Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 103.00170 * 2 1 4 4 C 1.47200 * 109.57362 * 59.84332 * 3 2 1 5 5 N 3.64166 * 80.54729 * 36.26145 * 2 1 3 6 6 C 1.53115 * 109.52267 * 180.02562 * 3 2 1 7 7 C 1.53031 * 109.27932 * 177.56186 * 6 3 2 8 8 N 1.46852 * 109.52233 * 300.81918 * 7 6 3 9 9 C 1.46897 * 110.99930 * 185.83731 * 8 7 6 10 10 H 1.09004 * 109.47223 * 55.00292 * 9 8 7 11 11 C 1.52999 * 109.47615 * 295.00325 * 9 8 7 12 12 C 1.52998 * 109.47123 * 175.00102 * 9 8 7 13 13 C 1.50706 * 109.47348 * 295.00166 * 12 9 8 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 9 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 9 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.46848 * 111.19504 * 61.74427 * 8 7 6 22 22 C 1.53037 * 109.52084 * 298.25374 * 21 8 7 23 23 H 1.08995 * 109.47386 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46849 * 300.00147 * 1 2 3 25 25 H 1.09000 * 109.47074 * 59.99422 * 1 2 3 26 26 H 1.09000 * 109.50378 * 57.62160 * 6 3 2 27 27 H 1.09003 * 109.50332 * 297.50679 * 6 3 2 28 28 H 1.09002 * 109.46161 * 180.80560 * 7 6 3 29 29 H 1.09002 * 109.46658 * 60.83615 * 7 6 3 30 30 H 1.08995 * 109.47105 * 59.99478 * 11 9 8 31 31 H 1.08998 * 109.47635 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.46798 * 300.00228 * 11 9 8 33 33 H 1.09001 * 109.47671 * 175.00375 * 12 9 8 34 34 H 1.08998 * 109.47454 * 55.00372 * 12 9 8 35 35 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 36 36 H 1.08993 * 109.46779 * 58.27421 * 21 8 7 37 37 H 1.09007 * 109.45815 * 178.24365 * 21 8 7 38 38 H 1.08995 * 109.50656 * 299.24155 * 22 21 8 39 39 H 1.09004 * 109.49856 * 179.12274 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6542 2.4048 1.1992 5 7 1.2159 2.8965 2.1247 6 6 3.7434 1.9414 -0.0006 7 6 4.0815 3.4326 -0.0621 8 7 3.5035 4.0171 -1.2790 9 6 3.9236 5.4152 -1.4423 10 1 5.0121 5.4720 -1.4251 11 6 3.3510 6.2567 -0.2999 12 6 3.4062 5.9505 -2.7789 13 6 4.0649 5.2017 -3.9088 14 1 4.7812 4.4223 -3.6948 15 6 3.7492 5.5080 -5.2155 16 7 2.8728 6.4534 -5.4759 17 14 4.5651 4.5794 -6.6160 18 1 4.2502 3.1328 -6.5005 19 1 4.0576 5.0940 -7.9132 20 1 6.0359 4.7729 -6.5475 21 6 2.0394 3.9042 -1.2786 22 6 1.6404 2.4270 -1.2535 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.1671 1.4362 -0.8686 27 1 4.1592 1.5112 0.9105 28 1 5.1640 3.5593 -0.0771 29 1 3.6693 3.9349 0.8131 30 1 3.7196 5.8754 0.6523 31 1 3.6624 7.2942 -0.4213 32 1 2.2626 6.1999 -0.3172 33 1 3.6410 7.0117 -2.8609 34 1 2.3263 5.8122 -2.8322 35 1 2.6503 6.6688 -6.3952 36 1 1.6368 4.4042 -0.3977 37 1 1.6387 4.3734 -2.1772 38 1 2.0309 1.9294 -2.1411 39 1 0.5536 2.3439 -1.2374 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = 8.542642 kcal Electronic energy + Delta-G solvation = -19128.497955 eV Core-core repulsion = 16389.491672 eV Total energy + Delta-G solvation = -2739.006283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85243 -37.99317 -36.05069 -34.48528 -32.24536 -31.39581 -29.77354 -29.12995 -26.21156 -25.03282 -24.23292 -22.55912 -20.57477 -18.51877 -18.26426 -17.45860 -16.69180 -16.47952 -16.00686 -15.78292 -15.36817 -15.03083 -14.78644 -14.58711 -14.50480 -14.05103 -13.95758 -13.82787 -13.52879 -13.43834 -13.11916 -12.94157 -12.90037 -12.58867 -12.46580 -12.34753 -12.15265 -11.92727 -11.82571 -11.44116 -11.10757 -11.05050 -10.78573 -10.40045 -8.99123 -8.80327 -8.03327 -6.07936 0.24524 1.24774 1.49729 1.51481 1.52240 1.58645 1.87211 2.53964 2.55221 3.07466 3.33391 3.48720 3.58067 4.08735 4.17525 4.23112 4.25253 4.29909 4.31409 4.41461 4.51651 4.54098 4.61550 4.68923 4.84197 4.90095 4.91985 5.10113 5.11919 5.13470 5.18964 5.29224 5.55154 5.74567 5.95739 6.28152 6.31965 6.41034 6.52710 7.06321 7.58390 9.08542 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.005878 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.132162 B = 4762.585147 C = 5437.482003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.202 6.202 3 C 0.068 3.932 4 C 0.231 3.769 5 N -0.454 5.454 6 C -0.083 4.083 7 C 0.053 3.947 8 N -0.516 5.516 9 C 0.096 3.904 10 H 0.074 0.926 11 C -0.175 4.175 12 C 0.034 3.966 13 C -0.495 4.495 14 H 0.065 0.935 15 C -0.004 4.004 16 N -0.943 5.943 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.294 1.294 20 H -0.272 1.272 21 C 0.059 3.941 22 C -0.096 4.096 23 H 0.127 0.873 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.022 0.978 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.042 0.958 33 H -0.011 1.011 34 H 0.000 1.000 35 H 0.257 0.743 36 H 0.019 0.981 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -12.980 10.728 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.028 5.972 3 C -0.045 4.045 4 C -0.089 4.089 5 N -0.131 5.131 6 C -0.123 4.123 7 C -0.077 4.077 8 N -0.240 5.240 9 C -0.012 4.012 10 H 0.092 0.908 11 C -0.234 4.234 12 C -0.003 4.003 13 C -0.533 4.533 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.585 5.585 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.220 1.220 20 H -0.197 1.197 21 C -0.071 4.071 22 C -0.136 4.136 23 H 0.146 0.854 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.018 0.982 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.446 -13.388 11.600 17.773 hybrid contribution -0.957 1.524 -0.530 1.876 sum -2.403 -11.864 11.070 16.404 Atomic orbital electron populations 1.23653 0.92614 1.08293 1.05613 1.86975 1.09174 1.03695 1.97380 1.20509 1.00640 0.94748 0.88607 1.29161 0.93029 0.92591 0.94108 1.81198 1.09722 1.09957 1.12251 1.21566 0.88052 0.96842 1.05835 1.22213 1.01124 0.93857 0.90471 1.62023 1.08195 1.17697 1.36102 1.21626 0.99160 0.86060 0.94364 0.90780 1.22401 1.00624 1.01157 0.99213 1.19092 0.95332 0.94065 0.91781 1.21460 1.23089 1.17909 0.90835 0.91676 1.25826 0.96170 0.96315 1.01656 1.70097 1.35558 1.33118 1.19719 0.85659 0.78852 0.79333 0.78109 1.19130 1.21997 1.19704 1.22042 0.89073 0.95920 1.00077 1.21983 1.00975 0.95046 0.95620 0.85429 0.91232 0.88781 0.87112 0.88321 0.88653 0.95941 0.92220 0.92347 0.93940 0.99303 0.98213 0.93452 0.96325 0.91153 0.87292 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 10.01 113.37 1.14 -0.87 16 2 S -0.20 -3.89 21.28 -56.49 -1.20 -5.09 16 3 C 0.07 1.53 0.66 -12.52 -0.01 1.52 16 4 C 0.23 6.07 10.94 89.44 0.98 7.05 16 5 N -0.45 -13.84 18.54 20.00 0.37 -13.47 16 6 C -0.08 -1.79 4.87 30.64 0.15 -1.64 16 7 C 0.05 1.39 4.82 86.32 0.42 1.80 16 8 N -0.52 -17.38 4.36 -871.11 -3.80 -21.17 16 9 C 0.10 3.69 2.30 44.92 0.10 3.79 16 10 H 0.07 2.83 8.08 -2.38 -0.02 2.81 16 11 C -0.18 -5.93 8.50 71.98 0.61 -5.32 16 12 C 0.03 1.71 4.27 29.85 0.13 1.83 16 13 C -0.49 -26.49 8.84 25.60 0.23 -26.27 16 14 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 16 N -0.94 -56.32 13.29 21.45 0.28 -56.03 16 17 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.06 1.92 4.43 86.33 0.38 2.30 16 22 C -0.10 -2.43 4.66 30.65 0.14 -2.28 16 23 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.15 7.82 -2.39 -0.02 1.13 16 25 H 0.09 1.31 7.07 -2.39 -0.02 1.29 16 26 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.10 2.30 8.08 -2.39 -0.02 2.29 16 29 H 0.02 0.62 5.90 -2.39 -0.01 0.61 16 30 H 0.06 1.78 6.65 -2.39 -0.02 1.77 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.49 6.52 -2.38 -0.02 1.47 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.00 -0.02 6.05 -2.39 -0.01 -0.03 16 35 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.02 0.62 5.79 -2.39 -0.01 0.61 16 37 H 0.07 2.79 5.93 -2.38 -0.01 2.77 16 38 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.08 1.86 6.83 -2.38 -0.02 1.84 16 Total: -1.00 -63.06 317.69 3.44 -59.62 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.03 Total: 8.33 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 4.73 Total: -17.82 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -3.14 Total: -90.68 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -1.20 Total: -5.09 kcal Total: -63.06 3.44 -59.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.164 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds