Wall clock time and date at job start Mon Mar 30 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47355 * 2 1 4 4 H 1.09001 * 109.46773 * 302.46440 * 3 2 1 5 5 C 1.50701 * 109.47113 * 182.46679 * 3 2 1 6 6 H 1.08007 * 119.99533 * 239.99824 * 5 3 2 7 7 C 1.37873 * 120.00323 * 60.00019 * 5 3 2 8 8 N 1.31522 * 119.99753 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00152 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46732 * 89.99867 * 9 7 5 11 11 H 1.48495 * 109.47061 * 209.99641 * 9 7 5 12 12 H 1.48497 * 109.47185 * 330.00086 * 9 7 5 13 13 N 1.46894 * 109.46983 * 62.46405 * 3 2 1 14 14 C 1.46898 * 111.00038 * 64.34909 * 13 3 2 15 15 C 1.46907 * 110.99932 * 188.30212 * 13 3 2 16 16 C 1.50701 * 109.46928 * 164.21713 * 15 13 3 17 17 N 1.29031 * 124.91005 * 90.00198 * 16 15 13 18 18 C 1.31785 * 117.12363 * 179.97438 * 17 16 15 19 19 C 1.50697 * 122.75376 * 180.02562 * 18 17 16 20 20 C 1.33645 * 114.49534 * 0.02562 * 18 17 16 21 21 C 1.50704 * 126.03328 * 180.02562 * 20 18 17 22 22 S 1.70969 * 124.91884 * 269.69485 * 16 15 13 23 23 H 1.08994 * 109.47117 * 174.95999 * 1 2 3 24 24 H 1.09001 * 109.47178 * 294.97063 * 1 2 3 25 25 H 1.09008 * 109.46912 * 54.96504 * 1 2 3 26 26 H 1.09001 * 109.47415 * 240.00196 * 2 1 3 27 27 H 1.08999 * 109.47467 * 119.99867 * 2 1 3 28 28 H 0.97004 * 119.99764 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47194 * 183.95433 * 14 13 3 30 30 H 1.09005 * 109.47288 * 303.95191 * 14 13 3 31 31 H 1.08999 * 109.47120 * 63.95344 * 14 13 3 32 32 H 1.08996 * 109.46846 * 284.22110 * 15 13 3 33 33 H 1.08995 * 109.46941 * 44.22264 * 15 13 3 34 34 H 1.09004 * 109.46702 * 89.97511 * 19 18 17 35 35 H 1.08995 * 109.47380 * 209.97387 * 19 18 17 36 36 H 1.08999 * 109.47166 * 329.98006 * 19 18 17 37 37 H 1.08996 * 109.47295 * 89.99823 * 21 20 18 38 38 H 1.08999 * 109.46612 * 209.99943 * 21 20 18 39 39 H 1.09001 * 109.46847 * 329.99280 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6411 1.9689 -0.8671 5 6 3.5458 1.4429 -0.0612 6 1 4.1184 1.8991 0.7330 7 6 4.1925 0.8610 -1.1308 8 7 3.4953 0.3051 -2.0975 9 14 6.0590 0.8621 -1.2069 10 1 6.5821 -0.3599 -0.5447 11 1 6.4965 0.8821 -2.6258 12 1 6.5821 2.0649 -0.5105 13 7 1.5996 2.1176 1.2281 14 6 2.2025 1.4969 2.4152 15 6 1.9000 3.5547 1.1755 16 6 1.1109 4.2720 2.2404 17 7 1.5192 4.4824 3.4462 18 6 0.7016 5.1281 4.2533 19 6 1.0494 5.4422 5.6856 20 6 -0.4612 5.4816 3.6974 21 6 -1.5800 6.2259 4.3796 22 16 -0.4516 4.9312 2.0236 23 1 -0.3633 -1.0236 -0.0903 24 1 -0.3633 0.4338 0.9316 25 1 -0.3633 0.5900 -0.8415 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9503 -0.1046 -2.8499 29 1 1.8058 1.9699 3.3135 30 1 1.9647 0.4332 2.4294 31 1 3.2842 1.6269 2.3834 32 1 2.9653 3.7097 1.3462 33 1 1.6281 3.9471 0.1957 34 1 1.5467 6.4109 5.7346 35 1 0.1381 5.4710 6.2828 36 1 1.7150 4.6720 6.0751 37 1 -1.4365 7.2983 4.2476 38 1 -2.5332 5.9301 3.9414 39 1 -1.5795 5.9874 5.4432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704754310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:40 Heat of formation + Delta-G solvation = 36.108343 kcal Electronic energy + Delta-G solvation = -18703.011811 eV Core-core repulsion = 15965.200867 eV Total energy + Delta-G solvation = -2737.810944 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68811 -37.25659 -33.70389 -32.41155 -31.21243 -29.70189 -27.84948 -26.79075 -25.07144 -24.13035 -22.79293 -21.18127 -18.99716 -18.51349 -17.60109 -16.39440 -15.52166 -14.91205 -14.71441 -14.21617 -13.78668 -13.53137 -13.12120 -13.01767 -12.97120 -12.73601 -12.46129 -12.07856 -11.99020 -11.91411 -11.61069 -11.17772 -10.93701 -10.89171 -10.81645 -10.69426 -10.48174 -10.01884 -9.71432 -9.57867 -9.25859 -9.08439 -8.90410 -8.38979 -8.31663 -7.21799 -6.01162 -4.14306 0.99687 1.65422 2.09865 3.05391 3.26754 3.34149 3.37488 4.36831 4.40616 5.00154 5.11245 5.15541 5.25797 5.35655 5.44421 5.45400 5.62318 5.77949 5.82462 5.89072 6.16733 6.24354 6.37232 6.42803 6.45221 6.52918 6.64938 6.68822 6.87645 7.10122 7.16101 7.30544 7.56567 7.74464 7.90937 8.10348 8.12680 8.21895 8.42118 8.94712 9.53693 10.98536 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.005159 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.561511 B = 5425.738667 C = 5919.380394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.040 0.960 5 C -0.546 4.546 6 H 0.058 0.942 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.531 5.531 14 C 0.036 3.964 15 C 0.133 3.867 16 C 0.089 3.911 17 N -0.476 5.476 18 C 0.062 3.938 19 C -0.075 4.075 20 C -0.252 4.252 21 C -0.067 4.067 22 S 0.120 5.880 23 H 0.025 0.975 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 9.182 10.168 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.109 3.891 4 H 0.058 0.942 5 C -0.585 4.585 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.256 5.256 14 C -0.113 4.113 15 C 0.002 3.998 16 C -0.190 4.190 17 N -0.191 5.191 18 C -0.070 4.070 19 C -0.134 4.134 20 C -0.374 4.374 21 C -0.127 4.127 22 S 0.377 5.623 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.144 8.876 9.280 15.764 hybrid contribution 2.227 0.120 0.627 2.317 sum -6.917 8.996 9.906 15.064 Atomic orbital electron populations 1.21703 0.98813 0.98417 1.00549 1.21605 0.92206 0.98871 1.02163 1.19355 0.92896 0.91130 0.85752 0.94245 1.21752 0.92558 1.37742 1.06480 0.92372 1.24891 0.97992 0.94921 0.95446 1.69876 1.35030 1.37503 1.09898 0.86671 0.86157 0.78462 0.77188 1.20680 1.21196 1.20012 1.62467 1.58280 0.99495 1.05312 1.22197 0.97835 0.99076 0.92163 1.20498 0.96597 0.90076 0.92678 1.27300 0.95873 1.00039 0.95785 1.66205 1.34343 1.16114 1.02462 1.20126 0.90036 0.98945 0.97903 1.20306 1.01916 1.02128 0.89080 1.25593 1.01916 1.11829 0.98013 1.20140 0.94234 0.98657 0.99630 1.83898 1.18326 1.50780 1.09346 0.95566 0.93595 0.94130 0.88855 0.94687 0.92856 0.93719 0.92129 0.94899 0.91471 0.89475 0.91096 0.91132 0.90859 0.91168 0.91514 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.71 37.16 0.36 -2.42 16 2 C -0.11 -2.58 5.06 -26.73 -0.14 -2.71 16 3 C 0.21 5.17 1.73 -68.86 -0.12 5.05 16 4 H 0.04 1.04 7.90 -51.93 -0.41 0.63 16 5 C -0.55 -14.32 7.30 -34.44 -0.25 -14.57 16 6 H 0.06 1.55 5.89 -52.48 -0.31 1.24 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 8 N -0.88 -24.40 11.30 55.43 0.63 -23.77 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.53 -11.25 4.11 -237.73 -0.98 -12.23 16 14 C 0.04 0.75 8.73 60.06 0.52 1.27 16 15 C 0.13 2.62 5.10 -4.97 -0.03 2.60 16 16 C 0.09 1.58 6.25 -13.45 -0.08 1.50 16 17 N -0.48 -8.50 9.87 -8.06 -0.08 -8.58 16 18 C 0.06 0.93 6.74 -84.22 -0.57 0.36 16 19 C -0.07 -0.84 10.06 36.00 0.36 -0.48 16 20 C -0.25 -3.41 6.59 -35.92 -0.24 -3.65 16 21 C -0.07 -0.63 10.10 36.01 0.36 -0.27 16 22 S 0.12 1.80 23.18 -107.50 -2.49 -0.69 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.04 0.90 7.83 -51.93 -0.41 0.50 16 25 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.09 2.43 6.01 -51.93 -0.31 2.12 16 27 H 0.03 0.82 6.31 -51.93 -0.33 0.49 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.04 0.89 6.96 -51.93 -0.36 0.53 16 30 H 0.06 1.25 6.19 -51.93 -0.32 0.93 16 31 H 0.03 0.72 6.33 -51.93 -0.33 0.40 16 32 H 0.07 1.42 7.41 -51.93 -0.38 1.04 16 33 H 0.09 1.67 7.84 -51.93 -0.41 1.26 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.62 6.72 -51.93 -0.35 0.27 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.59 6.76 -51.93 -0.35 0.24 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -28.06 321.30 -8.94 -37.01 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.94 Total: -0.98 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 0.10 Total: -11.54 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.43 Total: -44.58 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.49 Total: -0.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.06 -8.94 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704754310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.117 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds