Wall clock time and date at job start Mon Mar 30 2020 07:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.54993 * 179.91634 * 9 7 2 11 11 C 1.52995 * 109.46932 * 325.58135 * 10 9 7 12 12 H 1.08997 * 109.47604 * 54.99973 * 11 10 9 13 13 C 1.50704 * 109.47467 * 295.00264 * 11 10 9 14 14 O 1.20828 * 119.99751 * 359.97438 * 13 11 10 15 15 O 1.34225 * 120.00302 * 179.97438 * 13 11 10 16 16 C 1.52999 * 109.47138 * 175.00202 * 11 10 9 17 17 C 1.53181 * 109.54623 * 299.82235 * 16 11 10 18 18 C 1.53102 * 109.15681 * 183.24241 * 17 16 11 19 19 O 1.42900 * 109.48984 * 57.47483 * 18 17 16 20 20 C 1.42896 * 114.10049 * 298.88832 * 19 18 17 21 21 C 1.53093 * 109.41679 * 61.15636 * 20 19 18 22 22 C 1.53003 * 117.50023 * 34.20639 * 9 7 2 23 23 C 1.52999 * 117.50063 * 325.58420 * 9 7 2 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47557 * 85.58369 * 10 9 7 26 26 H 1.09004 * 109.47358 * 205.58248 * 10 9 7 27 27 H 0.96697 * 116.99941 * 179.97438 * 15 13 11 28 28 H 1.09003 * 109.54543 * 60.00395 * 16 11 10 29 29 H 1.08999 * 109.51715 * 303.05817 * 17 16 11 30 30 H 1.09001 * 109.51660 * 63.24318 * 17 16 11 31 31 H 1.09000 * 109.40714 * 297.49008 * 18 17 16 32 32 H 1.09003 * 109.47670 * 177.50001 * 18 17 16 33 33 H 1.09005 * 109.47935 * 301.17637 * 20 19 18 34 34 H 1.08997 * 109.48412 * 181.13884 * 20 19 18 35 35 H 1.08997 * 109.52717 * 182.49058 * 21 20 19 36 36 H 1.08998 * 109.57376 * 62.32922 * 21 20 19 37 37 H 1.08994 * 117.49976 * 359.97438 * 22 9 7 38 38 H 1.09000 * 117.49896 * 145.02352 * 22 9 7 39 39 H 1.09003 * 117.50192 * 214.98138 * 23 9 7 40 40 H 1.08998 * 117.50026 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0032 11 6 3.3849 -3.5075 -0.8204 12 1 3.8988 -2.6288 -0.4307 13 6 3.0151 -3.2745 -2.2626 14 8 1.8560 -3.3083 -2.6022 15 8 3.9734 -3.0297 -3.1701 16 6 4.3074 -4.7239 -0.7204 17 6 4.6880 -4.9596 0.7445 18 6 5.6745 -6.1276 0.8257 19 8 6.8208 -5.8402 0.0223 20 6 6.5304 -5.6585 -1.3649 21 6 5.5800 -4.4702 -1.5346 22 6 -0.0745 -2.5496 -0.7630 23 6 -0.0715 -2.5513 0.7670 24 1 -0.4850 0.8401 0.0004 25 1 2.3890 -4.0167 1.0207 26 1 1.5569 -4.5844 -0.4468 27 1 3.6876 -2.8869 -4.0827 28 1 3.7947 -5.6034 -1.1100 29 1 5.1549 -4.0613 1.1485 30 1 3.7929 -5.1962 1.3198 31 1 5.1927 -7.0346 0.4605 32 1 5.9831 -6.2713 1.8612 33 1 6.0598 -6.5593 -1.7589 34 1 7.4554 -5.4643 -1.9077 35 1 5.3223 -4.3573 -2.5876 36 1 6.0649 -3.5612 -1.1787 37 1 -0.4018 -1.6387 -1.2642 38 1 -0.3302 -3.4817 -1.2668 39 1 -0.3252 -3.4846 1.2698 40 1 -0.3963 -1.6419 1.2723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696830059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:55 Heat of formation + Delta-G solvation = -117.805814 kcal Electronic energy + Delta-G solvation = -22043.109628 eV Core-core repulsion = 18823.578843 eV Total energy + Delta-G solvation = -3219.530785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20112 -38.86004 -36.83511 -35.30523 -34.80643 -31.64381 -31.03233 -30.11814 -25.95512 -25.12013 -23.89990 -22.93069 -20.66112 -20.39859 -19.61885 -18.87586 -17.43079 -16.42577 -16.18673 -15.85678 -15.58488 -14.96496 -14.76230 -14.64617 -13.86174 -13.55585 -13.29595 -12.93500 -12.56771 -12.21961 -12.04890 -11.94400 -11.29041 -11.21999 -11.03139 -10.92433 -10.83165 -10.69995 -10.55677 -10.29675 -10.13377 -10.00208 -9.82365 -9.69529 -9.43646 -9.18573 -8.62281 -8.11202 -7.88860 -5.91895 -3.98530 3.03522 3.28648 3.34071 3.35705 3.67812 3.92889 4.39482 4.79531 4.91384 4.96310 5.10094 5.16140 5.26807 5.43717 5.51783 5.62978 5.74477 5.75251 5.84096 5.95843 6.00468 6.10008 6.19235 6.32876 6.41846 6.48292 6.61497 6.69660 6.80690 6.95722 7.15908 7.23420 7.29677 7.40347 7.52450 7.76004 8.09484 8.39456 8.53773 8.65754 8.98625 9.56125 11.03331 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.006339 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.008845 B = 4415.867592 C = 4528.453666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.481 4.481 8 H 0.058 0.942 9 C 0.019 3.981 10 C -0.062 4.062 11 C -0.060 4.060 12 H 0.118 0.882 13 C 0.484 3.516 14 O -0.487 6.487 15 O -0.526 6.526 16 C -0.083 4.083 17 C -0.151 4.151 18 C 0.062 3.938 19 O -0.388 6.388 20 C 0.062 3.938 21 C -0.159 4.159 22 C -0.160 4.160 23 C -0.199 4.199 24 H 0.258 0.742 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.394 0.606 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.208 -10.098 -2.294 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.019 3.981 10 C -0.099 4.099 11 C -0.079 4.079 12 H 0.136 0.864 13 C 0.325 3.675 14 O -0.371 6.371 15 O -0.338 6.338 16 C -0.102 4.102 17 C -0.188 4.188 18 C -0.015 4.015 19 O -0.307 6.307 20 C -0.015 4.015 21 C -0.196 4.196 22 C -0.198 4.198 23 C -0.237 4.237 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.251 0.749 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.012 -10.018 -1.897 14.290 hybrid contribution -0.251 1.154 -0.743 1.395 sum 9.761 -8.865 -2.640 13.447 Atomic orbital electron populations 1.70039 1.05732 1.25877 1.49472 1.24995 0.94909 0.99020 0.95128 0.86711 0.79649 0.83395 0.78581 1.21262 1.20185 1.20373 1.20594 0.92161 0.89211 1.49826 0.92355 1.18813 0.86223 0.91721 1.01360 1.21052 0.93247 0.98312 0.97297 1.21157 0.98775 0.99774 0.88165 0.86414 1.23408 0.83214 0.72475 0.88429 1.90729 1.20354 1.45517 1.80529 1.84619 1.42779 1.83922 1.22508 1.21200 0.95342 0.97653 0.95969 1.22302 1.00023 0.99965 0.96550 1.22584 0.87027 0.96338 0.95516 1.87894 1.32186 1.91690 1.18880 1.22601 0.99490 0.96993 0.82414 1.22489 0.95606 0.99052 1.02453 1.22618 1.04726 0.99528 0.92890 1.22881 1.06220 0.99275 0.95343 0.93163 0.91860 0.93281 0.74850 0.91342 0.90443 0.90038 0.93519 0.89027 0.93672 0.89194 0.88802 0.90747 0.88046 0.93981 0.94421 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.74 8.59 55.43 0.48 -24.26 16 2 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.48 -12.78 8.30 -34.44 -0.29 -13.06 16 8 H 0.06 1.49 5.75 -52.49 -0.30 1.18 16 9 C 0.02 0.47 1.60 -155.66 -0.25 0.23 16 10 C -0.06 -1.24 4.31 -26.74 -0.12 -1.36 16 11 C -0.06 -1.06 1.52 -91.77 -0.14 -1.20 16 12 H 0.12 2.25 5.91 -51.93 -0.31 1.95 16 13 C 0.48 9.07 7.09 36.01 0.26 9.32 16 14 O -0.49 -10.89 14.25 -18.75 -0.27 -11.16 16 15 O -0.53 -7.78 10.41 -39.24 -0.41 -8.19 16 16 C -0.08 -1.15 1.85 -90.43 -0.17 -1.32 16 17 C -0.15 -1.91 4.99 -26.58 -0.13 -2.04 16 18 C 0.06 0.70 6.84 37.21 0.25 0.95 16 19 O -0.39 -5.01 10.77 -35.23 -0.38 -5.39 16 20 C 0.06 0.69 6.84 37.21 0.25 0.95 16 21 C -0.16 -2.00 4.78 -26.58 -0.13 -2.13 16 22 C -0.16 -4.21 7.71 -26.73 -0.21 -4.42 16 23 C -0.20 -5.10 9.38 -26.73 -0.25 -5.35 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.06 1.16 6.26 -51.93 -0.32 0.84 16 26 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 27 H 0.39 4.30 9.10 45.56 0.41 4.72 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.01 6.51 -51.93 -0.34 0.67 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.17 5.57 -51.93 -0.29 0.88 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 2.98 6.27 -51.93 -0.33 2.65 16 38 H 0.04 1.07 7.85 -51.93 -0.41 0.66 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.11 2.95 6.29 -51.93 -0.33 2.62 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -31.04 306.05 -7.12 -38.16 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.12 Total: 8.01 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -1.00 Total: -17.85 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.48 Total: -24.26 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.06 Total: -24.74 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.04 -7.12 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696830059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.645 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds