Wall clock time and date at job start Mon Mar 30 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81397 * 103.00343 * 2 1 4 4 C 1.47208 * 109.57353 * 59.84067 * 3 2 1 5 5 N 3.64171 * 80.54770 * 36.26199 * 2 1 3 6 6 C 1.53118 * 109.52711 * 180.02562 * 3 2 1 7 7 C 1.53035 * 109.28001 * 177.55889 * 6 3 2 8 8 N 1.46842 * 109.52486 * 300.82365 * 7 6 3 9 9 C 1.46906 * 111.00032 * 185.83661 * 8 7 6 10 10 H 1.08992 * 109.47251 * 188.74520 * 9 8 7 11 11 C 1.53005 * 109.47162 * 308.74765 * 9 8 7 12 12 C 1.53000 * 109.46787 * 68.74361 * 9 8 7 13 13 C 1.50701 * 109.47017 * 63.57809 * 12 9 8 14 14 H 1.07995 * 119.99861 * 5.07998 * 13 12 9 15 15 C 1.37871 * 120.00180 * 185.08667 * 13 12 9 16 16 N 1.31518 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00303 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47289 * 59.99410 * 17 15 13 19 19 H 1.48509 * 109.47393 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46927 * 299.99419 * 17 15 13 21 21 C 1.46854 * 111.19969 * 61.74301 * 8 7 6 22 22 C 1.53034 * 109.51790 * 298.25579 * 21 8 7 23 23 H 1.08997 * 109.47120 * 59.99542 * 1 2 3 24 24 H 1.08992 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46843 * 299.99887 * 1 2 3 26 26 H 1.09003 * 109.49598 * 57.61966 * 6 3 2 27 27 H 1.09000 * 109.50015 * 297.50618 * 6 3 2 28 28 H 1.08997 * 109.46181 * 180.80492 * 7 6 3 29 29 H 1.09006 * 109.44856 * 60.83482 * 7 6 3 30 30 H 1.09001 * 109.47012 * 180.02562 * 11 9 8 31 31 H 1.09005 * 109.47006 * 59.99557 * 11 9 8 32 32 H 1.08994 * 109.46714 * 299.99701 * 11 9 8 33 33 H 1.08998 * 109.47106 * 183.56928 * 12 9 8 34 34 H 1.09000 * 109.47326 * 303.57735 * 12 9 8 35 35 H 0.97001 * 119.99818 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.46185 * 58.27107 * 21 8 7 37 37 H 1.08994 * 109.45924 * 178.24281 * 21 8 7 38 38 H 1.08993 * 109.50762 * 299.23512 * 22 21 8 39 39 H 1.09005 * 109.50175 * 179.11756 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6541 2.4048 1.1993 5 7 1.2159 2.8965 2.1247 6 6 3.7434 1.9414 -0.0006 7 6 4.0814 3.4327 -0.0622 8 7 3.5035 4.0171 -1.2790 9 6 3.9235 5.4153 -1.4423 10 1 3.3632 5.8700 -2.2591 11 6 3.6520 6.1840 -0.1475 12 6 5.4193 5.4645 -1.7605 13 6 5.6748 4.7832 -3.0802 14 1 4.8454 4.4305 -3.6752 15 6 6.9673 4.6100 -3.5278 16 7 7.9772 5.0399 -2.8033 17 14 7.2840 3.7649 -5.1632 18 1 6.6269 4.5316 -6.2521 19 1 8.7465 3.7041 -5.4141 20 1 6.7305 2.3875 -5.1240 21 6 2.0393 3.9043 -1.2786 22 6 1.6404 2.4270 -1.2534 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.1670 1.4361 -0.8686 27 1 4.1592 1.5112 0.9105 28 1 5.1639 3.5594 -0.0772 29 1 3.6691 3.9347 0.8132 30 1 3.9633 7.2216 -0.2688 31 1 4.2125 5.7292 0.6694 32 1 2.5865 6.1489 0.0792 33 1 5.7443 6.5033 -1.8190 34 1 5.9750 4.9536 -0.9742 35 1 8.8865 4.9183 -3.1184 36 1 1.6368 4.4042 -0.3976 37 1 1.6387 4.3734 -2.1771 38 1 2.0308 1.9294 -2.1411 39 1 0.5536 2.3438 -1.2373 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:15 Heat of formation + Delta-G solvation = 8.129572 kcal Electronic energy + Delta-G solvation = -19102.924554 eV Core-core repulsion = 16363.900360 eV Total energy + Delta-G solvation = -2739.024195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84006 -37.98450 -36.05246 -34.46950 -32.17215 -31.53447 -29.67451 -29.13444 -26.22622 -24.98005 -24.28196 -22.54512 -20.58497 -18.50740 -18.26260 -17.47522 -16.71044 -16.46261 -16.03573 -15.58670 -15.51835 -15.03052 -14.76614 -14.60997 -14.44981 -14.06596 -13.88222 -13.72106 -13.59846 -13.39568 -13.21907 -13.04719 -12.80692 -12.57006 -12.40574 -12.36727 -12.17411 -11.93596 -11.72415 -11.61221 -11.05432 -10.98323 -10.82951 -10.39180 -8.97648 -8.80615 -8.01575 -6.05731 0.23865 1.27246 1.50125 1.51822 1.52154 1.59095 1.87508 2.54889 2.55347 3.07086 3.35235 3.48238 3.57874 4.08431 4.17691 4.24014 4.26447 4.29098 4.33415 4.41450 4.51522 4.55296 4.62244 4.66061 4.84892 4.87629 4.93132 5.07697 5.11567 5.14325 5.19654 5.30267 5.55646 5.74483 5.96504 6.27813 6.32216 6.42474 6.53967 7.07707 7.60003 9.10385 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.005785 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.635604 B = 4839.203647 C = 5540.769037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.213 6.213 3 C 0.070 3.930 4 C 0.231 3.769 5 N -0.453 5.453 6 C -0.084 4.084 7 C 0.063 3.937 8 N -0.517 5.517 9 C 0.097 3.903 10 H 0.073 0.927 11 C -0.174 4.174 12 C 0.036 3.964 13 C -0.491 4.491 14 H 0.063 0.937 15 C -0.004 4.004 16 N -0.943 5.943 17 Si 0.954 3.046 18 H -0.272 1.272 19 H -0.294 1.294 20 H -0.267 1.267 21 C 0.052 3.948 22 C -0.096 4.096 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.055 0.945 33 H -0.013 1.013 34 H -0.001 1.001 35 H 0.256 0.744 36 H 0.021 0.979 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 -9.164 3.494 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.017 5.983 3 C -0.043 4.043 4 C -0.089 4.089 5 N -0.130 5.130 6 C -0.124 4.124 7 C -0.067 4.067 8 N -0.241 5.241 9 C -0.012 4.012 10 H 0.091 0.909 11 C -0.233 4.233 12 C -0.001 4.001 13 C -0.530 4.530 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.585 5.585 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.220 1.220 20 H -0.192 1.192 21 C -0.078 4.078 22 C -0.136 4.136 23 H 0.120 0.880 24 H 0.144 0.856 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.006 0.994 34 H 0.017 0.983 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.254 -9.640 4.492 18.596 hybrid contribution -0.130 1.255 -0.096 1.266 sum -15.385 -8.385 4.396 18.064 Atomic orbital electron populations 1.23650 0.91945 1.08308 1.05868 1.87193 1.09761 1.03970 1.97413 1.20479 0.99631 0.94808 0.89391 1.29152 0.92966 0.92602 0.94167 1.81199 1.10003 1.10023 1.11814 1.21502 0.89041 0.96755 1.05110 1.22001 1.00329 0.93714 0.90625 1.61998 1.07883 1.17664 1.36538 1.21623 0.97522 0.86533 0.95473 0.90885 1.22399 1.00626 1.01190 0.99107 1.19044 0.90657 0.94437 0.95970 1.21420 0.91750 1.35361 1.04457 0.91831 1.25810 0.96439 0.97100 1.00611 1.70098 0.98905 1.49577 1.39940 0.85669 0.76267 0.79591 0.80465 1.19700 1.22030 1.19180 1.22219 0.88213 0.96279 1.01087 1.22037 1.01434 0.95002 0.95119 0.88045 0.85603 0.91253 0.87789 0.89515 0.91297 0.95844 0.92276 0.93548 0.92596 0.99435 0.98283 0.93502 0.96091 0.88948 0.86925 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 10.01 113.37 1.14 -0.54 16 2 S -0.21 -4.14 21.28 -56.49 -1.20 -5.35 16 3 C 0.07 1.58 0.66 -12.52 -0.01 1.57 16 4 C 0.23 6.03 10.94 89.44 0.98 7.00 16 5 N -0.45 -13.66 18.54 20.01 0.37 -13.29 16 6 C -0.08 -2.24 4.87 30.65 0.15 -2.09 16 7 C 0.06 2.07 4.26 86.33 0.37 2.44 16 8 N -0.52 -17.50 4.26 -871.12 -3.71 -21.21 16 9 C 0.10 3.71 2.26 44.92 0.10 3.81 16 10 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 11 C -0.17 -5.89 8.40 71.98 0.60 -5.28 16 12 C 0.04 1.80 4.40 29.85 0.13 1.93 16 13 C -0.49 -26.43 8.80 25.60 0.23 -26.21 16 14 H 0.06 3.31 7.75 -2.91 -0.02 3.29 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 16 N -0.94 -56.63 13.29 21.45 0.28 -56.34 16 17 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.05 1.34 4.97 86.32 0.43 1.77 16 22 C -0.10 -1.97 4.66 30.65 0.14 -1.83 16 23 H 0.10 1.02 7.07 -2.39 -0.02 1.00 16 24 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.01 7.81 -2.39 -0.02 0.99 16 26 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.70 6.28 -2.39 -0.02 2.69 16 29 H 0.02 0.77 5.74 -2.38 -0.01 0.76 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.62 6.45 -2.38 -0.02 1.60 16 32 H 0.06 1.68 6.93 -2.39 -0.02 1.66 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.00 -0.06 6.39 -2.39 -0.02 -0.08 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.02 0.57 6.15 -2.39 -0.01 0.55 16 37 H 0.09 2.24 7.98 -2.39 -0.02 2.22 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.10 1.48 6.83 -2.38 -0.02 1.47 16 Total: -1.00 -63.77 318.38 3.52 -60.25 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.03 Total: 7.26 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 4.72 Total: -17.18 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -3.05 Total: -90.84 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.20 Total: -5.35 kcal Total: -63.77 3.52 -60.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.382 kcal (2) G-P(sol) polarization free energy of solvation -63.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds