Wall clock time and date at job start Mon Mar 30 2020 07:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48497 * 109.47194 * 240.00370 * 3 2 1 5 5 H 1.48499 * 109.46693 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46881 * 120.00001 * 3 2 1 7 7 C 1.37876 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00630 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47050 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47166 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47319 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47459 * 55.00543 * 13 12 11 15 15 C 1.50706 * 109.47215 * 295.00377 * 13 12 11 16 16 O 1.20825 * 119.99859 * 359.97438 * 15 13 12 17 17 O 1.34224 * 120.00295 * 180.02562 * 15 13 12 18 18 C 1.52998 * 109.47228 * 175.00494 * 13 12 11 19 19 C 1.53007 * 109.47152 * 299.99769 * 18 13 12 20 20 C 1.52990 * 109.47261 * 180.02562 * 19 18 13 21 21 C 1.52996 * 109.47338 * 60.00096 * 20 19 18 22 22 C 1.52997 * 109.47251 * 299.99743 * 21 20 19 23 23 C 1.53002 * 109.46980 * 60.00081 * 22 21 20 24 24 H 0.96999 * 119.99967 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00167 * 9 7 2 26 26 H 1.08999 * 109.47119 * 300.00406 * 9 7 2 27 27 H 1.09003 * 109.47002 * 60.00297 * 10 9 7 28 28 H 1.08998 * 109.46940 * 300.00005 * 10 9 7 29 29 H 1.09003 * 109.46735 * 60.00428 * 11 10 9 30 30 H 1.08999 * 109.47482 * 300.00516 * 11 10 9 31 31 H 1.08999 * 109.47042 * 60.00200 * 12 11 10 32 32 H 1.08999 * 109.47480 * 300.00688 * 12 11 10 33 33 H 0.96700 * 117.00196 * 179.97438 * 17 15 13 34 34 H 1.09000 * 109.47766 * 59.99578 * 18 13 12 35 35 H 1.09000 * 109.46629 * 300.00505 * 19 18 13 36 36 H 1.08995 * 109.46767 * 60.00049 * 19 18 13 37 37 H 1.09003 * 109.47284 * 300.00184 * 20 19 18 38 38 H 1.09003 * 109.47181 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47638 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47459 * 60.00250 * 21 20 19 41 41 H 1.08995 * 109.47409 * 300.00117 * 22 21 20 42 42 H 1.08998 * 109.47654 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47689 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47318 * 59.99799 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0031 13 6 1.7095 -7.4750 -0.0031 14 1 1.0165 -7.4945 -0.8442 15 6 0.9398 -7.6107 1.2854 16 8 0.9975 -6.7374 2.1184 17 8 0.1908 -8.7021 1.5081 18 6 2.6989 -8.6351 -0.1306 19 6 3.4804 -8.4975 -1.4388 20 6 4.4693 -9.6578 -1.5667 21 6 3.7038 -10.9826 -1.5669 22 6 2.9224 -11.1204 -0.2588 23 6 1.9334 -9.9600 -0.1309 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6048 0.8878 28 1 2.8713 -3.6040 -0.8923 29 1 0.8527 -5.0447 -0.8906 30 1 0.8546 -5.0450 0.8894 31 1 3.1025 -6.0927 0.8860 32 1 3.0999 -6.0920 -0.8939 33 1 -0.2844 -8.7443 2.3492 34 1 3.3920 -8.6158 0.7103 35 1 2.7873 -8.5168 -2.2798 36 1 4.0254 -7.5535 -1.4388 37 1 5.1624 -9.6389 -0.7256 38 1 5.0263 -9.5595 -2.4984 39 1 4.4083 -11.8094 -1.6576 40 1 3.0107 -11.0016 -2.4080 41 1 3.6155 -11.1014 0.5822 42 1 2.3767 -12.0639 -0.2591 43 1 1.3769 -10.0577 0.8013 44 1 1.2403 -9.9789 -0.9720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699947618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:08 Heat of formation + Delta-G solvation = -168.601335 kcal Electronic energy + Delta-G solvation = -20916.562642 eV Core-core repulsion = 17830.662292 eV Total energy + Delta-G solvation = -3085.900350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.69942 -39.37763 -37.53883 -36.62818 -35.25733 -33.71530 -31.60284 -30.83000 -28.36639 -26.27289 -24.22784 -23.09542 -22.84067 -21.72155 -20.95235 -20.59687 -19.00616 -18.44653 -17.85942 -16.97175 -16.53510 -15.99831 -15.82380 -15.16460 -14.96690 -14.76128 -14.56075 -14.33607 -14.16892 -13.70886 -13.58124 -13.17452 -12.97759 -12.86568 -12.71949 -12.67430 -12.58305 -12.23805 -12.10221 -11.96756 -11.87476 -11.74550 -11.50595 -11.33507 -11.29186 -11.10331 -11.07227 -10.72628 -10.65393 -10.56132 -8.20571 -6.32782 1.27515 1.38030 1.42513 1.50371 2.18510 2.40386 3.11536 3.54287 3.67874 3.91121 4.06040 4.10283 4.24640 4.30519 4.42144 4.46169 4.54073 4.57464 4.65728 4.72821 4.74806 4.79434 4.85594 4.93882 4.98333 5.05922 5.13564 5.27648 5.30347 5.31580 5.35048 5.37208 5.38018 5.38784 5.50333 5.53356 5.61822 5.66544 5.73279 5.79336 5.86285 6.25009 6.84424 7.07285 7.36463 8.91443 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029439 B = 0.003420 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.892597 B = 8184.822811 C = 8889.955697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.120 4.120 12 C -0.097 4.097 13 C -0.072 4.072 14 H 0.119 0.881 15 C 0.482 3.518 16 O -0.547 6.547 17 O -0.502 6.502 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.123 4.123 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.020 1.020 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.419 0.581 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -25.872 -2.613 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.157 4.157 12 C -0.135 4.135 13 C -0.091 4.091 14 H 0.137 0.863 15 C 0.326 3.674 16 O -0.437 6.437 17 O -0.316 6.316 18 C -0.088 4.088 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.160 4.160 24 H 0.073 0.927 25 H 0.009 0.991 26 H -0.002 1.002 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.280 0.720 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.244 -25.523 -2.755 26.420 hybrid contribution -0.455 1.248 0.872 1.589 sum 5.790 -24.275 -1.884 25.026 Atomic orbital electron populations 1.70111 1.07961 1.27874 1.51697 1.26073 0.95841 1.03638 0.94631 0.85443 0.78246 0.77712 0.79303 1.18754 1.20665 1.19248 1.21730 0.93598 0.92505 1.50617 0.92104 1.19021 0.94546 0.93596 0.94221 1.21408 0.97890 0.93868 1.00180 1.21685 0.98507 0.94420 1.01091 1.21542 0.97607 0.90989 1.03314 1.21295 0.97557 0.97514 0.92768 0.86272 1.23862 0.76439 0.78049 0.89064 1.90751 1.62878 1.42028 1.48066 1.84599 1.58840 1.42033 1.46081 1.21075 0.95572 0.92678 0.99471 1.21674 0.98351 0.99102 0.96275 1.21523 0.97617 0.94388 1.02045 1.21558 0.99112 0.97229 0.97818 1.21524 0.97989 0.98150 0.97797 1.21853 0.97720 0.92828 1.03613 0.92743 0.99056 1.00164 0.94042 0.92436 0.92578 0.93321 0.92296 0.88455 0.72019 0.91426 0.91046 0.91406 0.92253 0.91297 0.91580 0.91797 0.92465 0.91349 0.90026 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.29 21.45 0.28 -59.41 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -33.03 9.11 25.60 0.23 -32.79 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -4.29 5.15 30.60 0.16 -4.13 16 11 C -0.12 -4.42 4.95 30.59 0.15 -4.27 16 12 C -0.10 -2.66 4.12 30.59 0.13 -2.54 16 13 C -0.07 -1.58 1.92 -11.54 -0.02 -1.61 16 14 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 15 C 0.48 12.16 7.28 71.24 0.52 12.68 16 16 O -0.55 -18.93 14.73 21.97 0.32 -18.60 16 17 O -0.50 -8.78 10.34 -51.35 -0.53 -9.32 16 18 C -0.07 -1.18 1.77 -10.79 -0.02 -1.20 16 19 C -0.12 -1.77 4.86 30.59 0.15 -1.62 16 20 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 21 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 22 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 23 C -0.12 -1.82 4.68 30.60 0.14 -1.67 16 24 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 2.04 5.96 -2.39 -0.01 2.02 16 31 H 0.06 1.74 7.96 -2.39 -0.02 1.72 16 32 H 0.10 2.27 6.17 -2.39 -0.01 2.26 16 33 H 0.42 4.34 9.10 -74.06 -0.67 3.67 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.09 6.32 -2.39 -0.02 1.07 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.27 5.32 -2.39 -0.01 1.26 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.85 340.27 4.98 -68.87 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.29 Total: 9.93 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 2.59 Total: -39.39 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.28 Total: -59.41 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.21 Total: -27.92 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -73.85 4.98 -68.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699947618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.734 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds