Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 H 1.09001 * 109.47306 * 54.92194 * 3 2 1 5 5 C 1.50695 * 109.47282 * 174.92811 * 3 2 1 6 6 H 1.07996 * 119.99965 * 119.99821 * 5 3 2 7 7 C 1.37872 * 119.99868 * 299.99824 * 5 3 2 8 8 N 1.31518 * 119.99918 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99970 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47220 * 89.99956 * 9 7 5 11 11 H 1.48504 * 109.46681 * 209.99798 * 9 7 5 12 12 H 1.48495 * 109.47070 * 329.99825 * 9 7 5 13 13 N 1.46900 * 109.47108 * 294.92982 * 3 2 1 14 14 C 1.46903 * 111.00278 * 156.22221 * 13 3 2 15 15 H 1.08998 * 109.47078 * 34.63696 * 14 13 3 16 16 C 1.53001 * 109.47128 * 274.63549 * 14 13 3 17 17 C 1.50701 * 109.47190 * 154.63699 * 14 13 3 18 18 N 1.29025 * 124.91748 * 44.69790 * 17 14 13 19 19 C 1.31785 * 117.12452 * 179.81538 * 18 17 14 20 20 C 1.50701 * 122.74791 * 180.22242 * 19 18 17 21 21 C 1.33634 * 114.49759 * 0.46883 * 19 18 17 22 22 C 1.50698 * 126.03579 * 179.72183 * 21 19 18 23 23 S 1.70973 * 124.91596 * 224.99965 * 17 14 13 24 24 H 1.09001 * 109.47153 * 175.42093 * 1 2 3 25 25 H 1.09000 * 109.46683 * 295.42170 * 1 2 3 26 26 H 1.09005 * 109.47059 * 55.41714 * 1 2 3 27 27 H 1.08996 * 109.46670 * 120.00011 * 2 1 3 28 28 H 1.08998 * 109.46539 * 240.00070 * 2 1 3 29 29 H 0.97003 * 119.99890 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99967 * 280.17271 * 13 3 2 31 31 H 1.08995 * 109.47341 * 184.99715 * 16 14 13 32 32 H 1.08998 * 109.46795 * 305.00125 * 16 14 13 33 33 H 1.09001 * 109.47072 * 64.99556 * 16 14 13 34 34 H 1.08996 * 109.47358 * 270.26263 * 20 19 18 35 35 H 1.08999 * 109.47286 * 30.27264 * 20 19 18 36 36 H 1.09004 * 109.46693 * 150.26488 * 20 19 18 37 37 H 1.09000 * 109.47207 * 180.02562 * 22 21 19 38 38 H 1.09004 * 109.47371 * 300.01312 * 22 21 19 39 39 H 1.09003 * 109.47245 * 60.01704 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6044 1.9819 0.8410 5 6 3.5418 1.4443 0.1256 6 1 4.1480 1.8885 -0.6500 7 6 4.1418 0.8789 1.2307 8 7 5.4524 0.8801 1.3401 9 14 3.0933 0.1100 2.5718 10 1 2.8728 -1.3262 2.2655 11 1 3.7891 0.2365 3.8777 12 1 1.7845 0.8084 2.6385 13 7 1.6529 2.0987 -1.2559 14 6 1.6021 3.5579 -1.0937 15 1 2.3792 3.8733 -0.3975 16 6 0.2319 3.9627 -0.5463 17 6 1.8251 4.2199 -2.4290 18 7 1.2684 3.8576 -3.5351 19 6 1.5712 4.5495 -4.6150 20 6 0.9911 4.2397 -5.9710 21 6 2.4388 5.5450 -4.4101 22 6 2.9661 6.4912 -5.4578 23 16 2.8581 5.5553 -2.6988 24 1 -0.3633 -1.0244 -0.0820 25 1 -0.3633 0.4412 0.9282 26 1 -0.3633 0.5833 -0.8461 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 5.8746 0.4820 2.1174 30 1 2.2760 1.8399 -2.0062 31 1 0.1621 5.0498 -0.5094 32 1 -0.5496 3.5703 -1.1968 33 1 0.1071 3.5564 0.4575 34 1 1.6318 3.5234 -6.4853 35 1 -0.0057 3.8153 -5.8514 36 1 0.9276 5.1566 -6.5570 37 1 3.6571 7.1964 -4.9959 38 1 3.4873 5.9249 -6.2297 39 1 2.1355 7.0368 -5.9058 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702017637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = 10.868444 kcal Electronic energy + Delta-G solvation = -18674.648058 eV Core-core repulsion = 15935.742629 eV Total energy + Delta-G solvation = -2738.905429 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97303 -38.61163 -35.60560 -34.09049 -33.22746 -30.83296 -30.35950 -28.35618 -26.63969 -25.47764 -24.29977 -22.19874 -21.56921 -19.57297 -19.13529 -18.76137 -17.06023 -16.68999 -16.09100 -15.97353 -15.20935 -15.01700 -14.73470 -14.16384 -14.14706 -14.01675 -13.81357 -13.66786 -13.57672 -13.29535 -13.09461 -12.97129 -12.86515 -12.59386 -12.43321 -12.35603 -12.05640 -11.95253 -11.56610 -11.34272 -11.18018 -10.72153 -10.48978 -10.16184 -9.49100 -9.14403 -8.34337 -6.40120 -0.26180 0.39189 0.81123 1.30738 1.34950 1.46046 1.84631 2.29282 3.01104 3.11278 3.47344 3.91575 4.07082 4.17595 4.33748 4.38154 4.43200 4.48775 4.66295 4.68577 4.71761 4.80745 4.84384 4.90192 4.95526 4.97766 5.05113 5.07414 5.15457 5.24644 5.36237 5.45367 5.48976 5.49822 5.64326 6.04876 6.36576 6.53121 6.71453 6.88319 7.28855 8.81958 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.005500 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.728675 B = 5089.811635 C = 5602.596090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.189 3.811 4 H 0.035 0.965 5 C -0.547 4.547 6 H 0.028 0.972 7 C 0.018 3.982 8 N -0.946 5.946 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.300 1.300 12 H -0.243 1.243 13 N -0.647 5.647 14 C 0.163 3.837 15 H 0.045 0.955 16 C -0.119 4.119 17 C 0.038 3.962 18 N -0.468 5.468 19 C 0.033 3.967 20 C -0.070 4.070 21 C -0.225 4.225 22 C -0.069 4.069 23 S 0.103 5.897 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.266 0.734 30 H 0.329 0.671 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 10.237 -11.195 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 C 0.079 3.921 4 H 0.053 0.947 5 C -0.586 4.586 6 H 0.046 0.954 7 C -0.180 4.180 8 N -0.585 5.585 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.228 1.228 12 H -0.166 1.166 13 N -0.277 5.277 14 C 0.050 3.950 15 H 0.063 0.937 16 C -0.178 4.178 17 C -0.241 4.241 18 N -0.183 5.183 19 C -0.099 4.099 20 C -0.129 4.129 21 C -0.346 4.346 22 C -0.128 4.128 23 S 0.359 5.641 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.145 0.855 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.298 10.274 -10.322 17.837 hybrid contribution 1.149 -0.633 0.256 1.336 sum -9.149 9.641 -10.066 16.673 Atomic orbital electron populations 1.21653 0.94411 1.01242 1.01912 1.21725 0.96636 0.97391 0.99552 1.19540 0.91159 0.92268 0.89124 0.94738 1.22022 0.92772 1.38086 1.05755 0.95363 1.25850 0.95812 0.95881 1.00484 1.70069 1.10966 1.46710 1.30804 0.85826 0.79652 0.79629 0.77216 1.19316 1.22754 1.16613 1.60922 1.55420 1.04322 1.07013 1.20044 0.98727 0.88674 0.87598 0.93734 1.21681 0.94492 1.00655 1.00998 1.26983 0.99051 0.99430 0.98593 1.66091 1.25177 1.28964 0.98026 1.20792 0.98835 0.93698 0.96565 1.20393 1.00770 1.03436 0.88271 1.26199 1.05526 1.05399 0.97490 1.20351 1.01804 0.96220 0.94428 1.84005 1.44200 1.31029 1.04819 0.92557 0.93545 0.91360 0.94666 0.93175 0.92547 0.85502 0.91526 0.91622 0.91877 0.90320 0.91159 0.88255 0.90755 0.89092 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.85 71.98 0.71 -3.95 16 2 C -0.11 -4.91 5.11 30.60 0.16 -4.75 16 3 C 0.19 8.76 1.39 44.17 0.06 8.82 16 4 H 0.03 1.62 6.25 -2.39 -0.01 1.61 16 5 C -0.55 -30.96 8.79 25.60 0.22 -30.74 16 6 H 0.03 1.79 8.00 -2.91 -0.02 1.77 16 7 C 0.02 1.05 5.45 84.65 0.46 1.51 16 8 N -0.95 -59.11 13.96 21.45 0.30 -58.82 16 9 Si 0.95 44.93 24.41 68.60 1.67 46.60 16 10 H -0.27 -12.13 6.83 99.48 0.68 -11.45 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 12 H -0.24 -10.55 6.53 99.48 0.65 -9.90 16 13 N -0.65 -27.08 5.39 -477.16 -2.57 -29.65 16 14 C 0.16 6.19 2.92 44.17 0.13 6.32 16 15 H 0.04 1.90 7.58 -2.39 -0.02 1.89 16 16 C -0.12 -3.80 9.36 71.98 0.67 -3.12 16 17 C 0.04 1.33 5.90 88.52 0.52 1.85 16 18 N -0.47 -16.17 10.49 -179.41 -1.88 -18.05 16 19 C 0.03 0.91 6.74 41.52 0.28 1.19 16 20 C -0.07 -1.37 10.06 71.24 0.72 -0.65 16 21 C -0.23 -5.68 6.59 24.64 0.16 -5.52 16 22 C -0.07 -1.08 9.56 71.24 0.68 -0.40 16 23 S 0.10 3.12 23.18 -56.49 -1.31 1.81 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 2.34 7.63 -2.38 -0.02 2.32 16 27 H 0.04 1.57 3.21 -2.39 -0.01 1.56 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.33 14.91 8.07 -89.69 -0.72 14.19 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.99 7.51 -2.39 -0.02 1.98 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.32 7.46 -2.39 -0.02 1.31 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.10 1.12 8.00 -2.39 -0.02 1.10 16 Total: -1.00 -66.69 324.90 1.22 -65.47 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.23 Total: 22.06 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.78 Total: -29.43 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.16 Total: -106.51 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.67 Total: 46.60 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -66.69 1.22 -65.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702017637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.342 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds