Wall clock time and date at job start Mon Mar 30 2020 07:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86308 * 109.47028 * 2 1 4 4 C 1.86296 * 109.47183 * 240.00306 * 2 1 3 5 5 O 1.63099 * 109.47051 * 119.99690 * 2 1 3 6 6 C 1.42898 * 113.99618 * 60.00398 * 5 2 1 7 7 C 1.50703 * 109.47171 * 89.99737 * 6 5 2 8 8 N 1.27946 * 120.00096 * 249.99525 * 7 6 5 9 9 Si 1.86798 * 119.99984 * 70.00122 * 7 6 5 10 10 H 1.48499 * 109.47092 * 359.97438 * 9 7 6 11 11 H 1.48501 * 109.47484 * 120.00007 * 9 7 6 12 12 H 1.48504 * 109.46852 * 239.99981 * 9 7 6 13 13 C 1.53002 * 109.47113 * 209.99571 * 6 5 2 14 14 H 1.09002 * 109.47070 * 300.00130 * 13 6 5 15 15 C 1.52997 * 109.46817 * 59.99950 * 13 6 5 16 16 C 1.53007 * 109.47165 * 120.00246 * 15 13 6 17 17 C 1.52998 * 109.47103 * 59.99525 * 16 15 13 18 18 C 1.52997 * 109.47498 * 300.00271 * 17 16 15 19 19 C 1.53000 * 109.47233 * 179.97438 * 13 6 5 20 20 C 1.52996 * 109.47328 * 300.00469 * 19 13 6 21 21 C 1.53002 * 109.46891 * 299.99597 * 20 19 13 22 22 H 1.08996 * 109.47415 * 300.00008 * 1 2 3 23 23 H 1.09004 * 109.47545 * 60.00133 * 1 2 3 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46741 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46849 * 300.00293 * 3 2 1 27 27 H 1.09002 * 109.46659 * 59.99861 * 3 2 1 28 28 H 1.09001 * 109.47003 * 299.99818 * 4 2 1 29 29 H 1.08997 * 109.47280 * 59.99809 * 4 2 1 30 30 H 1.09004 * 109.47191 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47711 * 329.99869 * 6 5 2 32 32 H 0.96993 * 120.00047 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47508 * 239.99895 * 15 13 6 34 34 H 1.08998 * 109.47420 * 0.02562 * 15 13 6 35 35 H 1.09000 * 109.47257 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.47174 * 180.02562 * 17 16 15 37 37 H 1.09000 * 109.46837 * 60.00799 * 17 16 15 38 38 H 1.08993 * 109.47194 * 239.99494 * 18 17 16 39 39 H 1.09002 * 109.46695 * 119.99508 * 18 17 16 40 40 H 1.09004 * 109.46724 * 60.00652 * 19 13 6 41 41 H 1.08992 * 109.47554 * 59.99639 * 20 19 13 42 42 H 1.09004 * 109.47108 * 179.97438 * 20 19 13 43 43 H 1.08998 * 109.47214 * 240.00229 * 21 20 19 44 44 H 1.08999 * 109.46656 * 120.00077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5211 5 8 2.4066 -0.7688 1.3317 6 6 1.9850 -2.1307 1.4294 7 6 2.9969 -3.0195 0.7533 8 7 2.7012 -3.6055 -0.3450 9 14 4.6829 -3.2660 1.5189 10 1 4.7739 -2.4839 2.7779 11 1 4.8864 -4.7069 1.8148 12 1 5.7289 -2.8025 0.5721 13 6 1.8656 -2.5231 2.9034 14 1 2.8340 -2.4068 3.3900 15 6 0.8383 -1.6207 3.5897 16 6 -0.2981 -2.4772 4.1520 17 6 0.2673 -3.4713 5.1683 18 6 1.2946 -4.3737 4.4820 19 6 1.4135 -3.9811 3.0080 20 6 0.0541 -4.1438 2.3251 21 6 -0.9728 -3.2410 3.0117 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5739 1.7565 -0.0005 26 1 2.1206 2.2704 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9058 -1.5212 29 1 2.1207 -0.3643 -2.4111 30 1 3.5740 -0.8785 -1.5209 31 1 1.0166 -2.2471 0.9428 32 1 3.3526 -4.1773 -0.7803 33 1 1.3187 -1.0757 4.4024 34 1 0.4351 -0.9128 2.8656 35 1 -1.0298 -1.8343 4.6414 36 1 -0.5421 -4.0817 5.5685 37 1 0.7478 -2.9263 5.9810 38 1 0.9731 -5.4124 4.5566 39 1 2.2630 -4.2573 4.9686 40 1 2.1452 -4.6242 2.5189 41 1 0.1392 -3.8642 1.2751 42 1 -0.2677 -5.1826 2.3992 43 1 -1.7825 -3.8509 3.4122 44 1 -1.3754 -2.5327 2.2876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701177126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:50 Heat of formation + Delta-G solvation = -70.469060 kcal Electronic energy + Delta-G solvation = -20962.089274 eV Core-core repulsion = 18229.994967 eV Total energy + Delta-G solvation = -2732.094307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74759 -38.53521 -35.85695 -32.75958 -31.97140 -31.67846 -29.47513 -28.50300 -28.32243 -27.26120 -23.42194 -23.00594 -22.80301 -20.91516 -18.77924 -17.43630 -17.27738 -16.94376 -16.63436 -16.15664 -15.91351 -14.76318 -14.58252 -14.24630 -14.05312 -13.75347 -13.65896 -13.45567 -13.23746 -13.14077 -13.11635 -13.01066 -12.90534 -12.88945 -12.81579 -12.78760 -12.56119 -12.53984 -12.12799 -12.05987 -11.69611 -11.59157 -11.20445 -10.72524 -10.64144 -10.59405 -10.52305 -10.39131 -9.83432 0.60815 1.04106 1.40234 1.48232 1.73691 1.86864 1.97919 2.12176 2.56285 3.38859 3.67784 3.69917 3.82462 4.21649 4.24073 4.32572 4.45094 4.51184 4.53900 4.55063 4.60022 4.62292 4.73481 4.76461 4.76687 4.78068 4.79887 4.81389 4.83130 4.84309 4.95745 5.03231 5.21455 5.24277 5.29926 5.35697 5.43031 5.49217 5.51920 5.53136 5.55748 5.62306 5.64340 5.68155 5.71384 6.77426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.512 4.512 2 Si 1.284 2.716 3 C -0.477 4.477 4 C -0.528 4.528 5 O -0.619 6.619 6 C 0.149 3.851 7 C -0.030 4.030 8 N -0.617 5.617 9 Si 0.932 3.068 10 H -0.221 1.221 11 H -0.241 1.241 12 H -0.256 1.256 13 C -0.087 4.087 14 H 0.088 0.912 15 C -0.104 4.104 16 C -0.089 4.089 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.084 4.084 20 C -0.119 4.119 21 C -0.115 4.115 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.347 0.653 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 -0.414 1.486 1.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.614 4.614 2 Si 1.419 2.581 3 C -0.582 4.582 4 C -0.629 4.629 5 O -0.576 6.576 6 C 0.092 3.908 7 C -0.280 4.280 8 N -0.233 5.233 9 Si 0.748 3.252 10 H -0.143 1.143 11 H -0.164 1.164 12 H -0.180 1.180 13 C -0.106 4.106 14 H 0.106 0.894 15 C -0.141 4.141 16 C -0.107 4.107 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.103 4.103 20 C -0.156 4.156 21 C -0.153 4.153 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.134 -0.547 1.485 1.588 hybrid contribution 0.409 -0.162 -0.758 0.876 sum 0.275 -0.709 0.727 1.052 Atomic orbital electron populations 1.27011 1.25077 1.04441 1.04838 0.76743 0.63250 0.63477 0.54632 1.26419 1.06756 1.19984 1.05080 1.27346 1.05975 1.10646 1.18938 1.85395 1.79564 1.26058 1.66613 1.20863 0.94919 0.78795 0.96238 1.30937 1.06455 0.95005 0.95566 1.68095 1.39930 1.06869 1.08399 0.85613 0.74881 0.82050 0.82656 1.14296 1.16422 1.17979 1.21395 1.00958 0.95191 0.93046 0.89429 1.21519 0.95264 0.97099 1.00218 1.21076 0.97124 0.96660 0.95877 1.21548 0.98547 0.97455 0.97608 1.21549 0.99749 0.99582 0.94307 1.21056 0.97397 0.94992 0.96808 1.21604 0.94561 0.99992 0.99453 1.21549 0.97674 0.98508 0.97563 0.90709 0.90711 0.91417 0.91095 0.90126 0.90601 0.89615 0.91280 0.92283 0.89389 0.83542 0.91151 0.91108 0.90844 0.92009 0.91688 0.91586 0.91496 0.91228 0.91704 0.91892 0.91946 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.41 8.56 113.37 0.97 1.38 16 2 Si 1.28 -1.50 12.68 68.60 0.87 -0.63 16 3 C -0.48 0.27 8.65 113.37 0.98 1.25 16 4 C -0.53 -0.89 7.98 113.37 0.90 0.01 16 5 O -0.62 -0.50 7.43 -148.98 -1.11 -1.60 16 6 C 0.15 0.07 0.85 29.85 0.03 0.09 16 7 C -0.03 -0.02 3.07 88.68 0.27 0.25 16 8 N -0.62 -0.53 11.40 24.11 0.27 -0.25 16 9 Si 0.93 0.48 26.92 68.60 1.85 2.32 16 10 H -0.22 -0.12 6.43 99.48 0.64 0.52 16 11 H -0.24 -0.06 7.11 99.48 0.71 0.65 16 12 H -0.26 -0.62 7.11 99.48 0.71 0.09 16 13 C -0.09 0.04 1.54 -10.79 -0.02 0.02 16 14 H 0.09 -0.04 6.09 -2.39 -0.01 -0.06 16 15 C -0.10 0.11 5.13 30.60 0.16 0.26 16 16 C -0.09 0.14 3.19 -10.81 -0.03 0.11 16 17 C -0.11 0.22 5.71 30.59 0.17 0.39 16 18 C -0.11 0.21 5.71 30.59 0.17 0.39 16 19 C -0.08 0.09 2.42 -10.79 -0.03 0.06 16 20 C -0.12 0.09 5.36 30.59 0.16 0.26 16 21 C -0.12 0.14 5.71 30.57 0.17 0.31 16 22 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 23 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 24 H 0.07 -0.02 7.10 -2.39 -0.02 -0.04 16 25 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 26 H 0.08 -0.13 7.96 -2.39 -0.02 -0.15 16 27 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 28 H 0.08 0.26 5.48 -2.39 -0.01 0.25 16 29 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 30 H 0.06 0.15 7.96 -2.38 -0.02 0.13 16 31 H 0.09 -0.03 4.41 -2.39 -0.01 -0.04 16 32 H 0.35 -0.70 8.23 -92.71 -0.76 -1.46 16 33 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.07 -0.08 7.30 -2.39 -0.02 -0.10 16 35 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.18 16 40 H 0.07 -0.09 6.52 -2.39 -0.02 -0.11 16 41 H 0.06 0.00 6.43 -2.39 -0.02 -0.01 16 42 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 43 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -3.83 323.55 6.69 2.85 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: 0.88 Total: -1.78 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 3.92 Total: 4.79 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: 0.27 Total: -0.25 kcal Atomic # 8 Polarization: -0.50 SS G_CDS: -1.11 Total: -1.60 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.72 Total: 1.70 kcal Total: -3.83 6.69 2.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701177126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.321 kcal (2) G-P(sol) polarization free energy of solvation -3.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 2.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds