Wall clock time and date at job start Mon Mar 30 2020 07:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86308 * 109.47028 * 2 1 4 4 C 1.86296 * 109.47183 * 240.00306 * 2 1 3 5 5 O 1.63099 * 109.47051 * 119.99690 * 2 1 3 6 6 C 1.42898 * 113.99618 * 60.00398 * 5 2 1 7 7 C 1.50703 * 109.47171 * 89.99737 * 6 5 2 8 8 N 1.27946 * 120.00096 * 249.99525 * 7 6 5 9 9 Si 1.86798 * 119.99984 * 70.00122 * 7 6 5 10 10 H 1.48499 * 109.47092 * 359.97438 * 9 7 6 11 11 H 1.48501 * 109.47484 * 120.00007 * 9 7 6 12 12 H 1.48504 * 109.46852 * 239.99981 * 9 7 6 13 13 C 1.53002 * 109.47113 * 209.99571 * 6 5 2 14 14 H 1.09002 * 109.47070 * 300.00130 * 13 6 5 15 15 C 1.52997 * 109.46817 * 59.99950 * 13 6 5 16 16 C 1.53007 * 109.47165 * 120.00246 * 15 13 6 17 17 C 1.52998 * 109.47103 * 59.99525 * 16 15 13 18 18 C 1.52997 * 109.47498 * 300.00271 * 17 16 15 19 19 C 1.53000 * 109.47233 * 179.97438 * 13 6 5 20 20 C 1.52996 * 109.47328 * 300.00469 * 19 13 6 21 21 C 1.53002 * 109.46891 * 299.99597 * 20 19 13 22 22 H 1.08996 * 109.47415 * 300.00008 * 1 2 3 23 23 H 1.09004 * 109.47545 * 60.00133 * 1 2 3 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46741 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46849 * 300.00293 * 3 2 1 27 27 H 1.09002 * 109.46659 * 59.99861 * 3 2 1 28 28 H 1.09001 * 109.47003 * 299.99818 * 4 2 1 29 29 H 1.08997 * 109.47280 * 59.99809 * 4 2 1 30 30 H 1.09004 * 109.47191 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47711 * 329.99869 * 6 5 2 32 32 H 0.96993 * 120.00047 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47508 * 239.99895 * 15 13 6 34 34 H 1.08998 * 109.47420 * 0.02562 * 15 13 6 35 35 H 1.09000 * 109.47257 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.47174 * 180.02562 * 17 16 15 37 37 H 1.09000 * 109.46837 * 60.00799 * 17 16 15 38 38 H 1.08993 * 109.47194 * 239.99494 * 18 17 16 39 39 H 1.09002 * 109.46695 * 119.99508 * 18 17 16 40 40 H 1.09004 * 109.46724 * 60.00652 * 19 13 6 41 41 H 1.08992 * 109.47554 * 59.99639 * 20 19 13 42 42 H 1.09004 * 109.47108 * 179.97438 * 20 19 13 43 43 H 1.08998 * 109.47214 * 240.00229 * 21 20 19 44 44 H 1.08999 * 109.46656 * 120.00077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5211 5 8 2.4066 -0.7688 1.3317 6 6 1.9850 -2.1307 1.4294 7 6 2.9969 -3.0195 0.7533 8 7 2.7012 -3.6055 -0.3450 9 14 4.6829 -3.2660 1.5189 10 1 4.7739 -2.4839 2.7779 11 1 4.8864 -4.7069 1.8148 12 1 5.7289 -2.8025 0.5721 13 6 1.8656 -2.5231 2.9034 14 1 2.8340 -2.4068 3.3900 15 6 0.8383 -1.6207 3.5897 16 6 -0.2981 -2.4772 4.1520 17 6 0.2673 -3.4713 5.1683 18 6 1.2946 -4.3737 4.4820 19 6 1.4135 -3.9811 3.0080 20 6 0.0541 -4.1438 2.3251 21 6 -0.9728 -3.2410 3.0117 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5739 1.7565 -0.0005 26 1 2.1206 2.2704 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9058 -1.5212 29 1 2.1207 -0.3643 -2.4111 30 1 3.5740 -0.8785 -1.5209 31 1 1.0166 -2.2471 0.9428 32 1 3.3526 -4.1773 -0.7803 33 1 1.3187 -1.0757 4.4024 34 1 0.4351 -0.9128 2.8656 35 1 -1.0298 -1.8343 4.6414 36 1 -0.5421 -4.0817 5.5685 37 1 0.7478 -2.9263 5.9810 38 1 0.9731 -5.4124 4.5566 39 1 2.2630 -4.2573 4.9686 40 1 2.1452 -4.6242 2.5189 41 1 0.1392 -3.8642 1.2751 42 1 -0.2677 -5.1826 2.3992 43 1 -1.7825 -3.8509 3.4122 44 1 -1.3754 -2.5327 2.2876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701177126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:50 Heat of formation + Delta-G solvation = -83.899644 kcal Electronic energy + Delta-G solvation = -20962.671668 eV Core-core repulsion = 18229.994967 eV Total energy + Delta-G solvation = -2732.676701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79270 -38.54776 -35.84732 -32.79902 -32.02543 -31.73300 -29.48689 -28.53280 -28.30534 -27.27933 -23.47667 -23.05978 -22.83581 -20.92204 -18.78655 -17.47721 -17.32544 -16.95718 -16.66720 -16.19371 -15.91458 -14.78977 -14.56753 -14.25445 -14.06460 -13.77160 -13.66517 -13.47996 -13.27746 -13.17096 -13.10288 -13.01951 -12.95510 -12.94671 -12.87075 -12.83380 -12.58783 -12.55628 -12.13405 -12.05971 -11.71030 -11.58365 -11.24714 -10.77242 -10.67489 -10.63861 -10.56296 -10.37869 -9.82914 0.61709 1.05367 1.42472 1.47387 1.73872 1.89064 1.93929 2.09496 2.55146 3.35683 3.63049 3.64739 3.77068 4.18647 4.20804 4.27396 4.39538 4.45587 4.47703 4.49801 4.53731 4.58376 4.68321 4.71365 4.74183 4.75331 4.78046 4.79823 4.81131 4.85728 4.98042 5.00794 5.14840 5.18904 5.25396 5.30568 5.37736 5.43740 5.47252 5.48844 5.49740 5.56773 5.60592 5.65634 5.76220 6.74006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.507 4.507 2 Si 1.254 2.746 3 C -0.469 4.469 4 C -0.518 4.518 5 O -0.612 6.612 6 C 0.154 3.846 7 C -0.029 4.029 8 N -0.610 5.610 9 Si 0.920 3.080 10 H -0.221 1.221 11 H -0.242 1.242 12 H -0.243 1.243 13 C -0.085 4.085 14 H 0.088 0.912 15 C -0.102 4.102 16 C -0.090 4.090 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.083 4.083 20 C -0.119 4.119 21 C -0.115 4.115 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -0.475 1.196 1.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.609 4.609 2 Si 1.390 2.610 3 C -0.574 4.574 4 C -0.621 4.621 5 O -0.569 6.569 6 C 0.096 3.904 7 C -0.279 4.279 8 N -0.225 5.225 9 Si 0.736 3.264 10 H -0.142 1.142 11 H -0.165 1.165 12 H -0.167 1.167 13 C -0.105 4.105 14 H 0.106 0.894 15 C -0.140 4.140 16 C -0.108 4.108 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.102 4.102 20 C -0.157 4.157 21 C -0.153 4.153 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.054 -0.600 1.204 1.346 hybrid contribution 0.341 -0.140 -0.639 0.738 sum 0.395 -0.740 0.565 1.011 Atomic orbital electron populations 1.26964 1.24879 1.04467 1.04604 0.77267 0.63752 0.64187 0.55744 1.26336 1.06819 1.19574 1.04714 1.27199 1.06227 1.10734 1.17901 1.85400 1.79377 1.25917 1.66252 1.20784 0.94804 0.78869 0.95920 1.30910 1.06418 0.94971 0.95580 1.68107 1.39430 1.06653 1.08320 0.85782 0.75373 0.82151 0.83137 1.14226 1.16534 1.16676 1.21375 1.00849 0.94961 0.93270 0.89423 1.21504 0.95233 0.97079 1.00172 1.21079 0.97171 0.96644 0.95907 1.21548 0.98541 0.97481 0.97614 1.21534 0.99534 0.99501 0.94531 1.21047 0.97462 0.95128 0.96561 1.21616 0.94408 0.99990 0.99662 1.21548 0.97703 0.98523 0.97516 0.90992 0.90884 0.91254 0.90881 0.90628 0.90787 0.89005 0.91386 0.91804 0.89676 0.84296 0.91291 0.91124 0.91050 0.92028 0.91868 0.91719 0.91818 0.91321 0.91300 0.91859 0.91990 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.17 8.56 101.05 0.87 1.03 16 2 Si 1.25 -0.79 12.68 -169.99 -2.16 -2.94 16 3 C -0.47 0.11 8.65 101.05 0.87 0.99 16 4 C -0.52 -0.33 7.98 101.05 0.81 0.48 16 5 O -0.61 -0.23 7.43 -35.23 -0.26 -0.49 16 6 C 0.15 0.03 0.85 -27.88 -0.02 0.00 16 7 C -0.03 -0.01 3.07 -13.90 -0.04 -0.05 16 8 N -0.61 -0.16 11.40 56.23 0.64 0.48 16 9 Si 0.92 0.12 26.92 -169.99 -4.58 -4.46 16 10 H -0.22 -0.06 6.43 56.52 0.36 0.31 16 11 H -0.24 -0.03 7.11 56.52 0.40 0.37 16 12 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 13 C -0.09 0.02 1.54 -90.62 -0.14 -0.12 16 14 H 0.09 -0.02 6.09 -51.93 -0.32 -0.34 16 15 C -0.10 0.05 5.13 -26.73 -0.14 -0.09 16 16 C -0.09 0.06 3.19 -90.65 -0.29 -0.23 16 17 C -0.11 0.09 5.71 -26.73 -0.15 -0.06 16 18 C -0.11 0.09 5.71 -26.73 -0.15 -0.06 16 19 C -0.08 0.04 2.42 -90.62 -0.22 -0.18 16 20 C -0.12 0.05 5.36 -26.73 -0.14 -0.09 16 21 C -0.12 0.07 5.71 -26.76 -0.15 -0.09 16 22 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 23 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 24 H 0.07 -0.01 7.10 -51.93 -0.37 -0.38 16 25 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 26 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 27 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 28 H 0.09 0.12 5.48 -51.93 -0.28 -0.17 16 29 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 30 H 0.06 0.06 7.96 -51.93 -0.41 -0.36 16 31 H 0.09 -0.02 4.41 -51.93 -0.23 -0.25 16 32 H 0.34 -0.41 8.23 -40.82 -0.34 -0.75 16 33 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 34 H 0.07 -0.03 7.30 -51.93 -0.38 -0.41 16 35 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 36 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 40 H 0.07 -0.05 6.52 -51.93 -0.34 -0.38 16 41 H 0.07 -0.01 6.43 -51.93 -0.33 -0.34 16 42 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 43 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 44 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 LS Contribution 323.55 15.07 4.88 4.88 Total: 0.00 -1.84 323.55 -8.50 -10.35 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -8.12 Total: -9.35 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 1.09 Total: 1.54 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: 0.64 Total: 0.48 kcal Atomic # 8 Polarization: -0.23 SS G_CDS: -0.26 Total: -0.49 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -6.73 Total: -7.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -1.84 -8.50 -10.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701177126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.553 kcal (2) G-P(sol) polarization free energy of solvation -1.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds