Wall clock time and date at job start Mon Mar 30 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81397 * 103.00343 * 2 1 4 4 C 1.47208 * 109.57353 * 59.84067 * 3 2 1 5 5 N 3.64171 * 80.54770 * 36.26199 * 2 1 3 6 6 C 1.53118 * 109.52711 * 180.02562 * 3 2 1 7 7 C 1.53035 * 109.28001 * 177.55889 * 6 3 2 8 8 N 1.46842 * 109.52486 * 300.82365 * 7 6 3 9 9 C 1.46906 * 111.00032 * 185.83661 * 8 7 6 10 10 H 1.08992 * 109.47251 * 188.74520 * 9 8 7 11 11 C 1.53005 * 109.47162 * 308.74765 * 9 8 7 12 12 C 1.53000 * 109.46787 * 68.74361 * 9 8 7 13 13 C 1.50701 * 109.47017 * 63.57809 * 12 9 8 14 14 H 1.07995 * 119.99861 * 5.07998 * 13 12 9 15 15 C 1.37871 * 120.00180 * 185.08667 * 13 12 9 16 16 N 1.31518 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00303 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47289 * 59.99410 * 17 15 13 19 19 H 1.48509 * 109.47393 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46927 * 299.99419 * 17 15 13 21 21 C 1.46854 * 111.19969 * 61.74301 * 8 7 6 22 22 C 1.53034 * 109.51790 * 298.25579 * 21 8 7 23 23 H 1.08997 * 109.47120 * 59.99542 * 1 2 3 24 24 H 1.08992 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46843 * 299.99887 * 1 2 3 26 26 H 1.09003 * 109.49598 * 57.61966 * 6 3 2 27 27 H 1.09000 * 109.50015 * 297.50618 * 6 3 2 28 28 H 1.08997 * 109.46181 * 180.80492 * 7 6 3 29 29 H 1.09006 * 109.44856 * 60.83482 * 7 6 3 30 30 H 1.09001 * 109.47012 * 180.02562 * 11 9 8 31 31 H 1.09005 * 109.47006 * 59.99557 * 11 9 8 32 32 H 1.08994 * 109.46714 * 299.99701 * 11 9 8 33 33 H 1.08998 * 109.47106 * 183.56928 * 12 9 8 34 34 H 1.09000 * 109.47326 * 303.57735 * 12 9 8 35 35 H 0.97001 * 119.99818 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.46185 * 58.27107 * 21 8 7 37 37 H 1.08994 * 109.45924 * 178.24281 * 21 8 7 38 38 H 1.08993 * 109.50762 * 299.23512 * 22 21 8 39 39 H 1.09005 * 109.50175 * 179.11756 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6541 2.4048 1.1993 5 7 1.2159 2.8965 2.1247 6 6 3.7434 1.9414 -0.0006 7 6 4.0814 3.4327 -0.0622 8 7 3.5035 4.0171 -1.2790 9 6 3.9235 5.4153 -1.4423 10 1 3.3632 5.8700 -2.2591 11 6 3.6520 6.1840 -0.1475 12 6 5.4193 5.4645 -1.7605 13 6 5.6748 4.7832 -3.0802 14 1 4.8454 4.4305 -3.6752 15 6 6.9673 4.6100 -3.5278 16 7 7.9772 5.0399 -2.8033 17 14 7.2840 3.7649 -5.1632 18 1 6.6269 4.5316 -6.2521 19 1 8.7465 3.7041 -5.4141 20 1 6.7305 2.3875 -5.1240 21 6 2.0393 3.9043 -1.2786 22 6 1.6404 2.4270 -1.2534 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.1670 1.4361 -0.8686 27 1 4.1592 1.5112 0.9105 28 1 5.1639 3.5594 -0.0772 29 1 3.6691 3.9347 0.8132 30 1 3.9633 7.2216 -0.2688 31 1 4.2125 5.7292 0.6694 32 1 2.5865 6.1489 0.0792 33 1 5.7443 6.5033 -1.8190 34 1 5.9750 4.9536 -0.9742 35 1 8.8865 4.9183 -3.1184 36 1 1.6368 4.4042 -0.3976 37 1 1.6387 4.3734 -2.1771 38 1 2.0308 1.9294 -2.1411 39 1 0.5536 2.3438 -1.2373 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:15 Heat of formation + Delta-G solvation = 25.268191 kcal Electronic energy + Delta-G solvation = -19102.181368 eV Core-core repulsion = 16363.900360 eV Total energy + Delta-G solvation = -2738.281009 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61579 -36.70279 -34.70413 -32.52475 -31.04162 -30.09540 -28.95155 -27.32261 -24.96155 -23.28865 -22.95801 -21.27229 -19.09334 -17.50451 -16.34717 -16.13574 -15.46754 -14.92186 -14.61955 -14.61124 -14.13261 -13.84375 -13.79802 -13.56858 -13.11773 -13.03523 -12.61062 -12.35592 -12.20778 -12.07340 -11.78447 -11.61816 -11.42668 -11.18294 -10.97627 -10.81374 -10.59741 -10.43660 -10.38316 -10.06685 -9.87779 -9.20102 -8.99345 -8.25594 -7.99639 -7.57141 -5.88492 -3.86441 1.15472 2.06282 2.61165 2.94306 3.41396 3.45741 3.48670 3.60140 4.38290 4.50405 4.56816 4.62108 4.86429 4.89426 5.22456 5.35386 5.43022 5.46767 5.48868 5.57770 5.67466 5.71113 5.78658 5.89670 5.93822 6.05959 6.10940 6.28315 6.36034 6.51157 6.64261 6.94389 7.36494 7.46845 7.59682 7.83715 7.95790 8.11339 8.56433 9.18452 9.75203 11.23396 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.005785 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.635604 B = 4839.203647 C = 5540.769037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.204 6.204 3 C 0.067 3.933 4 C 0.215 3.785 5 N -0.421 5.421 6 C -0.089 4.089 7 C 0.057 3.943 8 N -0.504 5.504 9 C 0.088 3.912 10 H 0.071 0.929 11 C -0.184 4.184 12 C 0.031 3.969 13 C -0.489 4.489 14 H 0.060 0.940 15 C 0.052 3.948 16 N -0.904 5.904 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.277 1.277 21 C 0.051 3.949 22 C -0.102 4.102 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.015 0.985 34 H 0.023 0.977 35 H 0.258 0.742 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.386 -7.654 4.431 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.026 5.974 3 C -0.046 4.046 4 C -0.105 4.105 5 N -0.097 5.097 6 C -0.129 4.129 7 C -0.072 4.072 8 N -0.227 5.227 9 C -0.020 4.020 10 H 0.089 0.911 11 C -0.243 4.243 12 C -0.007 4.007 13 C -0.527 4.527 14 H 0.078 0.922 15 C -0.148 4.148 16 N -0.545 5.545 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.079 4.079 22 C -0.142 4.142 23 H 0.103 0.897 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.025 -8.127 5.430 16.284 hybrid contribution -0.787 0.805 -0.419 1.202 sum -13.812 -7.321 5.011 16.416 Atomic orbital electron populations 1.23528 0.94718 1.06780 1.05310 1.87086 1.06771 1.06106 1.97431 1.20535 1.00919 0.93376 0.89758 1.28892 0.93765 0.93441 0.94359 1.81181 1.08859 1.08873 1.10827 1.21608 0.87553 0.98945 1.04791 1.22144 1.02357 0.91757 0.90971 1.62094 1.05498 1.19138 1.35991 1.21932 1.01088 0.84589 0.94362 0.91090 1.22534 0.99645 1.01614 1.00547 1.19190 0.87188 0.96860 0.97413 1.21079 0.91719 1.36162 1.03777 0.92224 1.24983 0.96474 0.96198 0.97099 1.69952 0.98618 1.47881 1.38033 0.86710 0.76662 0.80279 0.84590 1.20595 1.21745 1.20254 1.22140 0.90703 0.94301 1.00765 1.22016 0.99699 0.97000 0.95483 0.89690 0.87593 0.90781 0.87494 0.90321 0.88030 0.95621 0.92384 0.92807 0.94421 0.96651 0.95915 0.93270 0.95807 0.89940 0.87374 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 10.01 101.05 1.01 -0.10 16 2 S -0.20 -2.25 21.28 -107.50 -2.29 -4.54 16 3 C 0.07 0.83 0.66 -93.28 -0.06 0.77 16 4 C 0.22 3.00 10.94 -20.76 -0.23 2.78 16 5 N -0.42 -6.63 18.54 42.15 0.78 -5.84 16 6 C -0.09 -1.22 4.87 -26.65 -0.13 -1.35 16 7 C 0.06 0.94 4.26 -3.84 -0.02 0.92 16 8 N -0.50 -8.68 4.26 -226.69 -0.97 -9.65 16 9 C 0.09 1.69 2.26 -67.71 -0.15 1.53 16 10 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 11 C -0.18 -3.13 8.40 37.16 0.31 -2.82 16 12 C 0.03 0.74 4.40 -27.88 -0.12 0.61 16 13 C -0.49 -13.02 8.80 -34.44 -0.30 -13.32 16 14 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 15 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 16 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C 0.05 0.72 4.97 -3.83 -0.02 0.70 16 22 C -0.10 -1.19 4.66 -26.65 -0.12 -1.32 16 23 H 0.08 0.61 7.07 -51.93 -0.37 0.25 16 24 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.66 7.81 -51.92 -0.41 0.25 16 26 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.89 6.28 -51.93 -0.33 1.56 16 29 H 0.03 0.42 5.74 -51.93 -0.30 0.12 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.92 6.45 -51.93 -0.33 0.59 16 32 H 0.04 0.59 6.93 -51.93 -0.36 0.23 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.58 6.39 -51.93 -0.33 0.25 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.02 0.35 6.15 -51.93 -0.32 0.03 16 37 H 0.08 1.11 7.98 -51.93 -0.41 0.70 16 38 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 0.67 6.83 -51.93 -0.35 0.31 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -29.41 318.38 -7.89 -37.30 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -6.00 Total: -2.40 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.55 Total: -41.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.29 Total: -4.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.41 -7.89 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.565 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds