Wall clock time and date at job start Mon Mar 30 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47588 * 2 1 4 4 N 1.40088 * 126.03304 * 269.98089 * 3 2 1 5 5 C 1.30844 * 108.20343 * 179.74075 * 4 3 2 6 6 C 1.39868 * 108.19762 * 0.43091 * 5 4 3 7 7 C 1.50704 * 126.03373 * 179.81933 * 6 5 4 8 8 O 1.42895 * 109.47490 * 334.69522 * 7 6 5 9 9 Si 1.63100 * 113.99934 * 209.99777 * 8 7 6 10 10 C 1.86301 * 109.46959 * 60.00290 * 9 8 7 11 11 C 1.86305 * 109.46672 * 179.97438 * 9 8 7 12 12 C 1.86296 * 109.47132 * 299.99960 * 9 8 7 13 13 C 1.50708 * 109.46844 * 94.69626 * 7 6 5 14 14 N 1.27947 * 119.99709 * 129.99909 * 13 7 6 15 15 Si 1.86800 * 119.99941 * 310.00017 * 13 7 6 16 16 H 1.48498 * 109.46689 * 180.02562 * 15 13 7 17 17 H 1.48505 * 109.46653 * 299.99648 * 15 13 7 18 18 H 1.48492 * 109.47121 * 60.00015 * 15 13 7 19 19 C 1.34940 * 126.04114 * 89.99928 * 3 2 1 20 20 C 1.50702 * 126.12763 * 359.95972 * 19 3 2 21 21 H 1.08999 * 109.47188 * 60.00197 * 1 2 3 22 22 H 1.08998 * 109.47447 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46994 * 300.00192 * 1 2 3 24 24 H 1.09003 * 109.46994 * 239.99808 * 2 1 3 25 25 H 1.08997 * 109.47541 * 120.00204 * 2 1 3 26 26 H 1.07994 * 125.89753 * 180.26124 * 5 4 3 27 27 H 1.09005 * 109.46840 * 214.69335 * 7 6 5 28 28 H 1.08994 * 109.47155 * 60.00060 * 10 9 8 29 29 H 1.09000 * 109.46616 * 179.97438 * 10 9 8 30 30 H 1.08996 * 109.46887 * 299.99872 * 10 9 8 31 31 H 1.09003 * 109.47433 * 60.00614 * 11 9 8 32 32 H 1.09007 * 109.46637 * 180.02562 * 11 9 8 33 33 H 1.08994 * 109.47652 * 300.00068 * 11 9 8 34 34 H 1.08997 * 109.47029 * 60.00457 * 12 9 8 35 35 H 1.09005 * 109.46635 * 180.02562 * 12 9 8 36 36 H 1.09003 * 109.47460 * 299.99685 * 12 9 8 37 37 H 0.97001 * 119.99976 * 359.97438 * 14 13 7 38 38 H 1.09002 * 109.47405 * 270.02885 * 20 19 3 39 39 H 1.09000 * 109.46757 * 30.02425 * 20 19 3 40 40 H 1.08990 * 109.47302 * 150.02182 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2935 2.1580 -1.1329 5 6 2.7034 3.3342 -0.7322 6 6 2.7118 3.3408 0.6664 7 6 3.1202 4.4950 1.5451 8 8 4.0237 5.3410 0.8309 9 14 5.1008 6.1135 1.7814 10 6 6.1298 4.8608 2.6993 11 6 6.2106 7.1748 0.7265 12 6 4.1926 7.1868 3.0037 13 6 1.8979 5.2840 1.9383 14 7 1.6931 5.5763 3.1670 15 14 0.6818 5.8352 0.6318 16 1 -0.4251 6.5896 1.2728 17 1 1.3726 6.7094 -0.3500 18 1 0.1317 4.6453 -0.0658 19 6 2.2831 2.1297 1.0911 20 6 2.1284 1.6949 2.5257 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.9887 4.1568 -1.3712 27 1 3.6104 4.1139 2.4410 28 1 6.6611 4.2329 1.9841 29 1 6.8498 5.3771 3.3341 30 1 5.4807 4.2395 3.3163 31 1 5.6089 7.9079 0.1891 32 1 6.9307 7.6908 1.3617 33 1 6.7419 6.5466 0.0116 34 1 3.5436 6.5655 3.6208 35 1 4.9125 7.7034 3.6385 36 1 3.5906 7.9198 2.4666 37 1 2.3244 5.2897 3.8454 38 1 1.1223 1.9328 2.8711 39 1 2.2931 0.6199 2.5993 40 1 2.8579 2.2174 3.1444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703744060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:55 Heat of formation + Delta-G solvation = 22.267649 kcal Electronic energy + Delta-G solvation = -19721.587855 eV Core-core repulsion = 16889.974570 eV Total energy + Delta-G solvation = -2831.613285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42818 -39.08569 -35.78993 -35.40763 -33.39098 -30.89199 -29.52470 -28.77424 -28.37175 -28.35602 -26.44003 -24.55779 -22.52163 -21.38301 -20.45348 -18.03263 -17.62478 -17.48518 -16.20191 -16.06034 -15.85881 -15.35463 -14.69725 -14.35740 -14.24370 -14.14098 -13.93605 -13.80262 -13.70004 -13.44120 -13.34578 -13.22994 -13.16496 -13.09796 -12.97657 -12.76510 -12.68758 -12.60932 -12.22984 -12.07510 -11.81555 -11.52781 -11.32395 -10.68015 -10.66979 -10.22053 -10.13853 -9.25366 0.62734 0.88345 1.23184 1.44212 1.61107 1.64040 1.78881 1.89193 1.89681 1.94476 2.09981 2.48278 3.54341 3.68496 3.76901 4.02933 4.07240 4.09739 4.14263 4.33688 4.35790 4.57371 4.64205 4.65074 4.71543 4.75070 4.76130 4.77369 4.78499 4.81124 4.83186 4.89216 4.99516 5.10961 5.19219 5.38363 5.52291 5.59784 5.65160 5.67591 6.11191 6.74755 6.81517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.372 5.372 4 N -0.334 5.334 5 C 0.068 3.932 6 C -0.264 4.264 7 C 0.185 3.815 8 O -0.618 6.618 9 Si 1.284 2.716 10 C -0.514 4.514 11 C -0.476 4.476 12 C -0.522 4.522 13 C -0.038 4.038 14 N -0.619 5.619 15 Si 1.057 2.943 16 H -0.265 1.265 17 H -0.232 1.232 18 H -0.258 1.258 19 C 0.100 3.900 20 C -0.102 4.102 21 H 0.044 0.956 22 H 0.098 0.902 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.196 0.804 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.333 0.667 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 -3.169 3.167 4.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.154 5.154 4 N -0.154 5.154 5 C -0.117 4.117 6 C -0.276 4.276 7 C 0.124 3.876 8 O -0.575 6.575 9 Si 1.419 2.581 10 C -0.615 4.615 11 C -0.582 4.582 12 C -0.623 4.623 13 C -0.285 4.285 14 N -0.236 5.236 15 Si 0.873 3.127 16 H -0.189 1.189 17 H -0.155 1.155 18 H -0.182 1.182 19 C -0.030 4.030 20 C -0.160 4.160 21 H 0.064 0.936 22 H 0.116 0.884 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.213 0.787 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.121 -3.359 1.811 3.977 hybrid contribution 1.822 0.022 1.285 2.229 sum 0.701 -3.336 3.095 4.605 Atomic orbital electron populations 1.22148 0.93765 1.04198 1.02237 1.21983 0.95633 0.76655 1.05822 1.48941 1.50692 1.12843 1.02932 1.77387 1.23672 1.05036 1.09320 1.23928 0.97245 0.95548 0.94989 1.19563 1.17773 0.96037 0.94245 1.19861 0.88270 0.86944 0.92493 1.85370 1.53262 1.62822 1.56053 0.76740 0.59872 0.62427 0.59053 1.27019 1.11232 1.13604 1.09677 1.26391 1.10878 1.10407 1.10479 1.27359 1.09314 1.12056 1.13612 1.32060 1.01415 0.93886 1.01122 1.69551 1.33702 1.17228 1.03083 0.83536 0.75190 0.79835 0.74121 1.18882 1.15488 1.18247 1.21230 0.98385 0.91287 0.92057 1.20717 1.04588 1.03830 0.86846 0.93649 0.88361 0.91971 0.88624 0.86224 0.78743 0.89582 0.91334 0.90335 0.91100 0.90867 0.89926 0.90904 0.91455 0.90302 0.91390 0.84641 0.88943 0.88851 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.60 10.24 71.98 0.74 1.34 16 2 C 0.12 -0.36 6.96 86.38 0.60 0.24 16 3 N -0.37 -1.39 3.61 -334.72 -1.21 -2.60 16 4 N -0.33 -3.04 12.58 -57.02 -0.72 -3.76 16 5 C 0.07 0.44 10.48 85.23 0.89 1.34 16 6 C -0.26 -0.89 4.16 -20.14 -0.08 -0.97 16 7 C 0.18 0.07 2.02 29.11 0.06 0.12 16 8 O -0.62 -0.43 7.65 -148.98 -1.14 -1.57 16 9 Si 1.28 -3.75 12.68 68.60 0.87 -2.88 16 10 C -0.51 1.38 8.56 113.37 0.97 2.36 16 11 C -0.48 0.69 8.65 113.37 0.98 1.67 16 12 C -0.52 0.66 7.98 113.37 0.90 1.57 16 13 C -0.04 -0.07 4.12 88.68 0.37 0.30 16 14 N -0.62 -0.89 11.99 24.11 0.29 -0.60 16 15 Si 1.06 4.25 27.84 68.60 1.91 6.16 16 16 H -0.26 -1.57 7.11 99.48 0.71 -0.87 16 17 H -0.23 -0.70 7.11 99.48 0.71 0.01 16 18 H -0.26 -1.55 7.11 99.48 0.71 -0.84 16 19 C 0.10 0.13 6.93 41.41 0.29 0.42 16 20 C -0.10 0.63 9.90 71.24 0.71 1.34 16 21 H 0.04 0.05 8.14 -2.39 -0.02 0.03 16 22 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 23 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 24 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.12 -1.05 7.05 -2.39 -0.02 -1.06 16 26 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 27 H 0.09 -0.36 5.04 -2.38 -0.01 -0.37 16 28 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 29 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 30 H 0.07 -0.29 7.10 -2.39 -0.02 -0.30 16 31 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 32 H 0.08 -0.24 7.96 -2.38 -0.02 -0.26 16 33 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 34 H 0.07 -0.10 4.71 -2.39 -0.01 -0.11 16 35 H 0.08 -0.18 7.96 -2.38 -0.02 -0.20 16 36 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 37 H 0.33 -0.87 7.11 -92.71 -0.66 -1.53 16 38 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.09 -0.89 7.08 -2.39 -0.02 -0.91 16 40 H 0.09 -0.80 7.25 -2.39 -0.02 -0.82 16 Total: 0.00 -12.17 327.54 7.54 -4.63 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: 1.12 Total: -9.11 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.42 Total: 9.72 kcal Atomic # 7 Polarization: -5.32 SS G_CDS: -1.64 Total: -6.95 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: -1.14 Total: -1.57 kcal Atomic # 14 Polarization: 0.50 SS G_CDS: 2.78 Total: 3.28 kcal Total: -12.17 7.54 -4.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703744060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.900 kcal (2) G-P(sol) polarization free energy of solvation -12.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds