Wall clock time and date at job start Mon Mar 30 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 103.00170 * 2 1 4 4 C 1.47200 * 109.57362 * 59.84332 * 3 2 1 5 5 N 3.64166 * 80.54729 * 36.26145 * 2 1 3 6 6 C 1.53115 * 109.52267 * 180.02562 * 3 2 1 7 7 C 1.53031 * 109.27932 * 177.56186 * 6 3 2 8 8 N 1.46852 * 109.52233 * 300.81918 * 7 6 3 9 9 C 1.46897 * 110.99930 * 185.83731 * 8 7 6 10 10 H 1.09004 * 109.47223 * 55.00292 * 9 8 7 11 11 C 1.52999 * 109.47615 * 295.00325 * 9 8 7 12 12 C 1.52998 * 109.47123 * 175.00102 * 9 8 7 13 13 C 1.50706 * 109.47348 * 295.00166 * 12 9 8 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 9 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 9 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.46848 * 111.19504 * 61.74427 * 8 7 6 22 22 C 1.53037 * 109.52084 * 298.25374 * 21 8 7 23 23 H 1.08995 * 109.47386 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46849 * 300.00147 * 1 2 3 25 25 H 1.09000 * 109.47074 * 59.99422 * 1 2 3 26 26 H 1.09000 * 109.50378 * 57.62160 * 6 3 2 27 27 H 1.09003 * 109.50332 * 297.50679 * 6 3 2 28 28 H 1.09002 * 109.46161 * 180.80560 * 7 6 3 29 29 H 1.09002 * 109.46658 * 60.83615 * 7 6 3 30 30 H 1.08995 * 109.47105 * 59.99478 * 11 9 8 31 31 H 1.08998 * 109.47635 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.46798 * 300.00228 * 11 9 8 33 33 H 1.09001 * 109.47671 * 175.00375 * 12 9 8 34 34 H 1.08998 * 109.47454 * 55.00372 * 12 9 8 35 35 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 36 36 H 1.08993 * 109.46779 * 58.27421 * 21 8 7 37 37 H 1.09007 * 109.45815 * 178.24365 * 21 8 7 38 38 H 1.08995 * 109.50656 * 299.24155 * 22 21 8 39 39 H 1.09004 * 109.49856 * 179.12274 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6542 2.4048 1.1992 5 7 1.2159 2.8965 2.1247 6 6 3.7434 1.9414 -0.0006 7 6 4.0815 3.4326 -0.0621 8 7 3.5035 4.0171 -1.2790 9 6 3.9236 5.4152 -1.4423 10 1 5.0121 5.4720 -1.4251 11 6 3.3510 6.2567 -0.2999 12 6 3.4062 5.9505 -2.7789 13 6 4.0649 5.2017 -3.9088 14 1 4.7812 4.4223 -3.6948 15 6 3.7492 5.5080 -5.2155 16 7 2.8728 6.4534 -5.4759 17 14 4.5651 4.5794 -6.6160 18 1 4.2502 3.1328 -6.5005 19 1 4.0576 5.0940 -7.9132 20 1 6.0359 4.7729 -6.5475 21 6 2.0394 3.9042 -1.2786 22 6 1.6404 2.4270 -1.2535 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.1671 1.4362 -0.8686 27 1 4.1592 1.5112 0.9105 28 1 5.1640 3.5593 -0.0771 29 1 3.6693 3.9349 0.8131 30 1 3.7196 5.8754 0.6523 31 1 3.6624 7.2942 -0.4213 32 1 2.2626 6.1999 -0.3172 33 1 3.6410 7.0117 -2.8609 34 1 2.3263 5.8122 -2.8322 35 1 2.6503 6.6688 -6.3952 36 1 1.6368 4.4042 -0.3977 37 1 1.6387 4.3734 -2.1772 38 1 2.0309 1.9294 -2.1411 39 1 0.5536 2.3439 -1.2374 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:12 Heat of formation + Delta-G solvation = 25.538125 kcal Electronic energy + Delta-G solvation = -19127.760975 eV Core-core repulsion = 16389.491672 eV Total energy + Delta-G solvation = -2738.269303 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62215 -36.70608 -34.69933 -32.55380 -31.08436 -29.94608 -29.00242 -27.34393 -24.94460 -23.35733 -22.88999 -21.28573 -19.08669 -17.49492 -16.34701 -16.13336 -15.43686 -14.89166 -14.77481 -14.54523 -14.05448 -13.85939 -13.76605 -13.56410 -13.11387 -13.08462 -12.60800 -12.39001 -12.21759 -11.89878 -11.82885 -11.61220 -11.46663 -11.22370 -11.01427 -10.67013 -10.61738 -10.57725 -10.39525 -9.93543 -9.92041 -9.18747 -9.01630 -8.27978 -7.97918 -7.59040 -5.91142 -3.89562 1.16839 2.07497 2.62213 2.95328 3.39966 3.44211 3.47368 3.60912 4.39436 4.51669 4.54853 4.62783 4.90908 4.94207 5.23439 5.37980 5.45206 5.45676 5.49028 5.62715 5.68890 5.71251 5.74928 5.90362 5.94130 6.07085 6.11559 6.30168 6.35532 6.53804 6.66798 6.91352 7.37402 7.46010 7.60164 7.82346 7.93651 8.09453 8.53979 9.16563 9.72701 11.20636 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.005878 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.132162 B = 4762.585147 C = 5437.482003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.208 6.208 3 C 0.067 3.933 4 C 0.215 3.785 5 N -0.421 5.421 6 C -0.087 4.087 7 C 0.052 3.948 8 N -0.505 5.505 9 C 0.088 3.912 10 H 0.074 0.926 11 C -0.185 4.185 12 C 0.028 3.972 13 C -0.492 4.492 14 H 0.062 0.938 15 C 0.052 3.948 16 N -0.904 5.904 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.053 3.947 22 C -0.103 4.103 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.258 0.742 36 H 0.023 0.977 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 -10.700 10.200 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.022 5.978 3 C -0.046 4.046 4 C -0.105 4.105 5 N -0.097 5.097 6 C -0.127 4.127 7 C -0.078 4.078 8 N -0.229 5.229 9 C -0.020 4.020 10 H 0.092 0.908 11 C -0.244 4.244 12 C -0.009 4.009 13 C -0.531 4.531 14 H 0.080 0.920 15 C -0.148 4.148 16 N -0.545 5.545 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.076 4.076 22 C -0.143 4.143 23 H 0.124 0.876 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.115 -11.093 11.055 15.803 hybrid contribution -0.710 0.830 -0.387 1.158 sum -2.825 -10.263 10.668 15.070 Atomic orbital electron populations 1.23533 0.94343 1.06804 1.05513 1.86945 1.07272 1.06141 1.97472 1.20529 1.00488 0.93466 0.90106 1.28884 0.93857 0.93435 0.94284 1.81181 1.08642 1.08846 1.11060 1.21553 0.88276 0.98433 1.04455 1.22143 1.00701 0.92667 0.92334 1.62095 1.07734 1.19144 1.33920 1.21929 0.99403 0.84317 0.96349 0.90811 1.22533 1.01281 1.01416 0.99186 1.19241 0.96563 0.95831 0.89220 1.21130 1.23601 1.18237 0.90085 0.91987 1.25003 0.95500 0.95404 0.98893 1.69953 1.33820 1.31315 1.19385 0.86697 0.79688 0.80293 0.81508 1.20257 1.21751 1.20498 1.22180 0.89496 0.93915 1.02048 1.22052 0.99919 0.97348 0.94973 0.87578 0.90743 0.89474 0.87736 0.90427 0.89773 0.95505 0.94176 0.92364 0.93117 0.96284 0.96211 0.93245 0.95861 0.87719 0.87262 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 10.01 101.05 1.01 -0.17 16 2 S -0.21 -2.29 21.28 -107.50 -2.29 -4.58 16 3 C 0.07 0.83 0.66 -93.29 -0.06 0.77 16 4 C 0.22 3.02 10.94 -20.76 -0.23 2.79 16 5 N -0.42 -6.67 18.54 42.15 0.78 -5.89 16 6 C -0.09 -1.05 4.87 -26.66 -0.13 -1.18 16 7 C 0.05 0.73 4.82 -3.83 -0.02 0.71 16 8 N -0.51 -8.67 4.36 -226.69 -0.99 -9.66 16 9 C 0.09 1.68 2.30 -67.72 -0.16 1.52 16 10 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 11 C -0.19 -3.16 8.50 37.16 0.32 -2.84 16 12 C 0.03 0.68 4.27 -27.88 -0.12 0.56 16 13 C -0.49 -13.05 8.84 -34.44 -0.30 -13.35 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 16 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.05 0.87 4.43 -3.83 -0.02 0.86 16 22 C -0.10 -1.37 4.66 -26.65 -0.12 -1.49 16 23 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.70 7.82 -51.92 -0.41 0.30 16 25 H 0.09 0.72 7.07 -51.92 -0.37 0.36 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 29 H 0.03 0.40 5.90 -51.93 -0.31 0.09 16 30 H 0.04 0.62 6.65 -51.93 -0.35 0.28 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.88 6.52 -51.93 -0.34 0.54 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 6.05 -51.93 -0.31 0.19 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.02 0.39 5.79 -51.93 -0.30 0.09 16 37 H 0.10 1.99 5.93 -51.92 -0.31 1.68 16 38 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 0.82 6.83 -51.93 -0.35 0.46 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -29.22 317.69 -7.88 -37.09 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.96 Total: -1.86 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.53 Total: -41.19 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.29 Total: -4.58 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.22 -7.88 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.629 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds