.956 30 H 0.252 0.748 31 H 0.422 0.578 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 4.093 14.716 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 H 0.102 0.898 4 C -0.044 4.044 5 C -0.631 4.631 6 H 0.070 0.930 7 C -0.236 4.236 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.079 4.079 14 C 0.346 3.654 15 O -0.441 6.441 16 O -0.311 6.311 17 C -0.172 4.172 18 C -0.039 4.039 19 O -0.293 6.293 20 C 0.069 3.931 21 H 0.082 0.918 22 C -0.174 4.174 23 C -0.214 4.214 24 C -0.184 4.184 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.094 0.906 28 H -0.020 1.020 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.283 0.717 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.433 4.449 13.124 14.069 hybrid contribution -0.277 -1.558 1.018 1.882 sum -2.710 2.891 14.142 14.687 Atomic orbital electron populations 1.21872 0.93827 1.02229 1.01554 1.21106 0.96831 0.98690 0.90623 0.89793 1.19808 0.98131 0.93148 0.93333 1.22335 1.38624 1.08878 0.93255 0.93031 1.27130 0.94238 0.97516 1.04740 1.70876 1.39177 1.15077 1.32785 0.83011 0.76383 0.74871 0.72388 1.20441 1.21508 1.19171 1.21946 0.96951 0.88272 1.00724 1.23204 0.80216 0.92143 0.69834 1.90659 1.50298 1.55774 1.47389 1.84517 1.27743 1.34487 1.84327 1.23354 0.99224 1.03504 0.91081 1.23870 0.83804 1.02654 0.93525 1.88882 1.44912 1.70029 1.25504 1.22045 0.92051 0.94282 0.84762 0.91776 1.22574 0.93736 1.03569 0.97561 1.22748 1.04448 0.97533 0.96621 1.23001 0.95526 0.99095 1.00806 0.93504 0.92671 0.90613 1.01954 0.93839 0.93825 0.71723 0.87401 0.87453 0.92100 0.85159 0.86485 0.90105 0.90440 0.87517 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.46 71.98 0.61 -4.13 16 2 C -0.05 -2.07 1.05 -10.79 -0.01 -2.08 16 3 H 0.08 3.21 6.08 -2.39 -0.01 3.19 16 4 C -0.01 -0.38 2.55 29.85 0.08 -0.31 16 5 C -0.59 -32.35 8.40 25.60 0.22 -32.13 16 6 H 0.05 2.73 7.17 -2.91 -0.02 2.71 16 7 C -0.04 -2.23 5.46 84.66 0.46 -1.77 16 8 N -0.94 -58.63 13.65 21.45 0.29 -58.33 16 9 Si 1.11 50.51 29.90 68.60 2.05 52.56 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 C -0.08 -2.56 0.40 -51.94 -0.02 -2.58 16 14 C 0.50 17.75 5.47 71.24 0.39 18.14 16 15 O -0.55 -23.07 16.08 21.95 0.35 -22.71 16 16 O -0.50 -13.87 10.69 -51.39 -0.55 -14.42 16 17 C -0.13 -3.13 5.18 31.89 0.17 -2.97 16 18 C 0.04 0.83 7.72 72.66 0.56 1.39 16 19 O -0.37 -11.42 11.06 -148.98 -1.65 -13.07 16 20 C 0.13 4.45 3.15 30.97 0.10 4.55 16 21 H 0.06 2.56 6.27 -2.39 -0.01 2.54 16 22 C -0.16 -5.88 3.33 -10.79 -0.04 -5.91 16 23 C -0.18 -7.04 8.25 30.59 0.25 -6.79 16 24 C -0.15 -4.79 10.12 30.59 0.31 -4.48 16 25 H 0.05 1.78 7.03 -2.39 -0.02 1.76 16 26 H 0.05 1.94 5.87 -2.39 -0.01 1.93 16 27 H 0.08 2.00 6.83 -2.38 -0.02 1.99 16 28 H -0.04 -2.14 7.22 -2.39 -0.02 -2.15 16 29 H 0.04 2.24 3.33 -2.39 -0.01 2.23 16 30 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 31 H 0.42 8.22 9.10 -74.06 -0.67 7.54 16 32 H 0.11 2.25 7.28 -2.39 -0.02 2.23 16 33 H 0.11 2.10 7.51 -2.39 -0.02 2.08 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.12 4.74 4.80 -2.39 -0.01 4.73 16 37 H 0.08 3.29 8.05 -2.39 -0.02 3.27 16 38 H 0.08 3.50 8.09 -2.39 -0.02 3.48 16 39 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -70.94 306.66 4.06 -66.88 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.49 Total: 28.19 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.07 Total: -39.09 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.29 Total: -58.33 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -1.84 Total: -50.20 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Total: -70.94 4.06 -66.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695783762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.017 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds