Wall clock time and date at job start Mon Mar 30 2020 06:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46955 * 2 1 4 4 H 1.08996 * 109.47270 * 305.64624 * 3 2 1 5 5 C 1.50699 * 109.46939 * 185.64381 * 3 2 1 6 6 H 1.07997 * 120.00111 * 240.00369 * 5 3 2 7 7 C 1.37876 * 120.00030 * 60.00454 * 5 3 2 8 8 N 1.31513 * 119.99944 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00282 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46671 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47371 * 119.99616 * 9 7 5 12 12 H 1.48501 * 109.46923 * 239.99869 * 9 7 5 13 13 N 1.46900 * 109.46930 * 65.64790 * 3 2 1 14 14 C 1.46901 * 110.99882 * 204.31408 * 13 3 2 15 15 H 1.08998 * 109.47271 * 326.32526 * 14 13 3 16 16 C 1.52995 * 109.47224 * 86.32699 * 14 13 3 17 17 C 1.50701 * 109.47282 * 206.32674 * 14 13 3 18 18 N 1.29026 * 124.92077 * 134.99793 * 17 14 13 19 19 C 1.31780 * 117.13143 * 179.97438 * 18 17 14 20 20 C 1.50693 * 122.75364 * 179.97438 * 19 18 17 21 21 C 1.33637 * 114.49508 * 0.02562 * 19 18 17 22 22 C 1.50702 * 126.03940 * 179.97438 * 21 19 18 23 23 S 1.70981 * 124.91638 * 314.69945 * 17 14 13 24 24 H 1.08999 * 109.47341 * 53.71353 * 1 2 3 25 25 H 1.08998 * 109.46671 * 293.71045 * 1 2 3 26 26 H 1.09000 * 109.47021 * 173.71651 * 1 2 3 27 27 H 1.08996 * 109.47064 * 120.00375 * 2 1 3 28 28 H 1.08998 * 109.46986 * 240.00147 * 2 1 3 29 29 H 0.96998 * 120.00196 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00353 * 328.26395 * 13 3 2 31 31 H 1.09005 * 109.47089 * 64.48592 * 16 14 13 32 32 H 1.08999 * 109.47269 * 184.48363 * 16 14 13 33 33 H 1.09000 * 109.47271 * 304.48278 * 16 14 13 34 34 H 1.08998 * 109.47312 * 90.02568 * 20 19 18 35 35 H 1.09006 * 109.47412 * 210.02764 * 20 19 18 36 36 H 1.09002 * 109.46875 * 330.02110 * 20 19 18 37 37 H 1.08996 * 109.47196 * 89.99692 * 22 21 19 38 38 H 1.09000 * 109.47781 * 210.00211 * 22 21 19 39 39 H 1.09003 * 109.46652 * 329.99944 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3831 0.3449 -2.1914 9 14 5.9902 0.8853 -1.4253 10 1 6.5965 1.5459 -0.2416 11 1 6.4804 -0.5134 -1.5173 12 1 6.3721 1.6256 -2.6546 13 7 1.6648 2.0945 1.2618 14 6 1.6000 3.5533 1.1016 15 1 2.3536 3.8737 0.3822 16 6 0.2114 3.9497 0.5962 17 6 1.8593 4.2165 2.4297 18 7 2.6384 5.2290 2.6100 19 6 2.7526 5.6879 3.8401 20 6 3.6274 6.8629 4.1940 21 6 2.0300 5.0252 4.7480 22 6 1.9672 5.3268 6.2232 23 16 1.1581 3.7407 3.9147 24 1 -0.3634 0.6082 -0.8283 25 1 -0.3632 0.4132 0.9409 26 1 -0.3633 -1.0215 -0.1125 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.7979 -0.0499 -2.9743 30 1 0.7913 1.7300 1.6114 31 1 -0.5347 3.7011 1.3510 32 1 0.1880 5.0219 0.4015 33 1 -0.0085 3.4085 -0.3241 34 1 3.0488 7.7833 4.1154 35 1 3.9927 6.7495 5.2147 36 1 4.4733 6.9056 3.5080 37 1 1.1624 6.0363 6.4151 38 1 1.7788 4.4057 6.7748 39 1 2.9152 5.7565 6.5468 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702017635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:12 Heat of formation + Delta-G solvation = 7.215094 kcal Electronic energy + Delta-G solvation = -18599.869990 eV Core-core repulsion = 15860.806141 eV Total energy + Delta-G solvation = -2739.063850 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87597 -38.71345 -35.60504 -33.96486 -33.08978 -30.63408 -30.14888 -28.07665 -26.70255 -25.36544 -24.53709 -22.21325 -21.59672 -19.66596 -18.75329 -18.31345 -16.83728 -16.70526 -15.97010 -15.87033 -15.46350 -14.82000 -14.48560 -14.40525 -14.12426 -13.85277 -13.81545 -13.67166 -13.46755 -13.19754 -12.98953 -12.89010 -12.83362 -12.71521 -12.55841 -12.26495 -12.00979 -11.87548 -11.62332 -11.47663 -11.05595 -10.49108 -10.44422 -10.05062 -9.41547 -9.12573 -8.09042 -6.19553 -0.16749 0.51497 0.92397 1.36258 1.38843 1.50499 1.87447 2.41885 3.01002 3.17143 3.77485 4.01733 4.10601 4.15540 4.23558 4.34243 4.52925 4.59487 4.62289 4.70395 4.71222 4.76909 4.82940 4.88848 4.97101 5.02614 5.07614 5.09882 5.15648 5.26845 5.37296 5.48973 5.60298 5.73606 5.88417 6.31071 6.42316 6.90781 6.92551 6.93901 7.48813 8.94053 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.005869 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.103292 B = 4769.911258 C = 5647.464671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.231 3.769 4 H -0.018 1.018 5 C -0.511 4.511 6 H 0.038 0.962 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.280 1.280 13 N -0.679 5.679 14 C 0.162 3.838 15 H 0.070 0.930 16 C -0.162 4.162 17 C 0.061 3.939 18 N -0.511 5.511 19 C 0.032 3.968 20 C -0.071 4.071 21 C -0.240 4.240 22 C -0.069 4.069 23 S 0.149 5.851 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.261 0.739 30 H 0.333 0.667 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 8.850 14.424 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.123 3.877 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.057 0.943 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.206 1.206 13 N -0.311 5.311 14 C 0.048 3.952 15 H 0.088 0.912 16 C -0.222 4.222 17 C -0.218 4.218 18 N -0.227 5.227 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.361 4.361 22 C -0.128 4.128 23 S 0.405 5.595 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.773 8.166 14.314 17.817 hybrid contribution 1.009 0.544 -1.147 1.622 sum -5.764 8.710 13.167 16.806 Atomic orbital electron populations 1.21760 0.95947 1.01303 1.00683 1.21584 0.94474 0.98493 1.01344 1.18921 0.93701 0.90819 0.84230 1.00046 1.21424 0.93022 1.36520 1.03980 0.94338 1.25544 1.01743 0.95364 0.95607 1.69971 1.35860 1.39829 1.09779 0.85661 0.81519 0.77800 0.77550 1.20496 1.20144 1.20583 1.60518 1.36645 1.01528 1.32435 1.19788 0.97860 0.88570 0.89025 0.91197 1.22378 0.95289 1.02511 1.01976 1.26933 0.97925 0.96126 1.00767 1.66101 1.18870 1.13200 1.24518 1.20670 1.01519 1.01255 0.86520 1.20411 0.97214 0.92724 1.02710 1.26207 1.05677 1.00963 1.03290 1.20357 1.04517 1.03039 0.84855 1.83474 1.44117 1.31430 1.00436 0.94071 0.92299 0.92397 0.94542 0.91171 0.92961 0.84732 0.90641 0.91452 0.91844 0.89559 0.88360 0.92114 0.89057 0.90450 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.63 71.98 0.69 -4.31 16 2 C -0.12 -5.57 5.37 30.60 0.16 -5.40 16 3 C 0.23 11.50 1.83 44.17 0.08 11.58 16 4 H -0.02 -0.98 7.20 -2.39 -0.02 -0.99 16 5 C -0.51 -29.18 8.46 25.60 0.22 -28.96 16 6 H 0.04 2.33 7.81 -2.91 -0.02 2.30 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -52.55 11.29 21.45 0.24 -52.31 16 9 Si 0.95 45.67 29.54 68.60 2.03 47.69 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.68 -28.65 5.84 -477.18 -2.79 -31.44 16 14 C 0.16 6.44 2.90 44.17 0.13 6.57 16 15 H 0.07 3.35 7.60 -2.39 -0.02 3.33 16 16 C -0.16 -5.18 9.14 71.98 0.66 -4.53 16 17 C 0.06 2.25 6.32 88.52 0.56 2.81 16 18 N -0.51 -19.56 10.53 -179.41 -1.89 -21.45 16 19 C 0.03 0.96 6.74 41.52 0.28 1.24 16 20 C -0.07 -1.58 10.06 71.23 0.72 -0.86 16 21 C -0.24 -6.27 6.59 24.64 0.16 -6.10 16 22 C -0.07 -1.10 10.10 71.24 0.72 -0.38 16 23 S 0.15 4.36 22.97 -56.49 -1.30 3.06 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.82 6.67 -2.39 -0.02 1.80 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 3.71 5.94 -2.39 -0.01 3.70 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.33 12.26 6.34 -89.69 -0.57 11.69 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.11 7.48 -2.39 -0.02 2.10 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.57 6.72 -2.38 -0.02 1.55 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.19 6.76 -2.39 -0.02 1.18 16 Total: -1.00 -66.12 328.01 1.59 -64.53 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.47 Total: 16.89 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.83 Total: -26.98 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.44 Total: -105.20 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.30 Total: 3.06 kcal Total: -66.12 1.59 -64.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702017635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.747 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds