Wall clock time and date at job start Mon Mar 30 2020 06:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 H 1.09005 * 109.47165 * 175.24101 * 3 2 1 5 5 C 1.50692 * 109.47541 * 55.23479 * 3 2 1 6 6 H 1.08001 * 120.00415 * 239.99902 * 5 3 2 7 7 C 1.37883 * 119.99782 * 60.00054 * 5 3 2 8 8 N 1.31507 * 120.00097 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99845 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47177 * 59.99894 * 9 7 5 11 11 H 1.48494 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47326 * 300.00036 * 9 7 5 13 13 N 1.46907 * 109.46961 * 295.23287 * 3 2 1 14 14 C 1.46896 * 110.99960 * 274.78187 * 13 3 2 15 15 H 1.08997 * 109.47545 * 34.64712 * 14 13 3 16 16 C 1.53003 * 109.46704 * 274.65009 * 14 13 3 17 17 C 1.50703 * 109.46992 * 154.65309 * 14 13 3 18 18 N 1.29025 * 124.91442 * 44.69530 * 17 14 13 19 19 C 1.31786 * 117.12020 * 179.81364 * 18 17 14 20 20 C 1.50706 * 122.74612 * 180.22293 * 19 18 17 21 21 C 1.33639 * 114.50405 * 0.46679 * 19 18 17 22 22 C 1.50696 * 126.04158 * 179.71614 * 21 19 18 23 23 S 1.70972 * 124.91578 * 224.99284 * 17 14 13 24 24 H 1.09001 * 109.46670 * 58.44764 * 1 2 3 25 25 H 1.09000 * 109.47230 * 178.44576 * 1 2 3 26 26 H 1.08998 * 109.47382 * 298.44931 * 1 2 3 27 27 H 1.08999 * 109.47493 * 239.99409 * 2 1 3 28 28 H 1.09006 * 109.46819 * 119.99599 * 2 1 3 29 29 H 0.97006 * 120.00096 * 179.97438 * 8 7 5 30 30 H 1.00899 * 110.99808 * 38.72876 * 13 3 2 31 31 H 1.09005 * 109.47086 * 180.02562 * 16 14 13 32 32 H 1.08997 * 109.47402 * 300.00077 * 16 14 13 33 33 H 1.08991 * 109.47310 * 60.00580 * 16 14 13 34 34 H 1.09001 * 109.46764 * 270.26331 * 20 19 18 35 35 H 1.09001 * 109.47334 * 30.26983 * 20 19 18 36 36 H 1.09005 * 109.47032 * 150.27038 * 20 19 18 37 37 H 1.08999 * 109.47221 * 180.02562 * 22 21 19 38 38 H 1.09000 * 109.47115 * 300.02418 * 22 21 19 39 39 H 1.09006 * 109.46597 * 60.01789 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4437 0.0853 5 6 1.4437 2.1862 1.1671 6 1 0.8334 3.0606 0.9954 7 6 1.6772 1.7504 2.4542 8 7 2.4207 0.6860 2.6633 9 14 0.9374 2.6719 3.9010 10 1 -0.5430 2.6697 3.7845 11 1 1.3358 2.0068 5.1674 12 1 1.4319 4.0722 3.9011 13 7 1.6465 2.1010 -1.2529 14 6 2.6198 1.8287 -2.3189 15 1 3.0156 0.8200 -2.2006 16 6 3.7654 2.8393 -2.2338 17 6 1.9427 1.9486 -3.6599 18 7 1.1387 2.8991 -3.9989 19 6 0.6348 2.8544 -5.2158 20 6 -0.3123 3.9005 -5.7448 21 6 1.0284 1.8028 -5.9404 22 6 0.6092 1.4935 -7.3545 23 16 2.1231 0.8410 -4.9498 24 1 -0.3633 0.5378 -0.8758 25 1 -0.3634 -1.0273 -0.0279 26 1 -0.3634 0.4895 0.9035 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5853 0.3796 3.5689 30 1 0.7177 1.8223 -1.5316 31 1 4.4874 2.6375 -3.0251 32 1 3.3696 3.8480 -2.3521 33 1 4.2551 2.7525 -1.2640 34 1 -1.3381 3.6100 -5.5179 35 1 -0.0938 4.8595 -5.2750 36 1 -0.1900 3.9886 -6.8244 37 1 1.0901 0.5720 -7.6827 38 1 -0.4733 1.3725 -7.3943 39 1 0.9076 2.3124 -8.0091 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702017639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:18 Heat of formation + Delta-G solvation = 11.187572 kcal Electronic energy + Delta-G solvation = -18646.278671 eV Core-core repulsion = 15907.387081 eV Total energy + Delta-G solvation = -2738.891590 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99234 -38.67671 -35.65064 -33.80711 -32.82771 -30.59963 -30.10221 -28.05654 -26.59950 -25.49355 -25.10933 -22.42632 -21.01178 -19.45651 -19.04001 -18.11555 -16.88212 -16.69260 -16.16768 -15.84427 -15.15831 -14.73547 -14.62438 -14.44653 -14.09802 -13.86925 -13.80343 -13.71002 -13.50717 -13.10105 -12.96255 -12.82105 -12.79282 -12.56343 -12.46911 -12.38061 -11.97081 -11.82190 -11.74323 -11.46449 -10.98516 -10.46039 -10.40995 -10.15716 -9.49287 -8.96703 -8.04334 -6.11771 -0.26726 0.38103 0.78127 1.44597 1.45346 1.52983 1.84908 2.47093 3.10509 3.24623 3.60260 3.90290 4.07641 4.17844 4.26077 4.38234 4.50376 4.56576 4.69083 4.70291 4.72368 4.77741 4.84375 4.90193 4.95034 5.03232 5.07655 5.08661 5.29906 5.35773 5.39668 5.47881 5.64519 5.73532 5.84175 6.31922 6.66129 6.76117 6.92962 6.98408 7.55319 9.01043 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.004765 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.078353 B = 5874.269745 C = 6039.357022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.140 4.140 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.499 4.499 6 H 0.047 0.953 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.667 5.667 14 C 0.162 3.838 15 H 0.050 0.950 16 C -0.120 4.120 17 C 0.033 3.967 18 N -0.474 5.474 19 C 0.031 3.969 20 C -0.072 4.072 21 C -0.222 4.222 22 C -0.069 4.069 23 S 0.123 5.877 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -0.125 -19.852 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.538 4.538 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.300 5.300 14 C 0.048 3.952 15 H 0.068 0.932 16 C -0.180 4.180 17 C -0.245 4.245 18 N -0.189 5.189 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.344 4.344 22 C -0.128 4.128 23 S 0.379 5.621 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.738 -0.149 -19.279 19.357 hybrid contribution -0.824 0.039 0.944 1.253 sum -2.561 -0.110 -18.335 18.513 Atomic orbital electron populations 1.21436 0.96303 0.99297 1.00479 1.21984 0.96198 1.00183 0.99559 1.19048 0.94156 0.89191 0.86263 0.97380 1.21177 1.30512 1.11279 0.90800 0.93433 1.25524 0.95894 0.95867 1.00812 1.69981 1.39688 1.24887 1.21314 0.85744 0.78917 0.78784 0.78939 1.19945 1.21020 1.20284 1.60834 1.03977 1.62766 1.02438 1.20071 0.93125 0.97957 0.84016 0.93187 1.21665 0.96012 0.98758 1.01531 1.26937 1.00975 0.95133 1.01477 1.66086 1.10089 1.25336 1.17371 1.20758 1.01852 0.98726 0.88656 1.20401 0.96195 0.94814 1.01660 1.26212 1.04861 0.99224 1.04062 1.20362 1.02700 1.03320 0.86453 1.83723 1.44118 1.27788 1.06439 0.94304 0.93579 0.93811 0.95726 0.91399 0.93139 0.85065 0.91033 0.92771 0.92862 0.90177 0.91674 0.88160 0.90399 0.88971 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.40 71.98 0.68 -4.43 16 2 C -0.14 -6.62 5.49 30.59 0.17 -6.45 16 3 C 0.22 11.23 2.14 44.17 0.09 11.32 16 4 H 0.01 0.46 7.14 -2.38 -0.02 0.44 16 5 C -0.50 -27.72 7.39 25.60 0.19 -27.54 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 7 C 0.02 0.96 5.28 84.66 0.45 1.41 16 8 N -0.92 -52.42 11.37 21.45 0.24 -52.17 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.67 -29.87 6.00 -477.15 -2.86 -32.73 16 14 C 0.16 6.14 2.91 44.17 0.13 6.27 16 15 H 0.05 1.90 7.11 -2.39 -0.02 1.89 16 16 C -0.12 -4.31 9.38 71.98 0.68 -3.64 16 17 C 0.03 1.11 5.90 88.52 0.52 1.63 16 18 N -0.47 -16.45 10.49 -179.39 -1.88 -18.33 16 19 C 0.03 0.85 6.74 41.52 0.28 1.13 16 20 C -0.07 -1.42 10.06 71.24 0.72 -0.70 16 21 C -0.22 -5.08 6.59 24.64 0.16 -4.92 16 22 C -0.07 -0.92 9.56 71.23 0.68 -0.24 16 23 S 0.12 3.21 23.18 -56.49 -1.31 1.90 16 24 H 0.04 1.57 6.36 -2.39 -0.02 1.56 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 2.08 7.12 -2.39 -0.02 2.07 16 27 H 0.02 1.06 7.40 -2.39 -0.02 1.04 16 28 H 0.07 3.61 6.21 -2.38 -0.01 3.60 16 29 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 30 H 0.33 14.75 6.13 -89.69 -0.55 14.20 16 31 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 2.06 7.45 -2.39 -0.02 2.04 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.32 7.46 -2.38 -0.02 1.30 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.94 8.00 -2.38 -0.02 0.92 16 Total: -1.00 -63.03 326.25 1.44 -61.58 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.49 Total: 19.36 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.74 Total: -26.14 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.50 Total: -103.24 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.31 Total: 1.90 kcal Total: -63.03 1.44 -61.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702017639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.772 kcal (2) G-P(sol) polarization free energy of solvation -63.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds