Wall clock time and date at job start Mon Mar 30 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46891 * 111.00101 * 2 1 4 4 C 1.52999 * 109.47192 * 66.04430 * 3 2 1 5 5 C 1.53000 * 109.47302 * 179.97438 * 4 3 2 6 6 S 1.81006 * 109.47296 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00078 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99994 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00019 * 180.02562 * 7 6 5 10 10 N 1.31635 * 119.99911 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99972 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47295 * 59.99943 * 11 9 7 13 13 H 1.48500 * 109.46984 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47076 * 299.99879 * 11 9 7 15 15 C 1.46904 * 110.99750 * 236.04388 * 2 1 3 16 16 C 1.50694 * 109.47331 * 293.95502 * 15 2 1 17 17 C 1.34858 * 125.88994 * 95.20142 * 16 15 2 18 18 C 1.40892 * 107.41686 * 180.25251 * 17 16 15 19 19 C 1.34851 * 107.41480 * 359.73710 * 18 17 16 20 20 N 1.36343 * 125.89186 * 275.00342 * 16 15 2 21 21 C 1.46499 * 125.63539 * 359.97438 * 20 16 15 22 22 H 1.08997 * 109.47659 * 183.95368 * 1 2 3 23 23 H 1.08999 * 109.46956 * 303.95582 * 1 2 3 24 24 H 1.09002 * 109.46850 * 63.95299 * 1 2 3 25 25 H 1.09002 * 109.47021 * 186.04700 * 3 2 1 26 26 H 1.09003 * 109.47553 * 306.04569 * 3 2 1 27 27 H 1.09002 * 109.47358 * 300.00063 * 4 3 2 28 28 H 1.09005 * 109.47056 * 60.00090 * 4 3 2 29 29 H 1.08994 * 109.47395 * 300.00227 * 5 4 3 30 30 H 1.09004 * 109.46578 * 60.00816 * 5 4 3 31 31 H 0.97006 * 119.99930 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.46849 * 173.95714 * 15 2 1 33 33 H 1.08999 * 109.47040 * 53.96017 * 15 2 1 34 34 H 1.08001 * 126.28962 * 359.97438 * 17 16 15 35 35 H 1.07993 * 126.29420 * 179.73505 * 18 17 16 36 36 H 1.08001 * 125.89119 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47391 * 269.72164 * 21 20 16 38 38 H 1.09001 * 109.46813 * 149.72220 * 21 20 16 39 39 H 1.09004 * 109.47041 * 29.72347 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1803 3.4855 1.3185 6 16 1.7490 4.2974 2.8777 7 6 2.4819 5.8777 2.6128 8 1 3.0011 6.0841 1.6885 9 6 2.3920 6.8573 3.5920 10 7 1.7588 6.6059 4.7183 11 14 3.1684 8.5329 3.3108 12 1 2.5598 9.1658 2.1133 13 1 2.9329 9.3930 4.4982 14 1 4.6291 8.3721 3.0973 15 6 1.9954 -0.7661 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 6 0.5665 -2.8370 -1.5139 18 6 0.6059 -4.1852 -1.1066 19 6 1.7020 -4.3424 -0.3371 20 7 2.3408 -3.1408 -0.2542 21 6 3.5762 -2.8802 0.4887 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3443 -0.1083 26 1 1.5612 1.9273 -0.8309 27 1 0.5471 2.0844 1.4265 28 1 2.0658 1.5015 2.1492 29 1 3.2645 3.4581 1.2105 30 1 1.7462 4.0417 0.4876 31 1 1.6963 7.2904 5.4028 32 1 3.0797 -0.6612 -1.1756 33 1 1.5611 -0.3873 -2.0628 34 1 -0.1855 -2.3801 -2.1402 35 1 -0.1101 -4.9517 -1.3635 36 1 2.0194 -5.2618 0.1324 37 1 4.4342 -3.0514 -0.1615 38 1 3.6318 -3.5494 1.3473 39 1 3.5819 -1.8460 0.8331 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701664143.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:58 Heat of formation + Delta-G solvation = 42.611721 kcal Electronic energy + Delta-G solvation = -17594.242158 eV Core-core repulsion = 14856.713222 eV Total energy + Delta-G solvation = -2737.528937 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30245 -37.68634 -33.12282 -32.89265 -32.41339 -29.93482 -27.16643 -26.42933 -26.03934 -25.35888 -22.57278 -20.70056 -20.49279 -19.17590 -17.46653 -16.95978 -15.99588 -15.57178 -15.02470 -14.79762 -14.55656 -14.31121 -13.95958 -13.55076 -13.34050 -12.85090 -12.64132 -12.47881 -12.39017 -12.13703 -12.02429 -11.78396 -11.59619 -11.30636 -11.25446 -11.04431 -10.78262 -10.63128 -10.26788 -9.54107 -9.04527 -8.65233 -8.43174 -8.29324 -8.04861 -6.51791 -6.21882 -3.92143 2.12853 2.90064 2.93367 3.22012 3.23350 3.28035 3.56625 4.08759 4.23727 4.66668 4.71417 4.99113 5.02478 5.09044 5.13783 5.18502 5.27285 5.35861 5.38087 5.49176 5.54443 5.57937 5.62650 5.71910 5.76435 5.90192 6.03825 6.09623 6.20255 6.25398 6.36898 6.59683 6.75714 6.91457 7.04745 7.05683 7.19793 7.31745 7.60791 8.37065 9.24141 10.86244 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.047523 B = 0.002886 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.048893 B = 9699.748661 C = 9784.358567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.059 3.941 4 C -0.093 4.093 5 C -0.113 4.113 6 S -0.132 6.132 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.120 3.880 16 C 0.031 3.969 17 C -0.198 4.198 18 C -0.203 4.203 19 C -0.019 4.019 20 N -0.437 5.437 21 C 0.071 3.929 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.268 0.732 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -19.227 -11.384 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.070 4.070 4 C -0.132 4.132 5 C -0.262 4.262 6 S 0.096 5.904 7 C -0.665 4.665 8 H 0.089 0.911 9 C -0.138 4.138 10 N -0.506 5.506 11 Si 0.745 3.255 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.199 1.199 15 C -0.008 4.008 16 C -0.081 4.081 17 C -0.223 4.223 18 C -0.227 4.227 19 C -0.149 4.149 20 N -0.113 5.113 21 C -0.071 4.071 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.942 -19.682 -9.670 21.950 hybrid contribution 0.892 1.868 -1.885 2.800 sum 1.834 -17.814 -11.555 21.312 Atomic orbital electron populations 1.22473 0.86954 1.02544 1.00766 1.62009 1.08681 1.13927 1.41714 1.22215 0.99740 0.87000 0.98018 1.21276 1.01396 0.93971 0.96508 1.23235 1.02211 0.97551 1.03185 1.84641 1.74349 1.13256 1.18149 1.22651 1.40584 0.97571 1.05701 0.91051 1.25015 0.95233 0.99012 0.94540 1.70019 1.39968 1.34451 1.06116 0.86227 0.79565 0.81917 0.77836 1.19958 1.20813 1.19950 1.20505 1.00073 0.87436 0.92798 1.20123 0.95825 0.91364 1.00827 1.20660 0.99775 0.94717 1.07180 1.20816 0.99990 0.97080 1.04847 1.21761 0.96920 0.89417 1.06799 1.43874 1.20473 1.08242 1.38668 1.22036 0.84384 1.04455 0.96239 0.91011 0.90740 0.95756 0.91025 0.94778 0.91534 0.90917 0.92199 0.92348 0.92261 0.90455 0.92724 0.85189 0.85009 0.82442 0.91389 0.90089 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.12 60.07 0.55 0.80 16 2 N -0.54 -6.70 4.75 -244.38 -1.16 -7.87 16 3 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 4 C -0.09 -1.53 5.15 -26.73 -0.14 -1.66 16 5 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 6 S -0.13 -3.49 21.44 -107.50 -2.30 -5.79 16 7 C -0.52 -14.91 9.50 30.94 0.29 -14.62 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 10 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 11 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 C 0.12 1.30 4.87 -4.98 -0.02 1.28 16 16 C 0.03 0.36 5.63 -81.79 -0.46 -0.10 16 17 C -0.20 -2.27 9.74 -39.78 -0.39 -2.65 16 18 C -0.20 -2.17 10.86 -39.78 -0.43 -2.61 16 19 C -0.02 -0.19 11.43 -16.75 -0.19 -0.38 16 20 N -0.44 -4.62 3.15 -119.90 -0.38 -5.00 16 21 C 0.07 0.56 10.80 59.85 0.65 1.20 16 22 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 23 H 0.07 0.96 6.30 -51.93 -0.33 0.63 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 26 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.07 1.12 6.47 -51.93 -0.34 0.78 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 33 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.82 7.73 -51.93 -0.40 0.41 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -32.07 334.75 -9.55 -41.62 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.41 Total: -1.07 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.10 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.81 Total: -38.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.07 -9.55 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701664143.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.230 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds