Wall clock time and date at job start Mon Mar 30 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47588 * 2 1 4 4 N 1.40088 * 126.03304 * 269.98089 * 3 2 1 5 5 C 1.30844 * 108.20343 * 179.74075 * 4 3 2 6 6 C 1.39868 * 108.19762 * 0.43091 * 5 4 3 7 7 C 1.50704 * 126.03373 * 179.81933 * 6 5 4 8 8 O 1.42895 * 109.47490 * 334.69522 * 7 6 5 9 9 Si 1.63100 * 113.99934 * 209.99777 * 8 7 6 10 10 C 1.86301 * 109.46959 * 60.00290 * 9 8 7 11 11 C 1.86305 * 109.46672 * 179.97438 * 9 8 7 12 12 C 1.86296 * 109.47132 * 299.99960 * 9 8 7 13 13 C 1.50708 * 109.46844 * 94.69626 * 7 6 5 14 14 N 1.27947 * 119.99709 * 129.99909 * 13 7 6 15 15 Si 1.86800 * 119.99941 * 310.00017 * 13 7 6 16 16 H 1.48498 * 109.46689 * 180.02562 * 15 13 7 17 17 H 1.48505 * 109.46653 * 299.99648 * 15 13 7 18 18 H 1.48492 * 109.47121 * 60.00015 * 15 13 7 19 19 C 1.34940 * 126.04114 * 89.99928 * 3 2 1 20 20 C 1.50702 * 126.12763 * 359.95972 * 19 3 2 21 21 H 1.08999 * 109.47188 * 60.00197 * 1 2 3 22 22 H 1.08998 * 109.47447 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46994 * 300.00192 * 1 2 3 24 24 H 1.09003 * 109.46994 * 239.99808 * 2 1 3 25 25 H 1.08997 * 109.47541 * 120.00204 * 2 1 3 26 26 H 1.07994 * 125.89753 * 180.26124 * 5 4 3 27 27 H 1.09005 * 109.46840 * 214.69335 * 7 6 5 28 28 H 1.08994 * 109.47155 * 60.00060 * 10 9 8 29 29 H 1.09000 * 109.46616 * 179.97438 * 10 9 8 30 30 H 1.08996 * 109.46887 * 299.99872 * 10 9 8 31 31 H 1.09003 * 109.47433 * 60.00614 * 11 9 8 32 32 H 1.09007 * 109.46637 * 180.02562 * 11 9 8 33 33 H 1.08994 * 109.47652 * 300.00068 * 11 9 8 34 34 H 1.08997 * 109.47029 * 60.00457 * 12 9 8 35 35 H 1.09005 * 109.46635 * 180.02562 * 12 9 8 36 36 H 1.09003 * 109.47460 * 299.99685 * 12 9 8 37 37 H 0.97001 * 119.99976 * 359.97438 * 14 13 7 38 38 H 1.09002 * 109.47405 * 270.02885 * 20 19 3 39 39 H 1.09000 * 109.46757 * 30.02425 * 20 19 3 40 40 H 1.08990 * 109.47302 * 150.02182 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2935 2.1580 -1.1329 5 6 2.7034 3.3342 -0.7322 6 6 2.7118 3.3408 0.6664 7 6 3.1202 4.4950 1.5451 8 8 4.0237 5.3410 0.8309 9 14 5.1008 6.1135 1.7814 10 6 6.1298 4.8608 2.6993 11 6 6.2106 7.1748 0.7265 12 6 4.1926 7.1868 3.0037 13 6 1.8979 5.2840 1.9383 14 7 1.6931 5.5763 3.1670 15 14 0.6818 5.8352 0.6318 16 1 -0.4251 6.5896 1.2728 17 1 1.3726 6.7094 -0.3500 18 1 0.1317 4.6453 -0.0658 19 6 2.2831 2.1297 1.0911 20 6 2.1284 1.6949 2.5257 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.9887 4.1568 -1.3712 27 1 3.6104 4.1139 2.4410 28 1 6.6611 4.2329 1.9841 29 1 6.8498 5.3771 3.3341 30 1 5.4807 4.2395 3.3163 31 1 5.6089 7.9079 0.1891 32 1 6.9307 7.6908 1.3617 33 1 6.7419 6.5466 0.0116 34 1 3.5436 6.5655 3.6208 35 1 4.9125 7.7034 3.6385 36 1 3.5906 7.9198 2.4666 37 1 2.3244 5.2897 3.8454 38 1 1.1223 1.9328 2.8711 39 1 2.2931 0.6199 2.5993 40 1 2.8579 2.2174 3.1444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703744060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:56 Heat of formation + Delta-G solvation = 13.876401 kcal Electronic energy + Delta-G solvation = -19721.951727 eV Core-core repulsion = 16889.974570 eV Total energy + Delta-G solvation = -2831.977157 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.39038 -39.07821 -35.75992 -35.45642 -33.43215 -30.92261 -29.60258 -28.84745 -28.44449 -28.43158 -26.45242 -24.60776 -22.45847 -21.36031 -20.45402 -18.05938 -17.62123 -17.47574 -16.23071 -16.09982 -15.74655 -15.38022 -14.73143 -14.44101 -14.32797 -14.21338 -14.14041 -13.87563 -13.72521 -13.49427 -13.41413 -13.31712 -13.24314 -13.15578 -13.03888 -12.78705 -12.69811 -12.61800 -12.34898 -11.91663 -11.82815 -11.45740 -11.27144 -10.74576 -10.69990 -10.15827 -10.12398 -9.21051 0.66424 0.92678 1.32528 1.39629 1.59541 1.76674 1.81227 1.88585 1.98812 1.99771 2.08045 2.41807 3.47881 3.58380 3.73201 3.93127 3.96018 3.98575 4.07456 4.17827 4.30756 4.41283 4.53638 4.55401 4.60334 4.63173 4.66687 4.68695 4.71452 4.74767 4.75816 4.79914 4.87386 5.03601 5.09057 5.34609 5.43992 5.53443 5.58743 5.75071 6.06508 6.79878 6.83595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 N -0.366 5.366 4 N -0.294 5.294 5 C 0.080 3.920 6 C -0.250 4.250 7 C 0.184 3.816 8 O -0.606 6.606 9 Si 1.251 2.749 10 C -0.509 4.509 11 C -0.464 4.464 12 C -0.514 4.514 13 C -0.042 4.042 14 N -0.612 5.612 15 Si 1.054 2.946 16 H -0.252 1.252 17 H -0.236 1.236 18 H -0.245 1.245 19 C 0.099 3.901 20 C -0.100 4.100 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.191 0.809 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.322 0.678 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -2.511 1.801 3.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.148 5.148 4 N -0.114 5.114 5 C -0.106 4.106 6 C -0.262 4.262 7 C 0.123 3.877 8 O -0.563 6.563 9 Si 1.387 2.613 10 C -0.610 4.610 11 C -0.571 4.571 12 C -0.616 4.616 13 C -0.288 4.288 14 N -0.227 5.227 15 Si 0.868 3.132 16 H -0.175 1.175 17 H -0.159 1.159 18 H -0.169 1.169 19 C -0.029 4.029 20 C -0.158 4.158 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.207 0.793 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.557 -2.710 0.454 3.158 hybrid contribution 1.988 -0.177 1.715 2.632 sum 0.432 -2.888 2.169 3.637 Atomic orbital electron populations 1.22193 0.93994 1.03335 1.03412 1.21709 0.95441 0.77708 1.04578 1.48674 1.50890 1.12075 1.03198 1.77472 1.22184 1.04111 1.07591 1.23707 0.97304 0.95567 0.94025 1.19360 1.17096 0.95181 0.94570 1.19834 0.88402 0.87393 0.92042 1.85376 1.52993 1.62648 1.55325 0.77313 0.60756 0.63239 0.59944 1.26978 1.11010 1.13500 1.09554 1.26260 1.10455 1.10160 1.10184 1.27260 1.09156 1.11958 1.13256 1.32335 1.01370 0.93729 1.01382 1.69592 1.33101 1.17145 1.02853 0.83644 0.75318 0.80506 0.73772 1.17480 1.15940 1.16866 1.20698 0.99709 0.91605 0.90908 1.20552 1.03771 1.02535 0.88928 0.91382 0.90275 0.91981 0.88404 0.88940 0.79261 0.91626 0.90799 0.90728 0.91787 0.90566 0.90537 0.90651 0.91511 0.90782 0.90608 0.85871 0.89683 0.90561 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.31 10.24 37.15 0.38 0.70 16 2 C 0.13 -0.18 6.96 -4.05 -0.03 -0.20 16 3 N -0.37 -0.62 3.61 -57.15 -0.21 -0.83 16 4 N -0.29 -1.13 12.58 30.62 0.39 -0.75 16 5 C 0.08 0.21 10.48 -17.36 -0.18 0.03 16 6 C -0.25 -0.39 4.16 -105.05 -0.44 -0.83 16 7 C 0.18 0.06 2.02 -29.03 -0.06 0.00 16 8 O -0.61 -0.21 7.65 -35.23 -0.27 -0.48 16 9 Si 1.25 -1.60 12.68 -169.99 -2.16 -3.76 16 10 C -0.51 0.44 8.56 101.05 0.87 1.31 16 11 C -0.46 0.36 8.65 101.05 0.87 1.24 16 12 C -0.51 0.21 7.98 101.05 0.81 1.02 16 13 C -0.04 -0.04 4.12 -13.89 -0.06 -0.10 16 14 N -0.61 -0.60 11.99 56.23 0.67 0.08 16 15 Si 1.05 1.56 27.84 -169.99 -4.73 -3.17 16 16 H -0.25 -0.58 7.11 56.52 0.40 -0.18 16 17 H -0.24 -0.23 7.11 56.52 0.40 0.17 16 18 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 19 C 0.10 0.08 6.93 -82.27 -0.57 -0.49 16 20 C -0.10 0.23 9.90 36.01 0.36 0.59 16 21 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 22 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 23 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 24 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 25 H 0.09 -0.33 7.05 -51.93 -0.37 -0.70 16 26 H 0.19 0.14 8.06 -52.49 -0.42 -0.28 16 27 H 0.07 -0.09 5.04 -51.93 -0.26 -0.36 16 28 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.06 -0.08 7.10 -51.93 -0.37 -0.45 16 31 H 0.08 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.08 -0.10 7.96 -51.92 -0.41 -0.52 16 33 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 34 H 0.07 -0.02 4.71 -51.93 -0.24 -0.27 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 36 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 37 H 0.32 -0.24 7.11 -40.82 -0.29 -0.53 16 38 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 39 H 0.08 -0.28 7.08 -51.93 -0.37 -0.64 16 40 H 0.08 -0.26 7.25 -51.93 -0.38 -0.64 16 LS Contribution 327.54 15.07 4.94 4.94 Total: 0.00 -4.89 327.54 -5.92 -10.81 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: -6.50 Total: -10.10 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 1.95 Total: 3.26 kcal Atomic # 7 Polarization: -2.35 SS G_CDS: 0.85 Total: -1.50 kcal Atomic # 8 Polarization: -0.21 SS G_CDS: -0.27 Total: -0.48 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -6.89 Total: -6.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -4.89 -5.92 -10.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703744060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.687 kcal (2) G-P(sol) polarization free energy of solvation -4.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds