Wall clock time and date at job start Mon Mar 30 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.29031 * 124.91620 * 119.71617 * 4 2 1 6 6 C 1.31783 * 117.12504 * 179.81258 * 5 4 2 7 7 C 1.50695 * 122.75219 * 180.22834 * 6 5 4 8 8 N 1.46905 * 109.46850 * 275.29618 * 7 6 5 9 9 C 1.46902 * 110.99639 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47502 * 325.00124 * 9 8 7 11 11 C 1.52996 * 109.47103 * 85.00252 * 9 8 7 12 12 C 1.52999 * 109.47222 * 205.00055 * 9 8 7 13 13 C 1.50707 * 109.47050 * 64.99919 * 12 9 8 14 14 H 1.07995 * 119.99806 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99707 * 179.97438 * 13 12 9 16 16 N 1.31514 * 120.00265 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99717 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47087 * 90.00019 * 17 15 13 19 19 H 1.48501 * 109.47135 * 210.00264 * 17 15 13 20 20 H 1.48506 * 109.47283 * 330.00221 * 17 15 13 21 21 C 1.33646 * 114.49875 * 0.47947 * 6 5 4 22 22 S 1.70972 * 124.91751 * 300.02763 * 4 2 1 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09001 * 109.47333 * 35.29384 * 7 6 5 31 31 H 1.09000 * 109.47398 * 155.29737 * 7 6 5 32 32 H 1.00898 * 111.00169 * 56.04771 * 8 7 6 33 33 H 1.09006 * 109.47420 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.47358 * 299.99579 * 11 9 8 35 35 H 1.09000 * 109.47147 * 59.99994 * 11 9 8 36 36 H 1.09002 * 109.47542 * 185.00326 * 12 9 8 37 37 H 1.09006 * 109.47379 * 305.00427 * 12 9 8 38 38 H 0.97002 * 119.99591 * 179.97438 * 16 15 13 39 39 H 1.07994 * 126.03709 * 179.78402 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7731 -1.7669 1.2225 6 6 3.1280 -2.2606 2.3917 7 6 3.9943 -3.4859 2.5302 8 7 3.1557 -4.6896 2.4539 9 6 3.9682 -5.9064 2.5849 10 1 4.9359 -5.7502 2.1083 11 6 4.1752 -6.2244 4.0670 12 6 3.2493 -7.0751 1.9081 13 6 3.1545 -6.8165 0.4264 14 1 3.5664 -5.9095 0.0092 15 6 2.5431 -7.7384 -0.3965 16 7 2.0420 -8.8431 0.1115 17 14 2.4263 -7.4182 -2.2332 18 1 3.6235 -7.9780 -2.9103 19 1 1.2040 -8.0670 -2.7720 20 1 2.3585 -5.9549 -2.4772 21 6 2.6524 -1.5887 3.4445 22 16 1.6972 -0.2376 2.8389 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 4.7297 -3.5038 1.7258 31 1 4.5077 -3.4611 3.4914 32 1 2.6198 -4.7034 1.5991 33 1 4.7777 -7.1275 4.1643 34 1 4.6875 -5.3918 4.5492 35 1 3.2074 -6.3807 4.5437 36 1 3.8079 -7.9949 2.0815 37 1 2.2467 -7.1751 2.3242 38 1 1.6115 -9.4914 -0.4675 39 1 2.8237 -1.8307 4.4829 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705581476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:18 Heat of formation + Delta-G solvation = 18.113062 kcal Electronic energy + Delta-G solvation = -18117.987913 eV Core-core repulsion = 15379.396635 eV Total energy + Delta-G solvation = -2738.591278 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.84836 -36.65002 -35.56902 -32.78316 -31.20698 -29.04910 -27.39793 -27.36448 -25.64634 -24.22055 -22.78585 -20.79969 -19.68573 -19.33042 -17.35699 -16.30488 -15.82180 -15.08602 -14.99515 -14.45543 -14.34467 -14.09379 -13.79445 -13.15124 -12.96233 -12.75672 -12.40795 -12.16396 -11.81757 -11.68537 -11.60634 -11.48276 -11.37889 -11.19092 -11.09324 -10.84341 -10.57283 -10.50002 -10.18574 -9.49709 -9.27889 -9.23224 -9.04590 -8.60148 -8.35390 -7.64544 -5.99144 -4.01732 0.84132 1.46519 1.84211 2.94506 3.33214 3.39489 3.44385 4.00121 4.47604 4.68612 4.87932 4.91183 5.13123 5.30562 5.36659 5.38052 5.42438 5.46707 5.56478 5.62890 5.77561 5.83445 5.97056 5.99539 6.03608 6.12244 6.23279 6.31338 6.33759 6.53681 6.93698 6.96049 7.52470 7.67225 7.93715 7.99760 8.05377 8.28247 8.40891 9.04318 9.62569 11.11769 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.005316 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.991754 B = 5265.705245 C = 6588.605652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.022 4.022 3 C -0.145 4.145 4 C 0.058 3.942 5 N -0.462 5.462 6 C 0.083 3.917 7 C 0.131 3.869 8 N -0.677 5.677 9 C 0.087 3.913 10 H 0.031 0.969 11 C -0.135 4.135 12 C 0.021 3.979 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.243 4.243 22 S 0.094 5.906 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.359 0.641 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 19.786 4.520 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.221 4.221 5 N -0.176 5.176 6 C -0.049 4.049 7 C -0.001 4.001 8 N -0.312 5.312 9 C -0.022 4.022 10 H 0.049 0.951 11 C -0.193 4.193 12 C -0.016 4.016 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.382 4.382 22 S 0.348 5.652 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.181 0.819 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.244 20.197 5.096 20.867 hybrid contribution 0.870 -0.793 -1.743 2.103 sum -0.375 19.404 3.353 19.695 Atomic orbital electron populations 1.21922 0.93180 1.03032 1.02396 1.19820 0.96148 0.95235 0.93187 1.21909 1.01699 0.94243 1.02475 1.27024 1.00030 0.96533 0.98522 1.66117 1.12984 1.09685 1.28841 1.20315 1.00120 0.98385 0.86048 1.20455 0.92573 0.86137 1.00929 1.60665 1.25532 0.99864 1.45127 1.21647 0.95057 0.91129 0.94412 0.95099 1.21799 1.01001 0.99430 0.97061 1.19279 0.96070 0.91778 0.94508 1.21189 1.37247 1.04939 0.92694 0.92927 1.24970 0.95369 0.95138 0.98569 1.69965 1.38475 1.09426 1.35261 0.86647 0.77458 0.78509 0.85769 1.20742 1.21222 1.19774 1.26773 1.06492 1.00499 1.04460 1.83655 1.49627 1.29417 1.02475 0.92302 0.91690 0.91301 0.88060 0.92295 0.92099 0.91304 0.93993 0.90299 0.81911 0.93218 0.94521 0.92639 0.95950 0.95626 0.93009 0.80697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.09 37.16 0.34 -1.06 16 2 C -0.02 -0.24 3.35 -91.78 -0.31 -0.55 16 3 C -0.14 -1.22 9.09 37.16 0.34 -0.88 16 4 C 0.06 0.80 6.03 -13.46 -0.08 0.72 16 5 N -0.46 -7.92 10.53 -8.06 -0.08 -8.01 16 6 C 0.08 1.36 6.25 -84.22 -0.53 0.84 16 7 C 0.13 2.27 5.92 -4.98 -0.03 2.24 16 8 N -0.68 -13.77 6.30 -107.99 -0.68 -14.45 16 9 C 0.09 1.85 2.59 -67.71 -0.18 1.67 16 10 H 0.03 0.67 7.80 -51.93 -0.40 0.27 16 11 C -0.13 -2.44 9.41 37.16 0.35 -2.09 16 12 C 0.02 0.55 4.57 -27.88 -0.13 0.42 16 13 C -0.52 -14.78 8.12 -34.44 -0.28 -15.06 16 14 H 0.05 1.47 7.49 -52.49 -0.39 1.08 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.24 -3.36 11.11 29.12 0.32 -3.04 16 22 S 0.09 1.12 22.53 -107.50 -2.42 -1.30 16 23 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 0.46 7.93 -51.93 -0.41 0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.08 1.20 7.39 -51.93 -0.38 0.81 16 32 H 0.36 8.29 7.20 -39.29 -0.28 8.00 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -30.91 335.41 -9.15 -40.06 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.46 Total: 2.97 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.28 Total: -15.11 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.03 Total: -48.70 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.42 Total: -1.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.91 -9.15 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705581476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.172 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds