Wall clock time and date at job start Mon Mar 30 2020 07:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 O 1.63100 * 109.47360 * 239.99744 * 2 1 3 6 6 C 1.42899 * 113.99854 * 59.99973 * 5 2 1 7 7 C 1.50705 * 109.47208 * 90.00242 * 6 5 2 8 8 N 1.27940 * 119.99967 * 250.00144 * 7 6 5 9 9 Si 1.86798 * 119.99895 * 69.99409 * 7 6 5 10 10 H 1.48501 * 109.46750 * 90.00259 * 9 7 6 11 11 H 1.48504 * 109.47162 * 210.00153 * 9 7 6 12 12 H 1.48499 * 109.47487 * 330.00623 * 9 7 6 13 13 C 1.52999 * 109.46787 * 209.99999 * 6 5 2 14 14 H 1.09001 * 109.47343 * 300.00242 * 13 6 5 15 15 C 1.53005 * 109.46802 * 180.02562 * 13 6 5 16 16 C 1.53000 * 109.46886 * 239.99725 * 15 13 6 17 17 C 1.53001 * 109.46959 * 60.00617 * 16 15 13 18 18 C 1.53005 * 109.46818 * 299.99425 * 17 16 15 19 19 C 1.52998 * 109.47378 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.47158 * 300.00409 * 19 18 17 21 21 C 1.53000 * 109.47598 * 300.00045 * 16 15 13 22 22 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 23 23 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 25 25 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 26 26 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 28 28 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 29 29 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 31 31 H 1.08997 * 109.47222 * 329.99751 * 6 5 2 32 32 H 0.96992 * 120.00062 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47283 * 0.02562 * 15 13 6 34 34 H 1.09000 * 109.46923 * 120.00038 * 15 13 6 35 35 H 1.09003 * 109.46777 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47186 * 59.99476 * 17 16 15 37 37 H 1.09006 * 109.46828 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.46865 * 240.00232 * 18 17 16 39 39 H 1.09002 * 109.46763 * 120.00063 * 18 17 16 40 40 H 1.08993 * 109.47568 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.46635 * 299.99174 * 20 19 18 42 42 H 1.09001 * 109.47218 * 179.97438 * 20 19 18 43 43 H 1.08990 * 109.47312 * 179.97438 * 21 16 15 44 44 H 1.09000 * 109.47201 * 300.00294 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 8 2.4067 -0.7689 -1.3316 6 6 1.9851 -0.1726 -2.5599 7 6 2.9970 0.8573 -2.9918 8 7 2.7013 2.1014 -2.9501 9 14 4.6830 0.3175 -3.5878 10 1 4.6434 0.1027 -5.0566 11 1 5.6813 1.3695 -3.2680 12 1 5.0648 -0.9488 -2.9125 13 6 1.8657 -1.2531 -3.6367 14 1 2.8341 -1.7326 -3.7792 15 6 1.4149 -0.6145 -4.9520 16 6 0.0866 -1.2343 -5.3907 17 6 -0.9721 -0.9863 -4.3143 18 6 -0.5212 -1.6248 -2.9990 19 6 0.8382 -2.2979 -3.1984 20 6 0.7194 -3.3781 -4.2754 21 6 0.2677 -2.7403 -5.5907 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 2.1207 2.2704 0.8899 26 1 3.5740 1.7565 0.0005 27 1 2.1207 2.2703 -0.8901 28 1 2.1207 -1.9058 1.5213 29 1 3.5740 -0.8777 1.5215 30 1 2.1207 -0.3642 2.4111 31 1 1.0167 0.3068 -2.4174 32 1 3.3524 2.7642 -3.2283 33 1 1.2862 0.4584 -4.8097 34 1 2.1691 -0.7911 -5.7188 35 1 -0.2344 -0.7797 -6.3280 36 1 -1.1011 0.0866 -4.1719 37 1 -1.9185 -1.4274 -4.6271 38 1 -1.2535 -2.3695 -2.6869 39 1 -0.4361 -0.8551 -2.2319 40 1 1.1596 -2.7524 -2.2613 41 1 -0.0125 -4.1231 -3.9634 42 1 1.6881 -3.8573 -4.4178 43 1 -0.6786 -3.1818 -5.9028 44 1 1.0219 -2.9169 -6.3576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701177129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:55 Heat of formation + Delta-G solvation = -83.982679 kcal Electronic energy + Delta-G solvation = -21000.089618 eV Core-core repulsion = 18267.409317 eV Total energy + Delta-G solvation = -2732.680301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77780 -38.53855 -35.84755 -32.69269 -32.20485 -31.76862 -29.48818 -28.55946 -28.30813 -27.14768 -23.47620 -23.41389 -22.44942 -20.96165 -18.74462 -17.39579 -17.24987 -17.02649 -16.74360 -16.41490 -15.70387 -14.81124 -14.56660 -14.27087 -14.05577 -13.81931 -13.69967 -13.38668 -13.33278 -13.16390 -13.10227 -12.96542 -12.91768 -12.89910 -12.86811 -12.75071 -12.59547 -12.53182 -12.22536 -12.04685 -11.74268 -11.50370 -11.26306 -10.73871 -10.67060 -10.62820 -10.60716 -10.36032 -9.83684 0.62355 1.06257 1.41323 1.48122 1.74644 1.91478 1.94186 2.09232 2.55156 3.33733 3.61730 3.69434 3.79809 4.18210 4.20971 4.34971 4.39397 4.42936 4.44961 4.50590 4.56431 4.56852 4.65954 4.73939 4.74690 4.76592 4.78402 4.80868 4.82161 4.85245 4.97204 5.01701 5.16707 5.17614 5.25249 5.28058 5.39642 5.44206 5.45143 5.49788 5.51447 5.57339 5.61992 5.69798 5.75802 6.73793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.509 4.509 2 Si 1.252 2.748 3 C -0.519 4.519 4 C -0.468 4.468 5 O -0.611 6.611 6 C 0.154 3.846 7 C -0.028 4.028 8 N -0.611 5.611 9 Si 0.918 3.082 10 H -0.235 1.235 11 H -0.249 1.249 12 H -0.220 1.220 13 C -0.081 4.081 14 H 0.083 0.917 15 C -0.118 4.118 16 C -0.084 4.084 17 C -0.116 4.116 18 C -0.128 4.128 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.115 4.115 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.340 0.660 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -0.794 -0.927 1.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.610 4.610 2 Si 1.389 2.611 3 C -0.621 4.621 4 C -0.574 4.574 5 O -0.568 6.568 6 C 0.096 3.904 7 C -0.278 4.278 8 N -0.227 5.227 9 Si 0.733 3.267 10 H -0.158 1.158 11 H -0.173 1.173 12 H -0.142 1.142 13 C -0.100 4.100 14 H 0.101 0.899 15 C -0.156 4.156 16 C -0.103 4.103 17 C -0.154 4.154 18 C -0.165 4.165 19 C -0.095 4.095 20 C -0.152 4.152 21 C -0.153 4.153 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.083 -0.738 -1.035 1.274 hybrid contribution 0.327 0.614 0.180 0.718 sum 0.410 -0.124 -0.855 0.956 Atomic orbital electron populations 1.27052 1.24854 1.04620 1.04509 0.77285 0.63814 0.61792 0.58209 1.27204 1.06220 1.22949 1.05700 1.26333 1.06814 1.08667 1.15606 1.85413 1.79342 1.66184 1.25895 1.20828 0.94754 0.90507 0.84264 1.30911 1.06404 0.95614 0.94868 1.68112 1.39597 1.03971 1.11007 0.85829 0.75094 0.83562 0.82199 1.15801 1.17275 1.14184 1.21265 1.00234 0.95269 0.93216 0.89866 1.21692 0.97425 1.00251 0.96183 1.21005 0.94984 0.95875 0.98413 1.21562 0.98085 1.00620 0.95084 1.21794 0.96668 1.00363 0.97718 1.20947 0.94299 0.95035 0.99172 1.21555 1.01460 0.97368 0.94856 1.21565 1.01299 0.94943 0.97495 0.91097 0.90796 0.90834 0.91383 0.91808 0.89016 0.90785 0.90889 0.90633 0.89719 0.84232 0.91154 0.91359 0.91107 0.92042 0.91978 0.91819 0.91097 0.89744 0.91825 0.91844 0.92009 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.26 7.34 101.05 0.74 1.00 16 2 Si 1.25 -0.86 12.68 -169.99 -2.16 -3.02 16 3 C -0.52 -0.32 7.98 101.05 0.81 0.49 16 4 C -0.47 0.13 8.65 101.05 0.87 1.01 16 5 O -0.61 -0.19 7.38 -35.23 -0.26 -0.45 16 6 C 0.15 0.02 0.91 -27.88 -0.03 0.00 16 7 C -0.03 -0.01 2.97 -13.90 -0.04 -0.05 16 8 N -0.61 -0.22 11.40 56.23 0.64 0.42 16 9 Si 0.92 0.09 27.15 -169.99 -4.61 -4.52 16 10 H -0.23 0.02 7.11 56.52 0.40 0.42 16 11 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 12 H -0.22 -0.14 7.11 56.52 0.40 0.26 16 13 C -0.08 0.02 1.54 -90.64 -0.14 -0.12 16 14 H 0.08 -0.04 6.51 -51.93 -0.34 -0.38 16 15 C -0.12 0.07 4.70 -26.73 -0.13 -0.06 16 16 C -0.08 0.05 3.19 -90.62 -0.29 -0.24 16 17 C -0.12 0.06 5.71 -26.73 -0.15 -0.10 16 18 C -0.13 0.06 5.36 -26.73 -0.14 -0.08 16 19 C -0.08 0.03 2.58 -90.64 -0.23 -0.20 16 20 C -0.11 0.08 5.71 -26.73 -0.15 -0.07 16 21 C -0.12 0.09 5.71 -26.73 -0.15 -0.07 16 22 H 0.07 -0.02 6.07 -51.93 -0.32 -0.34 16 23 H 0.07 -0.05 7.82 -51.93 -0.41 -0.46 16 24 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 25 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 26 H 0.06 0.05 7.96 -51.93 -0.41 -0.36 16 27 H 0.09 0.12 5.48 -51.93 -0.28 -0.17 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 29 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 31 H 0.09 -0.02 4.56 -51.93 -0.24 -0.26 16 32 H 0.34 -0.36 8.23 -40.82 -0.34 -0.69 16 33 H 0.07 -0.03 6.98 -51.93 -0.36 -0.39 16 34 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 37 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 38 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 39 H 0.07 -0.04 3.68 -51.93 -0.19 -0.23 16 40 H 0.08 -0.02 7.68 -51.93 -0.40 -0.42 16 41 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 42 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 43 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 44 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 LS Contribution 320.34 15.07 4.83 4.83 Total: 0.00 -1.84 320.34 -8.55 -10.39 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -7.95 Total: -9.17 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 0.97 Total: 1.52 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: 0.64 Total: 0.42 kcal Atomic # 8 Polarization: -0.19 SS G_CDS: -0.26 Total: -0.45 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -6.77 Total: -7.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -1.84 -8.55 -10.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701177129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.595 kcal (2) G-P(sol) polarization free energy of solvation -1.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds