Wall clock time and date at job start Mon Mar 30 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 H 1.09005 * 109.47165 * 175.24101 * 3 2 1 5 5 C 1.50692 * 109.47541 * 55.23479 * 3 2 1 6 6 H 1.08001 * 120.00415 * 239.99902 * 5 3 2 7 7 C 1.37883 * 119.99782 * 60.00054 * 5 3 2 8 8 N 1.31507 * 120.00097 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99845 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47177 * 59.99894 * 9 7 5 11 11 H 1.48494 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47326 * 300.00036 * 9 7 5 13 13 N 1.46907 * 109.46961 * 295.23287 * 3 2 1 14 14 C 1.46896 * 110.99960 * 274.78187 * 13 3 2 15 15 H 1.08997 * 109.47545 * 34.64712 * 14 13 3 16 16 C 1.53003 * 109.46704 * 274.65009 * 14 13 3 17 17 C 1.50703 * 109.46992 * 154.65309 * 14 13 3 18 18 N 1.29025 * 124.91442 * 44.69530 * 17 14 13 19 19 C 1.31786 * 117.12020 * 179.81364 * 18 17 14 20 20 C 1.50706 * 122.74612 * 180.22293 * 19 18 17 21 21 C 1.33639 * 114.50405 * 0.46679 * 19 18 17 22 22 C 1.50696 * 126.04158 * 179.71614 * 21 19 18 23 23 S 1.70972 * 124.91578 * 224.99284 * 17 14 13 24 24 H 1.09001 * 109.46670 * 58.44764 * 1 2 3 25 25 H 1.09000 * 109.47230 * 178.44576 * 1 2 3 26 26 H 1.08998 * 109.47382 * 298.44931 * 1 2 3 27 27 H 1.08999 * 109.47493 * 239.99409 * 2 1 3 28 28 H 1.09006 * 109.46819 * 119.99599 * 2 1 3 29 29 H 0.97006 * 120.00096 * 179.97438 * 8 7 5 30 30 H 1.00899 * 110.99808 * 38.72876 * 13 3 2 31 31 H 1.09005 * 109.47086 * 180.02562 * 16 14 13 32 32 H 1.08997 * 109.47402 * 300.00077 * 16 14 13 33 33 H 1.08991 * 109.47310 * 60.00580 * 16 14 13 34 34 H 1.09001 * 109.46764 * 270.26331 * 20 19 18 35 35 H 1.09001 * 109.47334 * 30.26983 * 20 19 18 36 36 H 1.09005 * 109.47032 * 150.27038 * 20 19 18 37 37 H 1.08999 * 109.47221 * 180.02562 * 22 21 19 38 38 H 1.09000 * 109.47115 * 300.02418 * 22 21 19 39 39 H 1.09006 * 109.46597 * 60.01789 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4437 0.0853 5 6 1.4437 2.1862 1.1671 6 1 0.8334 3.0606 0.9954 7 6 1.6772 1.7504 2.4542 8 7 2.4207 0.6860 2.6633 9 14 0.9374 2.6719 3.9010 10 1 -0.5430 2.6697 3.7845 11 1 1.3358 2.0068 5.1674 12 1 1.4319 4.0722 3.9011 13 7 1.6465 2.1010 -1.2529 14 6 2.6198 1.8287 -2.3189 15 1 3.0156 0.8200 -2.2006 16 6 3.7654 2.8393 -2.2338 17 6 1.9427 1.9486 -3.6599 18 7 1.1387 2.8991 -3.9989 19 6 0.6348 2.8544 -5.2158 20 6 -0.3123 3.9005 -5.7448 21 6 1.0284 1.8028 -5.9404 22 6 0.6092 1.4935 -7.3545 23 16 2.1231 0.8410 -4.9498 24 1 -0.3633 0.5378 -0.8758 25 1 -0.3634 -1.0273 -0.0279 26 1 -0.3634 0.4895 0.9035 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5853 0.3796 3.5689 30 1 0.7177 1.8223 -1.5316 31 1 4.4874 2.6375 -3.0251 32 1 3.3696 3.8480 -2.3521 33 1 4.2551 2.7525 -1.2640 34 1 -1.3381 3.6100 -5.5179 35 1 -0.0938 4.8595 -5.2750 36 1 -0.1900 3.9886 -6.8244 37 1 1.0901 0.5720 -7.6827 38 1 -0.4733 1.3725 -7.3943 39 1 0.9076 2.3124 -8.0091 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702017639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:19 Heat of formation + Delta-G solvation = 28.755733 kcal Electronic energy + Delta-G solvation = -18645.516858 eV Core-core repulsion = 15907.387081 eV Total energy + Delta-G solvation = -2738.129777 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83731 -36.98729 -34.08382 -32.34870 -31.12232 -29.65887 -28.48971 -26.21701 -25.37031 -24.32126 -23.24812 -21.00539 -19.27611 -18.20024 -17.83398 -16.28618 -15.19982 -15.08256 -14.85600 -14.31112 -13.78776 -13.33639 -13.13801 -13.07905 -12.91881 -12.83798 -12.56809 -12.26076 -12.17346 -12.08942 -11.49215 -11.39446 -11.01085 -10.98972 -10.82909 -10.68224 -10.51559 -9.95321 -9.86812 -9.57093 -9.24406 -9.06223 -8.96682 -8.42255 -8.31026 -7.21765 -5.94787 -3.95653 0.85531 1.47993 1.89574 2.98202 3.37503 3.41308 3.45441 4.27026 4.47556 4.89841 4.99838 5.12157 5.26183 5.32418 5.37155 5.44447 5.60931 5.64140 5.69848 5.78473 5.85308 6.02203 6.22425 6.33019 6.36625 6.41444 6.45943 6.56619 6.79394 6.90227 7.26465 7.27446 7.49648 7.70897 7.91298 8.03580 8.29745 8.55010 8.63095 9.10074 9.67725 11.12417 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.004765 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.078353 B = 5874.269745 C = 6039.357022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.661 5.661 14 C 0.161 3.839 15 H 0.053 0.947 16 C -0.128 4.128 17 C 0.070 3.930 18 N -0.448 5.448 19 C 0.062 3.938 20 C -0.075 4.075 21 C -0.242 4.242 22 C -0.067 4.067 23 S 0.092 5.908 24 H 0.028 0.972 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.009 0.991 28 H 0.095 0.905 29 H 0.259 0.741 30 H 0.332 0.668 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 0.131 -17.554 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.187 4.187 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.295 5.295 14 C 0.047 3.953 15 H 0.071 0.929 16 C -0.187 4.187 17 C -0.209 4.209 18 N -0.161 5.161 19 C -0.070 4.070 20 C -0.135 4.135 21 C -0.363 4.363 22 C -0.126 4.126 23 S 0.348 5.652 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.821 0.100 -16.975 16.995 hybrid contribution -1.117 -0.026 0.380 1.180 sum -1.938 0.074 -16.596 16.709 Atomic orbital electron populations 1.21563 0.97697 0.98011 1.01252 1.22143 0.95038 1.01242 1.00250 1.19322 0.96137 0.88477 0.85450 0.94550 1.20994 1.30533 1.11464 0.89439 0.91977 1.24893 0.95560 0.95171 0.98680 1.69865 1.38943 1.23958 1.20957 0.86620 0.79516 0.79998 0.81611 1.20426 1.21566 1.20330 1.60988 1.03397 1.62893 1.02185 1.20177 0.93550 0.98043 0.83537 0.92886 1.21750 0.95784 0.99621 1.01581 1.27421 0.99221 0.93172 1.01083 1.66118 1.09852 1.24646 1.15473 1.20267 1.00558 0.96979 0.89217 1.20316 0.96713 0.96393 1.00046 1.25600 1.07108 1.00786 1.02760 1.20133 1.01519 1.01923 0.89042 1.83925 1.44250 1.29084 1.07904 0.95343 0.95845 0.91443 0.97269 0.88669 0.93096 0.84823 0.93773 0.91551 0.91044 0.90819 0.90577 0.91170 0.91578 0.90714 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 2 C -0.15 -3.45 5.49 -26.73 -0.15 -3.60 16 3 C 0.21 5.25 2.14 -68.86 -0.15 5.10 16 4 H 0.04 0.97 7.14 -51.93 -0.37 0.60 16 5 C -0.49 -13.14 7.39 -34.44 -0.25 -13.40 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.56 5.28 -17.82 -0.09 1.47 16 8 N -0.90 -25.13 11.37 55.43 0.63 -24.50 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.66 -14.44 6.00 -102.17 -0.61 -15.06 16 14 C 0.16 3.01 2.91 -68.86 -0.20 2.81 16 15 H 0.05 1.00 7.11 -51.93 -0.37 0.63 16 16 C -0.13 -2.24 9.38 37.16 0.35 -1.89 16 17 C 0.07 1.21 5.90 -13.46 -0.08 1.13 16 18 N -0.45 -7.88 10.49 -8.05 -0.08 -7.96 16 19 C 0.06 0.90 6.74 -84.22 -0.57 0.33 16 20 C -0.08 -0.83 10.06 36.01 0.36 -0.47 16 21 C -0.24 -3.11 6.59 -35.92 -0.24 -3.35 16 22 C -0.07 -0.59 9.56 36.00 0.34 -0.25 16 23 S 0.09 1.28 23.18 -107.50 -2.49 -1.21 16 24 H 0.03 0.58 6.36 -51.93 -0.33 0.25 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 1.60 7.12 -51.93 -0.37 1.23 16 27 H 0.01 0.19 7.40 -51.93 -0.38 -0.19 16 28 H 0.10 2.48 6.21 -51.93 -0.32 2.16 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.33 7.31 6.13 -39.29 -0.24 7.07 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.32 7.45 -51.93 -0.39 0.93 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.59 7.46 -51.93 -0.39 0.20 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.55 8.00 -51.93 -0.42 0.13 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -28.77 326.25 -9.07 -37.84 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.08 Total: 4.08 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.32 Total: -14.55 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.07 Total: -47.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.49 Total: -1.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.77 -9.07 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702017639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.593 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds