Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 H 1.09001 * 109.47306 * 54.92194 * 3 2 1 5 5 C 1.50695 * 109.47282 * 174.92811 * 3 2 1 6 6 H 1.07996 * 119.99965 * 119.99821 * 5 3 2 7 7 C 1.37872 * 119.99868 * 299.99824 * 5 3 2 8 8 N 1.31518 * 119.99918 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99970 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47220 * 89.99956 * 9 7 5 11 11 H 1.48504 * 109.46681 * 209.99798 * 9 7 5 12 12 H 1.48495 * 109.47070 * 329.99825 * 9 7 5 13 13 N 1.46900 * 109.47108 * 294.92982 * 3 2 1 14 14 C 1.46903 * 111.00278 * 156.22221 * 13 3 2 15 15 H 1.08998 * 109.47078 * 34.63696 * 14 13 3 16 16 C 1.53001 * 109.47128 * 274.63549 * 14 13 3 17 17 C 1.50701 * 109.47190 * 154.63699 * 14 13 3 18 18 N 1.29025 * 124.91748 * 44.69790 * 17 14 13 19 19 C 1.31785 * 117.12452 * 179.81538 * 18 17 14 20 20 C 1.50701 * 122.74791 * 180.22242 * 19 18 17 21 21 C 1.33634 * 114.49759 * 0.46883 * 19 18 17 22 22 C 1.50698 * 126.03579 * 179.72183 * 21 19 18 23 23 S 1.70973 * 124.91596 * 224.99965 * 17 14 13 24 24 H 1.09001 * 109.47153 * 175.42093 * 1 2 3 25 25 H 1.09000 * 109.46683 * 295.42170 * 1 2 3 26 26 H 1.09005 * 109.47059 * 55.41714 * 1 2 3 27 27 H 1.08996 * 109.46670 * 120.00011 * 2 1 3 28 28 H 1.08998 * 109.46539 * 240.00070 * 2 1 3 29 29 H 0.97003 * 119.99890 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99967 * 280.17271 * 13 3 2 31 31 H 1.08995 * 109.47341 * 184.99715 * 16 14 13 32 32 H 1.08998 * 109.46795 * 305.00125 * 16 14 13 33 33 H 1.09001 * 109.47072 * 64.99556 * 16 14 13 34 34 H 1.08996 * 109.47358 * 270.26263 * 20 19 18 35 35 H 1.08999 * 109.47286 * 30.27264 * 20 19 18 36 36 H 1.09004 * 109.46693 * 150.26488 * 20 19 18 37 37 H 1.09000 * 109.47207 * 180.02562 * 22 21 19 38 38 H 1.09004 * 109.47371 * 300.01312 * 22 21 19 39 39 H 1.09003 * 109.47245 * 60.01704 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6044 1.9819 0.8410 5 6 3.5418 1.4443 0.1256 6 1 4.1480 1.8885 -0.6500 7 6 4.1418 0.8789 1.2307 8 7 5.4524 0.8801 1.3401 9 14 3.0933 0.1100 2.5718 10 1 2.8728 -1.3262 2.2655 11 1 3.7891 0.2365 3.8777 12 1 1.7845 0.8084 2.6385 13 7 1.6529 2.0987 -1.2559 14 6 1.6021 3.5579 -1.0937 15 1 2.3792 3.8733 -0.3975 16 6 0.2319 3.9627 -0.5463 17 6 1.8251 4.2199 -2.4290 18 7 1.2684 3.8576 -3.5351 19 6 1.5712 4.5495 -4.6150 20 6 0.9911 4.2397 -5.9710 21 6 2.4388 5.5450 -4.4101 22 6 2.9661 6.4912 -5.4578 23 16 2.8581 5.5553 -2.6988 24 1 -0.3633 -1.0244 -0.0820 25 1 -0.3633 0.4412 0.9282 26 1 -0.3633 0.5833 -0.8461 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 5.8746 0.4820 2.1174 30 1 2.2760 1.8399 -2.0062 31 1 0.1621 5.0498 -0.5094 32 1 -0.5496 3.5703 -1.1968 33 1 0.1071 3.5564 0.4575 34 1 1.6318 3.5234 -6.4853 35 1 -0.0057 3.8153 -5.8514 36 1 0.9276 5.1566 -6.5570 37 1 3.6571 7.1964 -4.9959 38 1 3.4873 5.9249 -6.2297 39 1 2.1355 7.0368 -5.9058 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702017637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = 30.982166 kcal Electronic energy + Delta-G solvation = -18673.775861 eV Core-core repulsion = 15935.742629 eV Total energy + Delta-G solvation = -2738.033232 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77178 -36.95887 -34.08116 -32.28215 -31.77008 -29.68056 -29.04891 -26.50735 -25.47983 -24.30917 -22.50595 -20.80579 -19.83225 -18.29208 -17.72099 -16.94409 -15.29802 -15.20416 -14.88782 -14.38155 -13.77657 -13.53872 -13.10468 -13.02221 -12.91348 -12.84496 -12.61846 -12.47434 -12.15318 -11.91693 -11.82083 -11.52713 -11.37026 -11.06122 -10.90834 -10.84798 -10.63931 -10.24837 -9.75408 -9.51447 -9.23864 -9.19261 -8.97033 -8.59513 -8.35515 -7.38810 -6.14264 -4.15903 0.92904 1.56777 1.99539 3.03099 3.25754 3.35945 3.38244 4.32177 4.35856 4.95402 5.04884 5.08624 5.18437 5.22151 5.38046 5.48743 5.63731 5.70388 5.77444 5.80937 5.84111 6.02583 6.07052 6.10647 6.17433 6.32174 6.36251 6.46845 6.68227 6.70419 6.75847 7.01862 7.11319 7.27392 7.54373 7.94803 8.11237 8.35309 8.45468 8.87596 9.48933 10.98516 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.005500 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.728675 B = 5089.811635 C = 5602.596090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.181 3.819 4 H 0.036 0.964 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.658 5.658 14 C 0.164 3.836 15 H 0.071 0.929 16 C -0.129 4.129 17 C 0.069 3.931 18 N -0.452 5.452 19 C 0.060 3.940 20 C -0.074 4.074 21 C -0.244 4.244 22 C -0.067 4.067 23 S 0.108 5.892 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.264 0.736 30 H 0.340 0.660 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 9.626 -10.232 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.072 3.928 4 H 0.053 0.947 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.188 1.188 13 N -0.289 5.289 14 C 0.050 3.950 15 H 0.089 0.911 16 C -0.188 4.188 17 C -0.210 4.210 18 N -0.166 5.166 19 C -0.073 4.073 20 C -0.133 4.133 21 C -0.365 4.365 22 C -0.126 4.126 23 S 0.365 5.635 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.238 9.655 -9.344 15.761 hybrid contribution 0.423 -0.560 0.119 0.711 sum -7.816 9.096 -9.226 15.130 Atomic orbital electron populations 1.21753 0.97452 0.99571 1.01425 1.21779 0.93965 0.99046 1.00372 1.19678 0.94235 0.90872 0.88029 0.94661 1.21747 0.90529 1.39392 1.07133 0.91074 1.25000 0.94761 0.95184 0.97916 1.69922 1.08920 1.44878 1.29693 0.86814 0.80621 0.79962 0.80624 1.20426 1.22622 1.18842 1.60886 1.56601 1.02808 1.08615 1.20084 0.98148 0.89973 0.86751 0.91135 1.21764 0.96209 0.99402 1.01441 1.27307 0.97040 0.97736 0.98913 1.66111 1.24841 1.28228 0.97396 1.20212 0.97868 0.93323 0.95896 1.20293 1.01247 1.01786 0.90007 1.25634 1.07129 1.05667 0.98083 1.20129 1.00644 0.96586 0.95272 1.84053 1.44685 1.32018 1.02696 0.94860 0.94345 0.91480 0.93720 0.92423 0.92617 0.84255 0.93433 0.91588 0.91763 0.90893 0.90755 0.91235 0.91549 0.90736 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.85 37.16 0.37 -2.33 16 2 C -0.11 -2.49 5.11 -26.73 -0.14 -2.63 16 3 C 0.18 4.18 1.39 -68.87 -0.10 4.08 16 4 H 0.04 0.84 6.25 -51.93 -0.32 0.52 16 5 C -0.55 -15.00 8.79 -34.44 -0.30 -15.30 16 6 H 0.07 2.13 8.00 -52.49 -0.42 1.71 16 7 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 9 Si 0.89 21.82 24.41 -169.99 -4.15 17.67 16 10 H -0.28 -6.69 6.83 56.52 0.39 -6.30 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.66 -13.55 5.39 -102.17 -0.55 -14.10 16 14 C 0.16 3.06 2.92 -68.86 -0.20 2.86 16 15 H 0.07 1.43 7.58 -51.93 -0.39 1.04 16 16 C -0.13 -2.10 9.36 37.16 0.35 -1.75 16 17 C 0.07 1.21 5.90 -13.46 -0.08 1.13 16 18 N -0.45 -7.88 10.49 -8.06 -0.08 -7.96 16 19 C 0.06 0.88 6.74 -84.22 -0.57 0.31 16 20 C -0.07 -0.82 10.06 36.01 0.36 -0.46 16 21 C -0.24 -3.30 6.59 -35.92 -0.24 -3.54 16 22 C -0.07 -0.64 9.56 36.00 0.34 -0.29 16 23 S 0.11 1.64 23.18 -107.50 -2.49 -0.85 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 27 H 0.04 1.04 3.21 -51.93 -0.17 0.87 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 30 H 0.34 7.43 8.07 -39.29 -0.32 7.11 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.05 7.51 -51.93 -0.39 0.66 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.60 7.46 -51.93 -0.39 0.21 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.58 8.00 -51.93 -0.42 0.16 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -29.97 324.90 -8.10 -38.08 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.20 Total: 4.49 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -0.30 Total: -15.90 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.14 Total: -48.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.15 Total: 17.67 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.49 Total: -0.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.97 -8.10 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702017637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.057 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds