Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47291 * 2 1 4 4 H 1.08998 * 109.47665 * 179.04648 * 3 2 1 5 5 C 1.50704 * 109.46840 * 299.04122 * 3 2 1 6 6 H 1.08004 * 119.99882 * 119.99674 * 5 3 2 7 7 C 1.37868 * 120.00298 * 300.00110 * 5 3 2 8 8 N 1.31512 * 120.00461 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99948 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46876 * 90.00095 * 9 7 5 11 11 H 1.48503 * 109.47384 * 209.99900 * 9 7 5 12 12 H 1.48499 * 109.47020 * 330.00150 * 9 7 5 13 13 N 1.46897 * 109.47539 * 59.04040 * 3 2 1 14 14 C 1.46901 * 111.00244 * 85.71164 * 13 3 2 15 15 H 1.09000 * 109.46802 * 327.05203 * 14 13 3 16 16 C 1.53004 * 109.46976 * 87.04591 * 14 13 3 17 17 C 1.50690 * 109.47617 * 207.04800 * 14 13 3 18 18 N 1.29030 * 124.91766 * 134.99689 * 17 14 13 19 19 C 1.31780 * 117.12360 * 179.97438 * 18 17 14 20 20 C 1.50704 * 122.74625 * 179.97438 * 19 18 17 21 21 C 1.33641 * 114.50546 * 0.02562 * 19 18 17 22 22 C 1.50700 * 126.04203 * 179.97438 * 21 19 18 23 23 S 1.70978 * 124.91706 * 314.69810 * 17 14 13 24 24 H 1.09006 * 109.47450 * 296.21020 * 1 2 3 25 25 H 1.08997 * 109.47539 * 176.20757 * 1 2 3 26 26 H 1.09004 * 109.47353 * 56.21141 * 1 2 3 27 27 H 1.09004 * 109.47055 * 119.99588 * 2 1 3 28 28 H 1.08997 * 109.47226 * 239.99952 * 2 1 3 29 29 H 0.97003 * 120.00898 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00814 * 209.66918 * 13 3 2 31 31 H 1.08996 * 109.47148 * 180.02562 * 16 14 13 32 32 H 1.09001 * 109.47055 * 300.00575 * 16 14 13 33 33 H 1.09001 * 109.46930 * 60.00096 * 16 14 13 34 34 H 1.08998 * 109.47193 * 90.03327 * 20 19 18 35 35 H 1.09003 * 109.46945 * 210.02818 * 20 19 18 36 36 H 1.08994 * 109.47520 * 330.02632 * 20 19 18 37 37 H 1.08994 * 109.47015 * 89.99515 * 22 21 19 38 38 H 1.08996 * 109.47365 * 209.99916 * 22 21 19 39 39 H 1.09005 * 109.46510 * 329.99884 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0171 5 6 1.5572 2.1460 -1.2422 6 1 0.9347 3.0246 -1.1578 7 6 1.9098 1.6680 -2.4864 8 7 1.4881 2.2815 -3.5704 9 14 2.9868 0.1487 -2.6324 10 1 2.1294 -1.0627 -2.6842 11 1 3.7982 0.2343 -3.8732 12 1 3.8890 0.0666 -1.4557 13 7 1.5316 2.1417 1.1876 14 6 2.4062 1.9161 2.3461 15 1 2.8402 0.9181 2.2847 16 6 3.5253 2.9595 2.3511 17 6 1.6013 2.0367 3.6143 18 7 1.6679 1.2209 4.6117 19 6 0.8930 1.4735 5.6473 20 6 0.8685 0.6045 6.8783 21 6 0.1299 2.5627 5.5160 22 6 -0.8471 3.0890 6.5356 23 16 0.4729 3.2785 3.9429 24 1 -0.3634 0.4539 0.9220 25 1 -0.3634 -1.0254 -0.0680 26 1 -0.3634 0.5715 -0.8541 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.7359 1.9451 -4.4458 30 1 1.4190 3.1279 1.0062 31 1 4.1745 2.7918 3.2104 32 1 4.1075 2.8722 1.4338 33 1 3.0912 3.9575 2.4124 34 1 1.6072 0.9666 7.5934 35 1 -0.1229 0.6418 7.3297 36 1 1.1035 -0.4234 6.6023 37 1 -0.3382 3.7878 7.1995 38 1 -1.6635 3.6009 6.0261 39 1 -1.2461 2.2589 7.1186 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702017641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = 13.975742 kcal Electronic energy + Delta-G solvation = -18692.548690 eV Core-core repulsion = 15953.778004 eV Total energy + Delta-G solvation = -2738.770686 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88844 -38.85459 -35.72416 -33.99680 -33.28429 -30.72354 -30.19231 -28.17306 -26.66154 -25.32076 -24.96336 -22.59719 -21.16053 -19.76031 -18.89554 -18.40242 -17.34722 -16.39697 -16.05127 -15.71754 -15.34492 -15.07578 -14.77270 -14.60787 -14.27373 -13.88930 -13.86910 -13.81322 -13.68009 -13.43861 -12.94139 -12.90373 -12.80271 -12.53159 -12.45266 -12.17250 -12.08914 -11.92919 -11.85060 -11.26038 -10.96736 -10.71072 -10.52212 -10.06073 -9.44434 -9.23131 -8.28287 -6.30332 -0.17473 0.50730 0.94416 1.31534 1.35277 1.44101 1.85679 2.31758 2.93055 3.08036 3.64202 3.99830 4.07053 4.12999 4.23288 4.26119 4.36307 4.41965 4.62492 4.63479 4.71662 4.72895 4.79770 4.83615 4.93588 4.98446 5.07413 5.08596 5.10268 5.16428 5.30457 5.35865 5.49888 5.59739 5.71171 5.95686 6.44702 6.58837 6.80337 6.89054 7.34669 8.87704 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031461 B = 0.005045 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.788946 B = 5548.224503 C = 5664.630261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C 0.196 3.804 4 H 0.003 0.997 5 C -0.505 4.505 6 H 0.046 0.954 7 C 0.025 3.975 8 N -0.943 5.943 9 Si 0.937 3.063 10 H -0.270 1.270 11 H -0.299 1.299 12 H -0.252 1.252 13 N -0.667 5.667 14 C 0.154 3.846 15 H 0.088 0.912 16 C -0.166 4.166 17 C 0.062 3.938 18 N -0.502 5.502 19 C 0.035 3.965 20 C -0.071 4.071 21 C -0.240 4.240 22 C -0.070 4.070 23 S 0.139 5.861 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.342 0.658 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 0.026 21.095 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.154 4.154 3 C 0.087 3.913 4 H 0.021 0.979 5 C -0.543 4.543 6 H 0.064 0.936 7 C -0.173 4.173 8 N -0.583 5.583 9 Si 0.765 3.235 10 H -0.197 1.197 11 H -0.227 1.227 12 H -0.176 1.176 13 N -0.299 5.299 14 C 0.041 3.959 15 H 0.106 0.894 16 C -0.226 4.226 17 C -0.216 4.216 18 N -0.217 5.217 19 C -0.097 4.097 20 C -0.131 4.131 21 C -0.361 4.361 22 C -0.129 4.129 23 S 0.395 5.605 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.562 -0.039 20.463 20.522 hybrid contribution 1.231 -0.620 -0.521 1.474 sum -0.331 -0.660 19.942 19.955 Atomic orbital electron populations 1.21332 0.95090 0.99189 1.01567 1.21762 0.97869 0.97465 0.98312 1.19383 0.92720 0.91597 0.87599 0.97907 1.21151 1.31071 1.12188 0.89923 0.93563 1.25565 0.96893 0.99457 0.95432 1.70006 1.47419 1.42435 0.98431 0.86027 0.79586 0.80656 0.77226 1.19685 1.22716 1.17567 1.60395 1.49001 1.16441 1.04065 1.19959 0.89914 1.00739 0.85327 0.89435 1.22407 0.98506 0.98691 1.03006 1.26824 1.01020 0.95287 0.98513 1.66105 1.24940 1.29364 1.01324 1.20640 0.95148 0.97129 0.96736 1.20410 1.04075 0.97476 0.91098 1.26196 1.07736 1.01709 1.00464 1.20352 0.95447 1.02159 0.94980 1.83890 1.37143 1.28283 1.11157 0.92616 0.93969 0.94185 0.93172 0.94772 0.92577 0.83874 0.90967 0.91660 0.91415 0.89743 0.88578 0.91609 0.89266 0.90721 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.52 71.98 0.69 -4.13 16 2 C -0.12 -5.02 5.27 30.59 0.16 -4.86 16 3 C 0.20 8.84 1.70 44.17 0.07 8.91 16 4 H 0.00 0.15 6.32 -2.39 -0.02 0.14 16 5 C -0.50 -27.27 7.89 25.60 0.20 -27.07 16 6 H 0.05 2.75 7.85 -2.91 -0.02 2.73 16 7 C 0.02 1.39 5.45 84.65 0.46 1.85 16 8 N -0.94 -57.33 13.96 21.44 0.30 -57.03 16 9 Si 0.94 44.48 24.38 68.60 1.67 46.16 16 10 H -0.27 -12.50 6.86 99.48 0.68 -11.82 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 13 N -0.67 -25.92 5.12 -477.17 -2.44 -28.37 16 14 C 0.15 5.22 2.90 44.17 0.13 5.35 16 15 H 0.09 3.17 7.17 -2.39 -0.02 3.15 16 16 C -0.17 -4.85 9.13 71.98 0.66 -4.19 16 17 C 0.06 1.99 6.31 88.52 0.56 2.55 16 18 N -0.50 -16.32 10.53 -179.41 -1.89 -18.21 16 19 C 0.03 0.92 6.74 41.52 0.28 1.20 16 20 C -0.07 -1.31 10.06 71.24 0.72 -0.59 16 21 C -0.24 -5.69 6.59 24.64 0.16 -5.53 16 22 C -0.07 -1.04 10.10 71.24 0.72 -0.32 16 23 S 0.14 3.84 22.97 -56.49 -1.30 2.54 16 24 H 0.05 2.28 7.70 -2.38 -0.02 2.26 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.89 7.12 -2.38 -0.02 1.87 16 27 H 0.05 1.99 7.52 -2.39 -0.02 1.97 16 28 H 0.03 1.54 3.25 -2.39 -0.01 1.53 16 29 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.34 13.34 7.91 -89.69 -0.71 12.63 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 2.00 7.59 -2.39 -0.02 1.98 16 33 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.24 6.72 -2.39 -0.02 1.22 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.06 6.76 -2.38 -0.02 1.04 16 Total: -1.00 -64.12 320.32 1.40 -62.72 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.26 Total: 19.01 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 4.81 Total: -26.82 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -4.03 Total: -103.61 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.16 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.30 Total: 2.54 kcal Total: -64.12 1.40 -62.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702017641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.693 kcal (2) G-P(sol) polarization free energy of solvation -64.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds