Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47291 * 2 1 4 4 H 1.08998 * 109.47665 * 179.04648 * 3 2 1 5 5 C 1.50704 * 109.46840 * 299.04122 * 3 2 1 6 6 H 1.08004 * 119.99882 * 119.99674 * 5 3 2 7 7 C 1.37868 * 120.00298 * 300.00110 * 5 3 2 8 8 N 1.31512 * 120.00461 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99948 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46876 * 90.00095 * 9 7 5 11 11 H 1.48503 * 109.47384 * 209.99900 * 9 7 5 12 12 H 1.48499 * 109.47020 * 330.00150 * 9 7 5 13 13 N 1.46897 * 109.47539 * 59.04040 * 3 2 1 14 14 C 1.46901 * 111.00244 * 85.71164 * 13 3 2 15 15 H 1.09000 * 109.46802 * 327.05203 * 14 13 3 16 16 C 1.53004 * 109.46976 * 87.04591 * 14 13 3 17 17 C 1.50690 * 109.47617 * 207.04800 * 14 13 3 18 18 N 1.29030 * 124.91766 * 134.99689 * 17 14 13 19 19 C 1.31780 * 117.12360 * 179.97438 * 18 17 14 20 20 C 1.50704 * 122.74625 * 179.97438 * 19 18 17 21 21 C 1.33641 * 114.50546 * 0.02562 * 19 18 17 22 22 C 1.50700 * 126.04203 * 179.97438 * 21 19 18 23 23 S 1.70978 * 124.91706 * 314.69810 * 17 14 13 24 24 H 1.09006 * 109.47450 * 296.21020 * 1 2 3 25 25 H 1.08997 * 109.47539 * 176.20757 * 1 2 3 26 26 H 1.09004 * 109.47353 * 56.21141 * 1 2 3 27 27 H 1.09004 * 109.47055 * 119.99588 * 2 1 3 28 28 H 1.08997 * 109.47226 * 239.99952 * 2 1 3 29 29 H 0.97003 * 120.00898 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00814 * 209.66918 * 13 3 2 31 31 H 1.08996 * 109.47148 * 180.02562 * 16 14 13 32 32 H 1.09001 * 109.47055 * 300.00575 * 16 14 13 33 33 H 1.09001 * 109.46930 * 60.00096 * 16 14 13 34 34 H 1.08998 * 109.47193 * 90.03327 * 20 19 18 35 35 H 1.09003 * 109.46945 * 210.02818 * 20 19 18 36 36 H 1.08994 * 109.47520 * 330.02632 * 20 19 18 37 37 H 1.08994 * 109.47015 * 89.99515 * 22 21 19 38 38 H 1.08996 * 109.47365 * 209.99916 * 22 21 19 39 39 H 1.09005 * 109.46510 * 329.99884 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0171 5 6 1.5572 2.1460 -1.2422 6 1 0.9347 3.0246 -1.1578 7 6 1.9098 1.6680 -2.4864 8 7 1.4881 2.2815 -3.5704 9 14 2.9868 0.1487 -2.6324 10 1 2.1294 -1.0627 -2.6842 11 1 3.7982 0.2343 -3.8732 12 1 3.8890 0.0666 -1.4557 13 7 1.5316 2.1417 1.1876 14 6 2.4062 1.9161 2.3461 15 1 2.8402 0.9181 2.2847 16 6 3.5253 2.9595 2.3511 17 6 1.6013 2.0367 3.6143 18 7 1.6679 1.2209 4.6117 19 6 0.8930 1.4735 5.6473 20 6 0.8685 0.6045 6.8783 21 6 0.1299 2.5627 5.5160 22 6 -0.8471 3.0890 6.5356 23 16 0.4729 3.2785 3.9429 24 1 -0.3634 0.4539 0.9220 25 1 -0.3634 -1.0254 -0.0680 26 1 -0.3634 0.5715 -0.8541 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.7359 1.9451 -4.4458 30 1 1.4190 3.1279 1.0062 31 1 4.1745 2.7918 3.2104 32 1 4.1075 2.8722 1.4338 33 1 3.0912 3.9575 2.4124 34 1 1.6072 0.9666 7.5934 35 1 -0.1229 0.6418 7.3297 36 1 1.1035 -0.4234 6.6023 37 1 -0.3382 3.7878 7.1995 38 1 -1.6635 3.6009 6.0261 39 1 -1.2461 2.2589 7.1186 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702017641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = 33.411101 kcal Electronic energy + Delta-G solvation = -18691.705910 eV Core-core repulsion = 15953.778004 eV Total energy + Delta-G solvation = -2737.927906 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.76451 -37.26826 -34.18003 -32.52395 -31.58445 -29.72476 -28.79177 -26.38753 -25.58758 -24.14262 -23.14039 -21.22242 -19.49323 -18.54676 -17.65819 -16.60557 -15.55923 -15.09863 -14.87585 -14.15390 -13.80348 -13.70471 -13.24631 -13.11349 -13.03378 -12.82786 -12.72561 -12.66944 -12.37299 -12.07065 -12.00733 -11.68779 -11.18141 -10.98629 -10.84623 -10.61774 -10.52701 -10.25986 -10.05261 -9.34702 -9.34171 -9.01202 -8.94176 -8.61242 -8.36015 -7.65250 -6.12841 -4.12277 0.94180 1.59974 2.06253 2.97488 3.26255 3.35586 3.36874 4.15215 4.36258 4.95975 5.02163 5.07692 5.15689 5.23510 5.32104 5.39661 5.41982 5.53485 5.57072 5.74679 5.79042 5.97442 5.98931 6.10835 6.12097 6.22460 6.33039 6.43158 6.46569 6.73229 6.89770 7.08964 7.18931 7.45957 7.55120 7.79412 8.01785 8.20554 8.53418 8.90799 9.49148 10.99745 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031461 B = 0.005045 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.788946 B = 5548.224503 C = 5664.630261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 C 0.189 3.811 4 H 0.006 0.994 5 C -0.514 4.514 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.668 5.668 14 C 0.151 3.849 15 H 0.101 0.899 16 C -0.174 4.174 17 C 0.089 3.911 18 N -0.483 5.483 19 C 0.061 3.939 20 C -0.075 4.075 21 C -0.254 4.254 22 C -0.068 4.068 23 S 0.139 5.861 24 H 0.052 0.948 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.343 0.657 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 0.781 18.435 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.081 3.919 4 H 0.024 0.976 5 C -0.552 4.552 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.300 5.300 14 C 0.036 3.964 15 H 0.119 0.881 16 C -0.234 4.234 17 C -0.190 4.190 18 N -0.197 5.197 19 C -0.071 4.071 20 C -0.134 4.134 21 C -0.375 4.375 22 C -0.128 4.128 23 S 0.396 5.604 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.504 0.722 17.767 17.845 hybrid contribution 1.303 -0.942 0.181 1.619 sum -0.201 -0.221 17.947 17.950 Atomic orbital electron populations 1.21451 0.95536 0.98330 1.02796 1.21773 0.97472 0.98059 0.97939 1.19591 0.93099 0.91220 0.87998 0.97635 1.20962 1.32663 1.13359 0.88256 0.90244 1.24858 0.95445 0.96677 0.95688 1.69876 1.45274 1.40415 0.97833 0.86894 0.80869 0.83854 0.76877 1.20361 1.22537 1.19324 1.60492 1.48240 1.16746 1.04506 1.20059 0.89627 1.00854 0.85848 0.88110 1.22496 0.99088 0.98891 1.02887 1.27109 0.99522 0.93823 0.98499 1.66106 1.24097 1.28902 1.00605 1.20070 0.95009 0.95922 0.96140 1.20305 1.02136 0.98625 0.92343 1.25661 1.08172 1.02688 1.00964 1.20150 0.96051 1.00997 0.95556 1.83940 1.37833 1.28855 1.09748 0.92890 0.96115 0.91335 0.94974 0.93924 0.92548 0.83757 0.92367 0.90783 0.92237 0.91101 0.91047 0.90893 0.91123 0.91387 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.52 37.16 0.35 -2.31 16 2 C -0.11 -2.55 5.27 -26.73 -0.14 -2.69 16 3 C 0.19 4.29 1.70 -68.86 -0.12 4.17 16 4 H 0.01 0.14 6.32 -51.93 -0.33 -0.19 16 5 C -0.51 -13.62 7.89 -34.44 -0.27 -13.89 16 6 H 0.08 2.28 7.85 -52.48 -0.41 1.86 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.88 21.66 24.38 -169.99 -4.14 17.51 16 10 H -0.28 -6.71 6.86 56.52 0.39 -6.32 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.67 -13.01 5.12 -102.17 -0.52 -13.54 16 14 C 0.15 2.59 2.90 -68.87 -0.20 2.39 16 15 H 0.10 1.86 7.17 -51.93 -0.37 1.48 16 16 C -0.17 -2.60 9.13 37.16 0.34 -2.26 16 17 C 0.09 1.48 6.31 -13.46 -0.08 1.40 16 18 N -0.48 -8.16 10.53 -8.06 -0.08 -8.24 16 19 C 0.06 0.88 6.74 -84.22 -0.57 0.31 16 20 C -0.07 -0.79 10.06 36.01 0.36 -0.43 16 21 C -0.25 -3.33 6.59 -35.92 -0.24 -3.57 16 22 C -0.07 -0.63 10.10 36.01 0.36 -0.27 16 23 S 0.14 2.01 22.97 -107.50 -2.47 -0.46 16 24 H 0.05 1.11 7.70 -51.93 -0.40 0.71 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.62 7.12 -51.93 -0.37 1.25 16 27 H 0.03 0.66 7.52 -51.93 -0.39 0.27 16 28 H 0.04 1.00 3.25 -51.93 -0.17 0.83 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.34 6.61 7.91 -39.29 -0.31 6.30 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.16 7.59 -51.93 -0.39 0.76 16 33 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.60 6.72 -51.93 -0.35 0.25 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.58 6.76 -51.93 -0.35 0.23 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -29.59 320.32 -7.90 -37.49 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.99 Total: 3.31 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.30 Total: -15.13 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.17 Total: -47.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.51 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.47 Total: -0.46 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.59 -7.90 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702017641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.902 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds