Wall clock time and date at job start Mon Mar 30 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46891 * 111.00101 * 2 1 4 4 C 1.52999 * 109.47192 * 66.04430 * 3 2 1 5 5 C 1.53000 * 109.47302 * 179.97438 * 4 3 2 6 6 S 1.81006 * 109.47296 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00078 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99994 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00019 * 180.02562 * 7 6 5 10 10 N 1.31635 * 119.99911 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99972 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47295 * 59.99943 * 11 9 7 13 13 H 1.48500 * 109.46984 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47076 * 299.99879 * 11 9 7 15 15 C 1.46904 * 110.99750 * 236.04388 * 2 1 3 16 16 C 1.50694 * 109.47331 * 293.95502 * 15 2 1 17 17 C 1.34858 * 125.88994 * 95.20142 * 16 15 2 18 18 C 1.40892 * 107.41686 * 180.25251 * 17 16 15 19 19 C 1.34851 * 107.41480 * 359.73710 * 18 17 16 20 20 N 1.36343 * 125.89186 * 275.00342 * 16 15 2 21 21 C 1.46499 * 125.63539 * 359.97438 * 20 16 15 22 22 H 1.08997 * 109.47659 * 183.95368 * 1 2 3 23 23 H 1.08999 * 109.46956 * 303.95582 * 1 2 3 24 24 H 1.09002 * 109.46850 * 63.95299 * 1 2 3 25 25 H 1.09002 * 109.47021 * 186.04700 * 3 2 1 26 26 H 1.09003 * 109.47553 * 306.04569 * 3 2 1 27 27 H 1.09002 * 109.47358 * 300.00063 * 4 3 2 28 28 H 1.09005 * 109.47056 * 60.00090 * 4 3 2 29 29 H 1.08994 * 109.47395 * 300.00227 * 5 4 3 30 30 H 1.09004 * 109.46578 * 60.00816 * 5 4 3 31 31 H 0.97006 * 119.99930 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.46849 * 173.95714 * 15 2 1 33 33 H 1.08999 * 109.47040 * 53.96017 * 15 2 1 34 34 H 1.08001 * 126.28962 * 359.97438 * 17 16 15 35 35 H 1.07993 * 126.29420 * 179.73505 * 18 17 16 36 36 H 1.08001 * 125.89119 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47391 * 269.72164 * 21 20 16 38 38 H 1.09001 * 109.46813 * 149.72220 * 21 20 16 39 39 H 1.09004 * 109.47041 * 29.72347 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1803 3.4855 1.3185 6 16 1.7490 4.2974 2.8777 7 6 2.4819 5.8777 2.6128 8 1 3.0011 6.0841 1.6885 9 6 2.3920 6.8573 3.5920 10 7 1.7588 6.6059 4.7183 11 14 3.1684 8.5329 3.3108 12 1 2.5598 9.1658 2.1133 13 1 2.9329 9.3930 4.4982 14 1 4.6291 8.3721 3.0973 15 6 1.9954 -0.7661 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 6 0.5665 -2.8370 -1.5139 18 6 0.6059 -4.1852 -1.1066 19 6 1.7020 -4.3424 -0.3371 20 7 2.3408 -3.1408 -0.2542 21 6 3.5762 -2.8802 0.4887 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3443 -0.1083 26 1 1.5612 1.9273 -0.8309 27 1 0.5471 2.0844 1.4265 28 1 2.0658 1.5015 2.1492 29 1 3.2645 3.4581 1.2105 30 1 1.7462 4.0417 0.4876 31 1 1.6963 7.2904 5.4028 32 1 3.0797 -0.6612 -1.1756 33 1 1.5611 -0.3873 -2.0628 34 1 -0.1855 -2.3801 -2.1402 35 1 -0.1101 -4.9517 -1.3635 36 1 2.0194 -5.2618 0.1324 37 1 4.4342 -3.0514 -0.1615 38 1 3.6318 -3.5494 1.3473 39 1 3.5819 -1.8460 0.8331 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701664143.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:58 Heat of formation + Delta-G solvation = 23.851379 kcal Electronic energy + Delta-G solvation = -17595.055668 eV Core-core repulsion = 14856.713222 eV Total energy + Delta-G solvation = -2738.342446 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07118 -38.71485 -34.63641 -34.36452 -33.61993 -30.87461 -28.24221 -27.80951 -27.10356 -26.81654 -23.76066 -21.79760 -21.38247 -19.97075 -19.54060 -17.73431 -17.03075 -16.89317 -16.69166 -16.13707 -15.70505 -15.47238 -15.28439 -14.70836 -14.38421 -14.07650 -13.64971 -13.52743 -13.28837 -13.23986 -13.10644 -12.94357 -12.85137 -12.84212 -12.60570 -12.56944 -12.31987 -12.13925 -11.61890 -11.35957 -11.12922 -10.31358 -9.42950 -9.37725 -8.87145 -8.66629 -8.36955 -6.13481 1.29927 1.34015 1.40921 1.47927 1.75394 2.12377 2.20722 2.29037 2.97123 3.07480 3.33997 3.84977 3.98997 4.06846 4.16071 4.25210 4.31414 4.41273 4.47000 4.49588 4.53257 4.64965 4.66598 4.75409 4.78208 4.80660 4.82441 4.88124 5.07393 5.19269 5.32902 5.39529 5.42528 5.46627 6.00911 6.04808 6.18095 6.19673 6.39918 6.58770 7.04986 8.72246 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.047523 B = 0.002886 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.048893 B = 9699.748661 C = 9784.358567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.071 3.929 4 C -0.081 4.081 5 C -0.087 4.087 6 S -0.201 6.201 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.014 3.986 10 N -0.908 5.908 11 Si 0.994 3.006 12 H -0.265 1.265 13 H -0.275 1.275 14 H -0.264 1.264 15 C 0.125 3.875 16 C 0.014 3.986 17 C -0.213 4.213 18 C -0.223 4.223 19 C -0.020 4.020 20 N -0.444 5.444 21 C 0.067 3.933 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.271 0.729 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.184 0.816 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -19.535 -12.548 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.058 4.058 4 C -0.120 4.120 5 C -0.236 4.236 6 S 0.028 5.972 7 C -0.686 4.686 8 H 0.092 0.908 9 C -0.191 4.191 10 N -0.545 5.545 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.200 1.200 14 H -0.188 1.188 15 C -0.003 4.003 16 C -0.099 4.099 17 C -0.239 4.239 18 C -0.247 4.247 19 C -0.150 4.150 20 N -0.119 5.119 21 C -0.073 4.073 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.201 0.799 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.066 -20.005 -10.841 22.847 hybrid contribution 0.520 1.839 -1.550 2.460 sum 2.586 -18.166 -12.390 22.140 Atomic orbital electron populations 1.22405 0.87007 1.02294 1.00613 1.61944 1.08712 1.13342 1.42958 1.22022 1.00567 0.87378 0.95881 1.21147 1.00732 0.91797 0.98288 1.23152 1.02599 0.98791 0.99056 1.84680 1.75077 1.13990 1.23463 1.23013 1.40934 0.98590 1.06074 0.90839 1.26086 0.95524 1.03414 0.94035 1.70158 1.41202 1.35988 1.07118 0.85065 0.78861 0.76336 0.78156 1.18932 1.20011 1.18830 1.20496 1.00612 0.86978 0.92213 1.20230 0.96314 0.91742 1.01568 1.20873 1.00086 0.95359 1.07540 1.21104 1.00884 0.97229 1.05483 1.22244 0.96482 0.90144 1.06174 1.44124 1.21036 1.08230 1.38485 1.22182 0.83945 1.04254 0.96965 0.91154 0.91887 0.94998 0.89746 0.94186 0.92114 0.91755 0.91644 0.92032 0.91974 0.89417 0.92156 0.84946 0.83847 0.79867 0.89779 0.88553 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.12 127.69 1.16 1.75 16 2 N -0.55 -12.76 4.75 -927.07 -4.41 -17.16 16 3 C 0.07 1.75 4.96 86.30 0.43 2.18 16 4 C -0.08 -2.60 5.15 30.59 0.16 -2.44 16 5 C -0.09 -3.45 5.67 71.98 0.41 -3.04 16 6 S -0.20 -10.78 21.44 -56.49 -1.21 -11.99 16 7 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16 8 H 0.07 4.08 7.80 -2.91 -0.02 4.05 16 9 C 0.01 0.82 5.49 84.86 0.47 1.28 16 10 N -0.91 -55.24 13.22 21.65 0.29 -54.96 16 11 Si 0.99 43.93 29.55 68.60 2.03 45.96 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 13 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 14 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 15 C 0.12 2.49 4.87 85.55 0.42 2.91 16 16 C 0.01 0.31 5.63 41.08 0.23 0.54 16 17 C -0.21 -4.69 9.74 22.14 0.22 -4.47 16 18 C -0.22 -4.51 10.86 22.14 0.24 -4.27 16 19 C -0.02 -0.36 11.43 83.21 0.95 0.59 16 20 N -0.44 -8.60 3.15 -533.24 -1.68 -10.28 16 21 C 0.07 0.93 10.80 127.77 1.38 2.31 16 22 H 0.07 1.67 6.55 -2.39 -0.02 1.66 16 23 H 0.06 1.61 6.30 -2.39 -0.02 1.59 16 24 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 1.91 7.93 -2.39 -0.02 1.89 16 26 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 27 H 0.06 2.03 6.47 -2.39 -0.02 2.01 16 28 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 32 H 0.09 1.56 7.73 -2.39 -0.02 1.54 16 33 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 34 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.32 7.73 -2.38 -0.02 1.30 16 Total: -1.00 -68.83 334.75 2.72 -66.11 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.00 Total: 15.57 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 6.70 Total: -33.25 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -5.80 Total: -82.40 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.21 Total: -11.99 kcal Total: -68.83 2.72 -66.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701664143.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.960 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds