Wall clock time and date at job start Mon Mar 30 2020 07:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 O 1.63100 * 109.47360 * 239.99744 * 2 1 3 6 6 C 1.42899 * 113.99854 * 59.99973 * 5 2 1 7 7 C 1.50705 * 109.47208 * 90.00242 * 6 5 2 8 8 N 1.27940 * 119.99967 * 250.00144 * 7 6 5 9 9 Si 1.86798 * 119.99895 * 69.99409 * 7 6 5 10 10 H 1.48501 * 109.46750 * 90.00259 * 9 7 6 11 11 H 1.48504 * 109.47162 * 210.00153 * 9 7 6 12 12 H 1.48499 * 109.47487 * 330.00623 * 9 7 6 13 13 C 1.52999 * 109.46787 * 209.99999 * 6 5 2 14 14 H 1.09001 * 109.47343 * 300.00242 * 13 6 5 15 15 C 1.53005 * 109.46802 * 180.02562 * 13 6 5 16 16 C 1.53000 * 109.46886 * 239.99725 * 15 13 6 17 17 C 1.53001 * 109.46959 * 60.00617 * 16 15 13 18 18 C 1.53005 * 109.46818 * 299.99425 * 17 16 15 19 19 C 1.52998 * 109.47378 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.47158 * 300.00409 * 19 18 17 21 21 C 1.53000 * 109.47598 * 300.00045 * 16 15 13 22 22 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 23 23 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 25 25 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 26 26 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 28 28 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 29 29 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 31 31 H 1.08997 * 109.47222 * 329.99751 * 6 5 2 32 32 H 0.96992 * 120.00062 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47283 * 0.02562 * 15 13 6 34 34 H 1.09000 * 109.46923 * 120.00038 * 15 13 6 35 35 H 1.09003 * 109.46777 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47186 * 59.99476 * 17 16 15 37 37 H 1.09006 * 109.46828 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.46865 * 240.00232 * 18 17 16 39 39 H 1.09002 * 109.46763 * 120.00063 * 18 17 16 40 40 H 1.08993 * 109.47568 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.46635 * 299.99174 * 20 19 18 42 42 H 1.09001 * 109.47218 * 179.97438 * 20 19 18 43 43 H 1.08990 * 109.47312 * 179.97438 * 21 16 15 44 44 H 1.09000 * 109.47201 * 300.00294 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 8 2.4067 -0.7689 -1.3316 6 6 1.9851 -0.1726 -2.5599 7 6 2.9970 0.8573 -2.9918 8 7 2.7013 2.1014 -2.9501 9 14 4.6830 0.3175 -3.5878 10 1 4.6434 0.1027 -5.0566 11 1 5.6813 1.3695 -3.2680 12 1 5.0648 -0.9488 -2.9125 13 6 1.8657 -1.2531 -3.6367 14 1 2.8341 -1.7326 -3.7792 15 6 1.4149 -0.6145 -4.9520 16 6 0.0866 -1.2343 -5.3907 17 6 -0.9721 -0.9863 -4.3143 18 6 -0.5212 -1.6248 -2.9990 19 6 0.8382 -2.2979 -3.1984 20 6 0.7194 -3.3781 -4.2754 21 6 0.2677 -2.7403 -5.5907 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 2.1207 2.2704 0.8899 26 1 3.5740 1.7565 0.0005 27 1 2.1207 2.2703 -0.8901 28 1 2.1207 -1.9058 1.5213 29 1 3.5740 -0.8777 1.5215 30 1 2.1207 -0.3642 2.4111 31 1 1.0167 0.3068 -2.4174 32 1 3.3524 2.7642 -3.2283 33 1 1.2862 0.4584 -4.8097 34 1 2.1691 -0.7911 -5.7188 35 1 -0.2344 -0.7797 -6.3280 36 1 -1.1011 0.0866 -4.1719 37 1 -1.9185 -1.4274 -4.6271 38 1 -1.2535 -2.3695 -2.6869 39 1 -0.4361 -0.8551 -2.2319 40 1 1.1596 -2.7524 -2.2613 41 1 -0.0125 -4.1231 -3.9634 42 1 1.6881 -3.8573 -4.4178 43 1 -0.6786 -3.1818 -5.9028 44 1 1.0219 -2.9169 -6.3576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701177124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:45 Heat of formation + Delta-G solvation = -70.572500 kcal Electronic energy + Delta-G solvation = -20999.508109 eV Core-core repulsion = 18267.409317 eV Total energy + Delta-G solvation = -2732.098792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73322 -38.52520 -35.85682 -32.65811 -32.15151 -31.71291 -29.47046 -28.52235 -28.32202 -27.12859 -23.43138 -23.36192 -22.40568 -20.95632 -18.73614 -17.34949 -17.21897 -16.99642 -16.71530 -16.39208 -15.68948 -14.77929 -14.58476 -14.25095 -14.04111 -13.79849 -13.69348 -13.35307 -13.28997 -13.15218 -13.09863 -12.93303 -12.87467 -12.84563 -12.82252 -12.69990 -12.57775 -12.50046 -12.23927 -12.04502 -11.72325 -11.50520 -11.22125 -10.70125 -10.61931 -10.58881 -10.57134 -10.36171 -9.84225 0.61807 1.05129 1.39169 1.49555 1.74663 1.90114 1.98015 2.12473 2.56790 3.36857 3.66187 3.74785 3.84878 4.21381 4.24365 4.40126 4.44069 4.48275 4.50992 4.56383 4.61105 4.62546 4.70183 4.76103 4.78075 4.79381 4.81563 4.82208 4.85831 4.87414 4.94156 5.04384 5.22447 5.23265 5.30131 5.32085 5.45039 5.49744 5.50800 5.54314 5.56863 5.60906 5.66803 5.70797 5.73960 6.76980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.512 4.512 2 Si 1.281 2.719 3 C -0.529 4.529 4 C -0.477 4.477 5 O -0.618 6.618 6 C 0.150 3.850 7 C -0.029 4.029 8 N -0.620 5.620 9 Si 0.930 3.070 10 H -0.230 1.230 11 H -0.258 1.258 12 H -0.228 1.228 13 C -0.083 4.083 14 H 0.085 0.915 15 C -0.118 4.118 16 C -0.085 4.085 17 C -0.116 4.116 18 C -0.129 4.129 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.115 4.115 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.347 0.653 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.183 -1.012 -1.058 1.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.614 4.614 2 Si 1.417 2.583 3 C -0.629 4.629 4 C -0.582 4.582 5 O -0.575 6.575 6 C 0.092 3.908 7 C -0.278 4.278 8 N -0.236 5.236 9 Si 0.747 3.253 10 H -0.153 1.153 11 H -0.182 1.182 12 H -0.150 1.150 13 C -0.102 4.102 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.103 4.103 17 C -0.154 4.154 18 C -0.167 4.167 19 C -0.094 4.094 20 C -0.153 4.153 21 C -0.152 4.152 22 H 0.088 0.912 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.071 -0.943 -1.169 1.504 hybrid contribution 0.385 0.701 0.236 0.834 sum 0.314 -0.242 -0.933 1.014 Atomic orbital electron populations 1.27087 1.24932 1.04835 1.04566 0.76779 0.63410 0.60507 0.57651 1.27352 1.06013 1.24156 1.05416 1.26418 1.06728 1.08943 1.16132 1.85409 1.79535 1.66391 1.26185 1.20904 0.94846 0.90665 0.84364 1.30948 1.06470 0.95608 0.94806 1.68103 1.40103 1.04210 1.11154 0.85650 0.74676 0.82730 0.82293 1.15314 1.18177 1.15026 1.21297 1.00405 0.95239 0.93254 0.89698 1.21697 0.97595 1.00099 0.96155 1.21011 0.94896 0.95986 0.98409 1.21564 0.98173 1.00487 0.95167 1.21807 0.96673 1.00412 0.97763 1.20943 0.94255 0.95060 0.99182 1.21561 1.01587 0.97305 0.94810 1.21562 1.01362 0.94816 0.97505 0.91229 0.90495 0.90614 0.91283 0.92235 0.89662 0.90604 0.91139 0.90130 0.89473 0.83526 0.91347 0.90891 0.90950 0.92239 0.91966 0.91762 0.91030 0.89933 0.91757 0.91682 0.92027 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.58 7.34 113.37 0.83 1.41 16 2 Si 1.28 -1.60 12.68 68.60 0.87 -0.73 16 3 C -0.53 -0.87 7.98 113.37 0.90 0.04 16 4 C -0.48 0.28 8.65 113.37 0.98 1.26 16 5 O -0.62 -0.45 7.38 -148.98 -1.10 -1.55 16 6 C 0.15 0.06 0.91 29.85 0.03 0.09 16 7 C -0.03 -0.02 2.97 88.68 0.26 0.24 16 8 N -0.62 -0.61 11.40 24.11 0.27 -0.34 16 9 Si 0.93 0.36 27.15 68.60 1.86 2.22 16 10 H -0.23 0.10 7.11 99.48 0.71 0.81 16 11 H -0.26 -0.43 7.11 99.48 0.71 0.28 16 12 H -0.23 -0.37 7.11 99.48 0.71 0.34 16 13 C -0.08 0.05 1.54 -10.81 -0.02 0.03 16 14 H 0.08 -0.09 6.51 -2.39 -0.02 -0.10 16 15 C -0.12 0.15 4.70 30.60 0.14 0.30 16 16 C -0.08 0.12 3.19 -10.79 -0.03 0.09 16 17 C -0.12 0.12 5.71 30.60 0.17 0.29 16 18 C -0.13 0.13 5.36 30.60 0.16 0.29 16 19 C -0.08 0.07 2.58 -10.81 -0.03 0.04 16 20 C -0.12 0.18 5.71 30.59 0.17 0.35 16 21 C -0.11 0.20 5.71 30.59 0.17 0.37 16 22 H 0.07 -0.05 6.07 -2.39 -0.01 -0.06 16 23 H 0.08 -0.12 7.82 -2.39 -0.02 -0.14 16 24 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 25 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 26 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 27 H 0.08 0.26 5.48 -2.38 -0.01 0.25 16 28 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 30 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 31 H 0.09 -0.03 4.56 -2.39 -0.01 -0.04 16 32 H 0.35 -0.61 8.23 -92.71 -0.76 -1.37 16 33 H 0.07 -0.06 6.98 -2.39 -0.02 -0.07 16 34 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 38 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.07 -0.09 3.68 -2.39 -0.01 -0.09 16 40 H 0.08 -0.04 7.68 -2.39 -0.02 -0.06 16 41 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -3.83 320.34 6.62 2.79 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: 0.95 Total: -1.61 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 3.76 Total: 4.81 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: 0.27 Total: -0.34 kcal Atomic # 8 Polarization: -0.45 SS G_CDS: -1.10 Total: -1.55 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: 2.73 Total: 1.48 kcal Total: -3.83 6.62 2.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701177124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.363 kcal (2) G-P(sol) polarization free energy of solvation -3.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 2.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds