Wall clock time and date at job start Mon Mar 30 2020 07:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47195 * 2 1 4 4 C 1.53003 * 109.46664 * 240.00150 * 2 1 3 5 5 C 1.50703 * 109.46930 * 64.99931 * 4 2 1 6 6 H 1.08002 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99837 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99525 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00039 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46978 * 89.99548 * 9 7 5 11 11 H 1.48496 * 109.47085 * 209.99575 * 9 7 5 12 12 H 1.48501 * 109.47344 * 329.99769 * 9 7 5 13 13 C 1.53004 * 109.47142 * 120.00429 * 2 1 3 14 14 C 1.50705 * 110.43596 * 60.69914 * 13 2 1 15 15 O 1.20823 * 119.99733 * 117.72537 * 14 13 2 16 16 O 1.34228 * 119.99844 * 298.00376 * 14 13 2 17 17 C 1.54806 * 110.48383 * 183.24024 * 13 2 1 18 18 C 1.55001 * 102.09030 * 97.92923 * 17 13 2 19 19 O 1.44382 * 103.48692 * 37.02158 * 18 17 13 20 20 C 1.43737 * 106.97725 * 319.93956 * 19 18 17 21 21 H 1.09007 * 109.87829 * 267.09199 * 20 19 18 22 22 C 1.53000 * 109.88044 * 145.94065 * 20 19 18 23 23 C 1.53006 * 117.49991 * 136.02165 * 22 20 19 24 24 C 1.52998 * 117.50125 * 67.39988 * 22 20 19 25 25 H 1.09000 * 109.47341 * 59.99262 * 1 2 3 26 26 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47088 * 299.99445 * 1 2 3 28 28 H 1.08999 * 109.47116 * 184.99851 * 4 2 1 29 29 H 1.08997 * 109.47414 * 305.00222 * 4 2 1 30 30 H 0.97003 * 119.99271 * 180.02562 * 8 7 5 31 31 H 0.96697 * 117.00123 * 179.72675 * 16 14 13 32 32 H 1.09002 * 110.90868 * 216.12605 * 17 13 2 33 33 H 1.09002 * 110.91373 * 339.69997 * 17 13 2 34 34 H 1.09000 * 110.62022 * 155.52342 * 18 17 13 35 35 H 1.08995 * 110.61793 * 278.36553 * 18 17 13 36 36 H 1.09005 * 115.54623 * 281.73133 * 22 20 19 37 37 H 1.09001 * 117.49541 * 0.02562 * 23 22 20 38 38 H 1.09005 * 117.49499 * 145.01783 * 23 22 20 39 39 H 1.08994 * 117.50054 * 214.98428 * 24 22 20 40 40 H 1.09007 * 117.49408 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6411 0.0571 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9930 -0.4016 -3.7284 8 7 1.6454 0.2780 -4.7993 9 14 2.9632 -1.9882 -3.9030 10 1 2.0239 -3.1324 -4.0202 11 1 3.8120 -1.9180 -5.1194 12 1 3.8249 -2.1756 -2.7082 13 6 2.0400 -0.7214 1.2492 14 6 1.5638 -2.1511 1.2625 15 8 2.3650 -3.0550 1.2305 16 8 0.2495 -2.4204 1.3042 17 6 3.5857 -0.6644 1.3146 18 6 3.8262 0.5231 2.2812 19 8 2.7630 0.3903 3.2489 20 6 1.5807 0.0120 2.5243 21 1 1.0104 0.9011 2.2554 22 6 0.7221 -0.9211 3.3804 23 6 -0.7862 -0.6652 3.4092 24 6 0.0700 -0.3309 4.6323 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.1262 -0.7995 -1.2058 29 1 1.6053 -1.7197 -1.2953 30 1 1.8926 -0.0450 -5.6800 31 1 -0.0078 -3.3525 1.3070 32 1 3.9919 -1.5887 1.7253 33 1 4.0093 -0.4585 0.3316 34 1 4.7989 0.4335 2.7648 35 1 3.7489 1.4719 1.7502 36 1 1.0582 -1.9569 3.4287 37 1 -1.1666 0.1676 2.8179 38 1 -1.4426 -1.5328 3.4763 39 1 -0.0231 -0.9784 5.5041 40 1 0.2532 0.7222 4.8462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695783764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:51 Heat of formation + Delta-G solvation = -137.167501 kcal Electronic energy + Delta-G solvation = -22476.400173 eV Core-core repulsion = 19256.029802 eV Total energy + Delta-G solvation = -3220.370371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.46518 -39.99583 -37.75985 -37.16597 -36.83968 -34.57977 -32.06879 -30.72193 -28.92749 -26.03604 -24.96698 -23.75111 -23.15998 -22.89651 -21.17589 -20.36249 -19.19886 -18.86632 -18.00757 -17.05602 -16.90890 -16.51380 -16.21941 -15.84537 -15.51104 -15.07438 -14.91446 -14.49303 -14.32889 -13.92548 -13.60594 -13.36843 -13.00635 -12.98619 -12.82786 -12.57234 -12.33222 -12.27487 -12.21182 -11.91582 -11.75052 -11.68391 -11.42609 -11.37409 -11.12157 -11.08512 -10.81910 -10.77781 -10.64271 -8.30601 -6.31557 1.21515 1.27892 1.31578 1.41758 2.09647 2.30982 2.58023 3.04528 3.21141 3.22987 3.46961 3.78337 3.96268 4.07109 4.14791 4.20412 4.21958 4.32638 4.36856 4.47749 4.56958 4.64336 4.80412 4.83191 4.88270 4.92435 4.99895 5.07828 5.10615 5.18744 5.29312 5.36270 5.37390 5.43115 5.61532 5.63977 5.70345 5.83530 6.27970 6.75328 7.03264 7.31881 8.85451 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.006709 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.036293 B = 4172.396032 C = 4282.409546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 H 0.079 0.921 4 C -0.005 4.005 5 C -0.512 4.512 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.257 1.257 13 C -0.077 4.077 14 C 0.514 3.486 15 O -0.554 6.554 16 O -0.489 6.489 17 C -0.152 4.152 18 C 0.051 3.949 19 O -0.379 6.379 20 C 0.127 3.873 21 H 0.091 0.909 22 C -0.173 4.173 23 C -0.140 4.140 24 C -0.165 4.165 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.017 0.983 29 H 0.000 1.000 30 H 0.265 0.735 31 H 0.417 0.583 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -2.316 18.339 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 H 0.097 0.903 4 C -0.042 4.042 5 C -0.550 4.550 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.754 3.246 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.181 1.181 13 C -0.079 4.079 14 C 0.358 3.642 15 O -0.446 6.446 16 O -0.301 6.301 17 C -0.189 4.189 18 C -0.025 4.025 19 O -0.298 6.298 20 C 0.070 3.930 21 H 0.109 0.891 22 C -0.191 4.191 23 C -0.177 4.177 24 C -0.202 4.202 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.277 0.723 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.794 -2.112 18.375 18.582 hybrid contribution 0.451 -1.420 -1.208 1.918 sum -1.343 -3.532 17.167 17.578 Atomic orbital electron populations 1.21925 0.93351 1.03206 1.01009 1.20967 0.97578 0.98639 0.90244 0.90309 1.19628 0.95963 0.94933 0.93650 1.21326 1.34335 1.08850 0.90471 0.93342 1.25756 0.96778 0.99910 0.95846 1.70026 1.48752 1.41118 0.98647 0.85977 0.79749 0.80692 0.78193 1.19862 1.20617 1.18133 1.22088 0.97218 0.89639 0.98911 1.22819 0.80506 0.91637 0.69219 1.90654 1.56757 1.48916 1.48225 1.84699 1.24677 1.36334 1.84396 1.23340 0.92332 1.01026 1.02247 1.23692 0.92287 0.96947 0.89556 1.88858 1.19388 1.89647 1.31932 1.22304 0.87110 0.96101 0.87534 0.89150 1.22211 0.96128 0.98123 1.02627 1.22967 0.90708 1.03913 1.00125 1.22977 1.03062 1.02109 0.92023 0.93972 0.91022 0.91227 0.96452 0.98150 0.92575 0.72274 0.89945 0.89439 0.86426 0.90624 0.89352 0.88178 0.87179 0.87812 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.30 71.98 0.60 -4.03 16 2 C -0.06 -2.03 1.52 -10.79 -0.02 -2.04 16 3 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 4 C 0.00 -0.21 3.04 29.85 0.09 -0.12 16 5 C -0.51 -28.33 8.96 25.60 0.23 -28.10 16 6 H 0.05 2.89 7.30 -2.91 -0.02 2.87 16 7 C 0.01 0.83 5.47 84.66 0.46 1.30 16 8 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 9 Si 0.93 45.18 27.47 68.60 1.88 47.07 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 13 C -0.08 -2.42 0.39 -51.94 -0.02 -2.44 16 14 C 0.51 16.54 3.98 71.24 0.28 16.83 16 15 O -0.55 -21.01 16.23 21.97 0.36 -20.65 16 16 O -0.49 -12.09 8.12 -51.40 -0.42 -12.51 16 17 C -0.15 -4.68 5.82 31.90 0.19 -4.50 16 18 C 0.05 1.28 7.72 72.67 0.56 1.84 16 19 O -0.38 -10.46 11.18 -148.98 -1.67 -12.13 16 20 C 0.13 3.39 2.70 30.96 0.08 3.48 16 21 H 0.09 2.32 6.42 -2.38 -0.02 2.30 16 22 C -0.17 -4.02 3.58 -10.79 -0.04 -4.06 16 23 C -0.14 -2.58 9.33 30.60 0.29 -2.30 16 24 C -0.16 -3.09 10.25 30.59 0.31 -2.78 16 25 H 0.04 1.63 6.95 -2.39 -0.02 1.62 16 26 H 0.07 2.35 5.53 -2.39 -0.01 2.33 16 27 H 0.07 1.87 5.51 -2.38 -0.01 1.86 16 28 H 0.02 0.81 5.27 -2.39 -0.01 0.80 16 29 H 0.00 0.01 6.86 -2.39 -0.02 -0.01 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.42 6.80 9.10 -74.06 -0.67 6.13 16 32 H 0.08 2.66 6.95 -2.39 -0.02 2.64 16 33 H 0.09 2.90 6.07 -2.39 -0.01 2.88 16 34 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 2.26 6.41 -2.38 -0.02 2.25 16 37 H 0.10 1.82 7.08 -2.39 -0.02 1.81 16 38 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -69.05 305.40 3.81 -65.24 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.33 Total: 17.85 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 3.02 Total: -26.93 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.30 Total: -57.94 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.73 Total: -45.29 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -69.05 3.81 -65.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695783764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.928 kcal (2) G-P(sol) polarization free energy of solvation -69.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds