Wall clock time and date at job start Mon Mar 30 2020 07:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.54993 * 179.91634 * 9 7 2 11 11 C 1.52995 * 109.46932 * 325.58135 * 10 9 7 12 12 H 1.08997 * 109.47604 * 54.99973 * 11 10 9 13 13 C 1.50704 * 109.47467 * 295.00264 * 11 10 9 14 14 O 1.20828 * 119.99751 * 359.97438 * 13 11 10 15 15 O 1.34225 * 120.00302 * 179.97438 * 13 11 10 16 16 C 1.52999 * 109.47138 * 175.00202 * 11 10 9 17 17 C 1.53181 * 109.54623 * 299.82235 * 16 11 10 18 18 C 1.53102 * 109.15681 * 183.24241 * 17 16 11 19 19 O 1.42900 * 109.48984 * 57.47483 * 18 17 16 20 20 C 1.42896 * 114.10049 * 298.88832 * 19 18 17 21 21 C 1.53093 * 109.41679 * 61.15636 * 20 19 18 22 22 C 1.53003 * 117.50023 * 34.20639 * 9 7 2 23 23 C 1.52999 * 117.50063 * 325.58420 * 9 7 2 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47557 * 85.58369 * 10 9 7 26 26 H 1.09004 * 109.47358 * 205.58248 * 10 9 7 27 27 H 0.96697 * 116.99941 * 179.97438 * 15 13 11 28 28 H 1.09003 * 109.54543 * 60.00395 * 16 11 10 29 29 H 1.08999 * 109.51715 * 303.05817 * 17 16 11 30 30 H 1.09001 * 109.51660 * 63.24318 * 17 16 11 31 31 H 1.09000 * 109.40714 * 297.49008 * 18 17 16 32 32 H 1.09003 * 109.47670 * 177.50001 * 18 17 16 33 33 H 1.09005 * 109.47935 * 301.17637 * 20 19 18 34 34 H 1.08997 * 109.48412 * 181.13884 * 20 19 18 35 35 H 1.08997 * 109.52717 * 182.49058 * 21 20 19 36 36 H 1.08998 * 109.57376 * 62.32922 * 21 20 19 37 37 H 1.08994 * 117.49976 * 359.97438 * 22 9 7 38 38 H 1.09000 * 117.49896 * 145.02352 * 22 9 7 39 39 H 1.09003 * 117.50192 * 214.98138 * 23 9 7 40 40 H 1.08998 * 117.50026 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0032 11 6 3.3849 -3.5075 -0.8204 12 1 3.8988 -2.6288 -0.4307 13 6 3.0151 -3.2745 -2.2626 14 8 1.8560 -3.3083 -2.6022 15 8 3.9734 -3.0297 -3.1701 16 6 4.3074 -4.7239 -0.7204 17 6 4.6880 -4.9596 0.7445 18 6 5.6745 -6.1276 0.8257 19 8 6.8208 -5.8402 0.0223 20 6 6.5304 -5.6585 -1.3649 21 6 5.5800 -4.4702 -1.5346 22 6 -0.0745 -2.5496 -0.7630 23 6 -0.0715 -2.5513 0.7670 24 1 -0.4850 0.8401 0.0004 25 1 2.3890 -4.0167 1.0207 26 1 1.5569 -4.5844 -0.4468 27 1 3.6876 -2.8869 -4.0827 28 1 3.7947 -5.6034 -1.1100 29 1 5.1549 -4.0613 1.1485 30 1 3.7929 -5.1962 1.3198 31 1 5.1927 -7.0346 0.4605 32 1 5.9831 -6.2713 1.8612 33 1 6.0598 -6.5593 -1.7589 34 1 7.4554 -5.4643 -1.9077 35 1 5.3223 -4.3573 -2.5876 36 1 6.0649 -3.5612 -1.1787 37 1 -0.4018 -1.6387 -1.2642 38 1 -0.3302 -3.4817 -1.2668 39 1 -0.3252 -3.4846 1.2698 40 1 -0.3963 -1.6419 1.2723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696830059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:55 Heat of formation + Delta-G solvation = -137.080939 kcal Electronic energy + Delta-G solvation = -22043.945461 eV Core-core repulsion = 18823.578843 eV Total energy + Delta-G solvation = -3220.366617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55220 -39.94392 -38.61163 -36.76845 -36.10833 -33.63913 -31.97781 -31.50600 -27.79632 -26.73393 -24.98144 -24.00649 -22.60095 -21.79703 -20.89603 -20.69895 -18.83917 -17.99427 -17.44976 -17.26644 -16.78737 -16.74616 -16.02610 -15.69252 -15.48164 -14.83276 -14.64144 -14.48669 -14.04314 -13.53971 -13.41388 -13.19887 -13.07261 -12.93582 -12.56858 -12.35463 -12.32826 -12.19001 -12.07531 -11.89289 -11.73573 -11.40508 -11.27800 -11.13103 -11.01011 -10.65194 -10.37542 -10.06537 -9.89765 -7.99134 -6.11554 1.40121 1.40266 1.47457 1.57006 2.37805 2.41350 3.07720 3.08355 3.65234 3.79746 3.93970 4.03477 4.16519 4.31703 4.40537 4.43367 4.50206 4.56945 4.67620 4.80902 4.85184 4.88439 4.95098 4.97951 5.06016 5.09271 5.18141 5.27337 5.31067 5.39380 5.47132 5.50039 5.53711 5.65549 5.87611 6.00750 6.25946 6.37121 6.44855 6.95307 7.30036 7.46101 8.94619 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.006339 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.008845 B = 4415.867592 C = 4528.453666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.290 1.290 5 H -0.266 1.266 6 H -0.274 1.274 7 C -0.492 4.492 8 H 0.067 0.933 9 C 0.021 3.979 10 C -0.056 4.056 11 C -0.056 4.056 12 H 0.104 0.896 13 C 0.485 3.515 14 O -0.530 6.530 15 O -0.511 6.511 16 C -0.075 4.075 17 C -0.150 4.150 18 C 0.062 3.938 19 O -0.404 6.404 20 C 0.062 3.938 21 C -0.154 4.154 22 C -0.164 4.164 23 C -0.201 4.201 24 H 0.254 0.746 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.413 0.587 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.355 -11.197 -2.216 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.216 1.216 5 H -0.191 1.191 6 H -0.200 1.200 7 C -0.530 4.530 8 H 0.085 0.915 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.075 4.075 12 H 0.122 0.878 13 C 0.328 3.672 14 O -0.418 6.418 15 O -0.325 6.325 16 C -0.094 4.094 17 C -0.187 4.187 18 C -0.014 4.014 19 O -0.323 6.323 20 C -0.014 4.014 21 C -0.192 4.192 22 C -0.202 4.202 23 C -0.239 4.239 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.274 0.726 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.195 -11.121 -1.831 16.606 hybrid contribution -0.925 1.504 -0.820 1.947 sum 11.270 -9.618 -2.652 15.051 Atomic orbital electron populations 1.70218 1.07068 1.26194 1.50402 1.25775 0.95659 1.02337 0.95172 0.85757 0.78416 0.79475 0.78894 1.21583 1.19093 1.19954 1.20992 0.92820 0.90066 1.49082 0.91463 1.19055 0.86183 0.93412 0.99324 1.20988 0.93531 0.95810 0.99032 1.21077 0.98157 1.01057 0.87217 0.87785 1.23634 0.82893 0.71409 0.89281 1.90726 1.22088 1.47641 1.81390 1.84568 1.41350 1.83025 1.23552 1.21156 0.95079 0.95843 0.97326 1.22297 1.00587 1.00362 0.95481 1.22679 0.86363 0.95963 0.96389 1.87883 1.33042 1.91734 1.19663 1.22691 0.99970 0.96723 0.82041 1.22440 0.95164 0.99428 1.02147 1.22362 1.06857 0.97968 0.93059 1.22802 1.07364 0.99112 0.94636 0.93643 0.89941 0.93245 0.72646 0.90598 0.91428 0.89677 0.92154 0.87506 0.92348 0.87649 0.88619 0.91832 0.91526 0.93559 0.92058 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.32 8.59 21.45 0.18 -52.13 16 2 C 0.01 0.53 5.28 84.66 0.45 0.98 16 3 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.49 -26.16 8.30 25.60 0.21 -25.94 16 8 H 0.07 3.38 5.75 -2.91 -0.02 3.36 16 9 C 0.02 1.02 1.60 -52.93 -0.08 0.94 16 10 C -0.06 -2.20 4.31 30.59 0.13 -2.06 16 11 C -0.06 -1.91 1.52 -11.54 -0.02 -1.93 16 12 H 0.10 3.86 5.91 -2.39 -0.01 3.85 16 13 C 0.48 17.67 7.09 71.24 0.51 18.17 16 14 O -0.53 -23.67 14.25 21.96 0.31 -23.36 16 15 O -0.51 -14.18 10.41 -51.37 -0.53 -14.71 16 16 C -0.08 -1.92 1.85 -10.67 -0.02 -1.94 16 17 C -0.15 -3.42 4.99 30.69 0.15 -3.27 16 18 C 0.06 1.21 6.84 72.02 0.49 1.70 16 19 O -0.40 -9.25 10.77 -148.98 -1.60 -10.85 16 20 C 0.06 1.20 6.84 72.01 0.49 1.70 16 21 C -0.15 -3.51 4.78 30.69 0.15 -3.37 16 22 C -0.16 -8.85 7.71 30.60 0.24 -8.62 16 23 C -0.20 -10.40 9.38 30.59 0.29 -10.11 16 24 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.08 2.86 6.26 -2.39 -0.01 2.85 16 26 H 0.05 1.91 7.71 -2.39 -0.02 1.89 16 27 H 0.41 8.21 9.10 -74.06 -0.67 7.53 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.87 6.51 -2.39 -0.02 1.86 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 2.12 5.57 -2.39 -0.01 2.11 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 4.06 6.27 -2.39 -0.01 4.05 16 38 H 0.05 2.40 7.85 -2.39 -0.02 2.38 16 39 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.08 4.49 6.29 -2.39 -0.02 4.48 16 Total: -1.00 -67.09 306.05 3.75 -63.35 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.38 Total: 26.03 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 2.98 Total: -33.75 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.18 Total: -52.13 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.83 Total: -48.92 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.09 3.75 -63.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696830059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.734 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds