Wall clock time and date at job start Mon Mar 30 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47195 * 2 1 4 4 C 1.53003 * 109.46664 * 240.00150 * 2 1 3 5 5 C 1.50703 * 109.46930 * 64.99931 * 4 2 1 6 6 H 1.08002 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99837 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99525 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00039 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46978 * 89.99548 * 9 7 5 11 11 H 1.48496 * 109.47085 * 209.99575 * 9 7 5 12 12 H 1.48501 * 109.47344 * 329.99769 * 9 7 5 13 13 C 1.53004 * 109.47142 * 120.00429 * 2 1 3 14 14 C 1.50705 * 110.43596 * 60.69914 * 13 2 1 15 15 O 1.20823 * 119.99733 * 117.72537 * 14 13 2 16 16 O 1.34228 * 119.99844 * 298.00376 * 14 13 2 17 17 C 1.54806 * 110.48383 * 183.24024 * 13 2 1 18 18 C 1.55001 * 102.09030 * 97.92923 * 17 13 2 19 19 O 1.44382 * 103.48692 * 37.02158 * 18 17 13 20 20 C 1.43737 * 106.97725 * 319.93956 * 19 18 17 21 21 H 1.09007 * 109.87829 * 267.09199 * 20 19 18 22 22 C 1.53000 * 109.88044 * 145.94065 * 20 19 18 23 23 C 1.53006 * 117.49991 * 136.02165 * 22 20 19 24 24 C 1.52998 * 117.50125 * 67.39988 * 22 20 19 25 25 H 1.09000 * 109.47341 * 59.99262 * 1 2 3 26 26 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47088 * 299.99445 * 1 2 3 28 28 H 1.08999 * 109.47116 * 184.99851 * 4 2 1 29 29 H 1.08997 * 109.47414 * 305.00222 * 4 2 1 30 30 H 0.97003 * 119.99271 * 180.02562 * 8 7 5 31 31 H 0.96697 * 117.00123 * 179.72675 * 16 14 13 32 32 H 1.09002 * 110.90868 * 216.12605 * 17 13 2 33 33 H 1.09002 * 110.91373 * 339.69997 * 17 13 2 34 34 H 1.09000 * 110.62022 * 155.52342 * 18 17 13 35 35 H 1.08995 * 110.61793 * 278.36553 * 18 17 13 36 36 H 1.09005 * 115.54623 * 281.73133 * 22 20 19 37 37 H 1.09001 * 117.49541 * 0.02562 * 23 22 20 38 38 H 1.09005 * 117.49499 * 145.01783 * 23 22 20 39 39 H 1.08994 * 117.50054 * 214.98428 * 24 22 20 40 40 H 1.09007 * 117.49408 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6411 0.0571 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9930 -0.4016 -3.7284 8 7 1.6454 0.2780 -4.7993 9 14 2.9632 -1.9882 -3.9030 10 1 2.0239 -3.1324 -4.0202 11 1 3.8120 -1.9180 -5.1194 12 1 3.8249 -2.1756 -2.7082 13 6 2.0400 -0.7214 1.2492 14 6 1.5638 -2.1511 1.2625 15 8 2.3650 -3.0550 1.2305 16 8 0.2495 -2.4204 1.3042 17 6 3.5857 -0.6644 1.3146 18 6 3.8262 0.5231 2.2812 19 8 2.7630 0.3903 3.2489 20 6 1.5807 0.0120 2.5243 21 1 1.0104 0.9011 2.2554 22 6 0.7221 -0.9211 3.3804 23 6 -0.7862 -0.6652 3.4092 24 6 0.0700 -0.3309 4.6323 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.1262 -0.7995 -1.2058 29 1 1.6053 -1.7197 -1.2953 30 1 1.8926 -0.0450 -5.6800 31 1 -0.0078 -3.3525 1.3070 32 1 3.9919 -1.5887 1.7253 33 1 4.0093 -0.4585 0.3316 34 1 4.7989 0.4335 2.7648 35 1 3.7489 1.4719 1.7502 36 1 1.0582 -1.9569 3.4287 37 1 -1.1666 0.1676 2.8179 38 1 -1.4426 -1.5328 3.4763 39 1 -0.0231 -0.9784 5.5041 40 1 0.2532 0.7222 4.8462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695783764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:52 Heat of formation + Delta-G solvation = -116.115574 kcal Electronic energy + Delta-G solvation = -22475.487293 eV Core-core repulsion = 19256.029802 eV Total energy + Delta-G solvation = -3219.457491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22104 -38.79631 -36.76780 -35.77224 -35.52331 -32.54954 -30.62962 -29.37084 -27.31492 -24.64926 -23.51120 -22.45751 -22.26240 -21.57196 -19.95600 -18.98901 -17.64948 -17.29181 -16.64226 -15.82658 -15.72611 -15.23131 -14.66835 -14.42893 -14.21601 -13.75739 -13.40099 -13.07604 -12.80463 -12.36605 -12.17129 -11.94381 -11.68704 -11.59161 -11.35789 -11.30917 -11.10894 -10.96376 -10.72981 -10.39854 -10.32105 -10.24254 -10.11630 -9.86672 -9.79673 -9.56306 -9.41058 -9.16374 -8.57786 -6.09006 -4.06977 2.51956 3.26821 3.28150 3.36170 3.41941 3.57422 4.19885 4.41684 4.43549 4.54100 4.91757 5.06703 5.10033 5.19487 5.24991 5.29855 5.37069 5.41496 5.52822 5.67188 5.78392 5.84658 5.90833 5.94681 6.04887 6.08505 6.15008 6.21108 6.24256 6.38421 6.70196 6.74172 6.79465 6.92081 7.06904 7.16486 7.29987 7.72074 8.19158 8.47175 8.95169 9.53652 11.03864 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.006709 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.036293 B = 4172.396032 C = 4282.409546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 H 0.079 0.921 4 C -0.010 4.010 5 C -0.515 4.515 6 H 0.076 0.924 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.265 1.265 13 C -0.076 4.076 14 C 0.511 3.489 15 O -0.523 6.523 16 O -0.499 6.499 17 C -0.148 4.148 18 C 0.048 3.952 19 O -0.371 6.371 20 C 0.122 3.878 21 H 0.086 0.914 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.175 4.175 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.008 0.992 30 H 0.263 0.737 31 H 0.397 0.603 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -1.739 16.385 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 H 0.098 0.902 4 C -0.048 4.048 5 C -0.553 4.553 6 H 0.094 0.906 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.699 3.301 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.189 1.189 13 C -0.077 4.077 14 C 0.355 3.645 15 O -0.412 6.412 16 O -0.309 6.309 17 C -0.185 4.185 18 C -0.029 4.029 19 O -0.290 6.290 20 C 0.064 3.936 21 H 0.104 0.896 22 C -0.171 4.171 23 C -0.187 4.187 24 C -0.212 4.212 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.254 0.746 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.515 -1.529 16.403 16.544 hybrid contribution 0.433 -1.641 -0.623 1.808 sum -1.082 -3.171 15.781 16.132 Atomic orbital electron populations 1.22000 0.94349 1.02972 1.00852 1.21132 0.96772 0.99030 0.91094 0.90231 1.19729 0.96208 0.95584 0.93233 1.21032 1.35758 1.09660 0.88846 0.90586 1.24977 0.95476 0.96758 0.95956 1.69902 1.46838 1.39162 0.98052 0.86897 0.80874 0.84422 0.77888 1.20372 1.21262 1.18924 1.22147 0.96826 0.89644 0.99095 1.22780 0.79911 0.91856 0.69983 1.90665 1.55791 1.48107 1.46610 1.84773 1.26514 1.34425 1.85238 1.23350 0.92612 1.00209 1.02340 1.23588 0.91496 0.97767 0.90027 1.88864 1.19014 1.89621 1.31510 1.22327 0.86990 0.95956 0.88300 0.89634 1.22280 0.95012 0.98885 1.00923 1.22873 0.91960 1.03408 1.00505 1.22904 1.04345 1.01878 0.92058 0.91216 0.91286 0.94339 0.96136 0.97379 0.92704 0.74572 0.89193 0.88085 0.88757 0.91487 0.88331 0.88372 0.88583 0.89097 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.30 37.16 0.31 -2.20 16 2 C -0.06 -1.15 1.52 -90.62 -0.14 -1.28 16 3 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 4 C -0.01 -0.24 3.04 -27.88 -0.08 -0.33 16 5 C -0.52 -14.04 8.96 -34.44 -0.31 -14.35 16 6 H 0.08 2.20 7.30 -52.49 -0.38 1.82 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 9 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 13 C -0.08 -1.24 0.39 -154.13 -0.06 -1.30 16 14 C 0.51 8.60 3.98 36.01 0.14 8.75 16 15 O -0.52 -10.16 16.23 -18.75 -0.30 -10.47 16 16 O -0.50 -6.72 8.12 -39.25 -0.32 -7.04 16 17 C -0.15 -2.35 5.82 -24.72 -0.14 -2.49 16 18 C 0.05 0.64 7.72 38.21 0.29 0.93 16 19 O -0.37 -5.53 11.18 -35.23 -0.39 -5.93 16 20 C 0.12 1.76 2.70 -26.16 -0.07 1.69 16 21 H 0.09 1.21 6.42 -51.93 -0.33 0.88 16 22 C -0.15 -1.97 3.58 -90.62 -0.32 -2.30 16 23 C -0.15 -1.63 9.33 -26.73 -0.25 -1.88 16 24 C -0.17 -1.91 10.25 -26.73 -0.27 -2.19 16 25 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 26 H 0.07 1.19 5.53 -51.93 -0.29 0.90 16 27 H 0.04 0.56 5.51 -51.93 -0.29 0.27 16 28 H 0.02 0.48 5.27 -51.93 -0.27 0.21 16 29 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.40 3.73 9.10 45.56 0.41 4.15 16 32 H 0.09 1.48 6.95 -51.93 -0.36 1.12 16 33 H 0.10 1.69 6.07 -51.93 -0.32 1.38 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.37 6.41 -51.93 -0.33 1.03 16 37 H 0.10 1.07 7.08 -51.93 -0.37 0.70 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -32.14 305.40 -6.26 -38.40 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.95 Total: 4.76 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.00 Total: -15.05 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.77 Total: -26.48 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -1.02 Total: -23.44 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.14 -6.26 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695783764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.720 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds