Wall clock time and date at job start Mon Mar 30 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.29031 * 124.91620 * 119.71617 * 4 2 1 6 6 C 1.31783 * 117.12504 * 179.81258 * 5 4 2 7 7 C 1.50695 * 122.75219 * 180.22834 * 6 5 4 8 8 N 1.46905 * 109.46850 * 275.29618 * 7 6 5 9 9 C 1.46902 * 110.99639 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47502 * 325.00124 * 9 8 7 11 11 C 1.52996 * 109.47103 * 85.00252 * 9 8 7 12 12 C 1.52999 * 109.47222 * 205.00055 * 9 8 7 13 13 C 1.50707 * 109.47050 * 64.99919 * 12 9 8 14 14 H 1.07995 * 119.99806 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99707 * 179.97438 * 13 12 9 16 16 N 1.31514 * 120.00265 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99717 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47087 * 90.00019 * 17 15 13 19 19 H 1.48501 * 109.47135 * 210.00264 * 17 15 13 20 20 H 1.48506 * 109.47283 * 330.00221 * 17 15 13 21 21 C 1.33646 * 114.49875 * 0.47947 * 6 5 4 22 22 S 1.70972 * 124.91751 * 300.02763 * 4 2 1 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09001 * 109.47333 * 35.29384 * 7 6 5 31 31 H 1.09000 * 109.47398 * 155.29737 * 7 6 5 32 32 H 1.00898 * 111.00169 * 56.04771 * 8 7 6 33 33 H 1.09006 * 109.47420 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.47358 * 299.99579 * 11 9 8 35 35 H 1.09000 * 109.47147 * 59.99994 * 11 9 8 36 36 H 1.09002 * 109.47542 * 185.00326 * 12 9 8 37 37 H 1.09006 * 109.47379 * 305.00427 * 12 9 8 38 38 H 0.97002 * 119.99591 * 179.97438 * 16 15 13 39 39 H 1.07994 * 126.03709 * 179.78402 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7731 -1.7669 1.2225 6 6 3.1280 -2.2606 2.3917 7 6 3.9943 -3.4859 2.5302 8 7 3.1557 -4.6896 2.4539 9 6 3.9682 -5.9064 2.5849 10 1 4.9359 -5.7502 2.1083 11 6 4.1752 -6.2244 4.0670 12 6 3.2493 -7.0751 1.9081 13 6 3.1545 -6.8165 0.4264 14 1 3.5664 -5.9095 0.0092 15 6 2.5431 -7.7384 -0.3965 16 7 2.0420 -8.8431 0.1115 17 14 2.4263 -7.4182 -2.2332 18 1 3.6235 -7.9780 -2.9103 19 1 1.2040 -8.0670 -2.7720 20 1 2.3585 -5.9549 -2.4772 21 6 2.6524 -1.5887 3.4445 22 16 1.6972 -0.2376 2.8389 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 4.7297 -3.5038 1.7258 31 1 4.5077 -3.4611 3.4914 32 1 2.6198 -4.7034 1.5991 33 1 4.7777 -7.1275 4.1643 34 1 4.6875 -5.3918 4.5492 35 1 3.2074 -6.3807 4.5437 36 1 3.8079 -7.9949 2.0815 37 1 2.2467 -7.1751 2.3242 38 1 1.6115 -9.4914 -0.4675 39 1 2.8237 -1.8307 4.4829 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705581476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:18 Heat of formation + Delta-G solvation = -1.721550 kcal Electronic energy + Delta-G solvation = -18118.848006 eV Core-core repulsion = 15379.396635 eV Total energy + Delta-G solvation = -2739.451372 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97262 -38.22668 -36.55281 -34.84752 -32.74344 -30.34964 -29.30215 -28.09485 -26.89041 -25.53997 -24.67960 -21.72963 -21.17920 -20.70469 -18.57835 -18.39317 -17.05107 -16.58816 -16.48386 -16.07267 -15.51025 -15.19903 -15.07182 -14.57383 -14.09125 -13.84957 -13.64601 -13.55310 -13.28622 -13.22578 -13.04146 -12.84312 -12.61141 -12.55094 -12.42153 -12.19586 -12.17494 -12.04149 -11.87247 -11.27987 -11.04461 -10.60454 -10.56277 -10.32859 -9.68417 -9.25104 -8.22502 -6.32401 -0.21123 0.46210 0.77858 1.35131 1.36062 1.47533 1.78084 2.37408 3.02823 3.09734 3.56082 3.84916 4.02666 4.12236 4.13463 4.28855 4.35019 4.50922 4.55030 4.62238 4.70769 4.73320 4.81730 4.89727 4.92224 5.01276 5.05084 5.19263 5.20299 5.27539 5.30716 5.32968 5.46555 5.51579 5.81297 6.17889 6.33829 6.47899 6.81993 6.87480 7.36077 8.88999 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.005316 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.991754 B = 5265.705245 C = 6588.605652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 C -0.139 4.139 4 C 0.041 3.959 5 N -0.510 5.510 6 C 0.053 3.947 7 C 0.136 3.864 8 N -0.677 5.677 9 C 0.093 3.907 10 H 0.026 0.974 11 C -0.126 4.126 12 C 0.028 3.972 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.007 3.993 16 N -0.928 5.928 17 Si 0.956 3.044 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.270 1.270 21 C -0.246 4.246 22 S 0.165 5.835 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.103 0.897 32 H 0.340 0.660 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.000 1.000 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 22.194 4.835 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.049 4.049 3 C -0.197 4.197 4 C -0.237 4.237 5 N -0.225 5.225 6 C -0.078 4.078 7 C 0.004 3.996 8 N -0.309 5.309 9 C -0.016 4.016 10 H 0.044 0.956 11 C -0.183 4.183 12 C -0.009 4.009 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.781 3.219 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.195 1.195 21 C -0.385 4.385 22 S 0.420 5.580 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.018 0.982 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.505 22.625 5.429 23.315 hybrid contribution 0.917 -1.473 -1.800 2.500 sum -0.588 21.152 3.629 21.469 Atomic orbital electron populations 1.21919 0.91966 1.02155 1.04114 1.19989 0.97073 0.96319 0.91472 1.21888 1.01184 0.92549 1.04067 1.27563 0.99286 0.96001 1.00817 1.66095 1.14939 1.11512 1.29923 1.20198 1.01789 0.98931 0.86920 1.20459 0.92152 0.85448 1.01495 1.60726 1.25792 1.00678 1.43687 1.21495 0.93964 0.89938 0.96201 0.95644 1.21702 1.01260 1.00935 0.94451 1.19131 0.94664 0.93002 0.94091 1.21483 1.37042 1.04751 0.93993 0.93238 1.25828 0.94984 0.94880 1.03402 1.70081 1.39292 1.10352 1.37047 0.85577 0.77860 0.78398 0.80015 1.19743 1.20461 1.19496 1.27116 1.05654 1.00734 1.05029 1.83330 1.47613 1.27186 0.99881 0.91127 0.93811 0.89066 0.89717 0.91196 0.92899 0.89208 0.95690 0.87862 0.84180 0.92628 0.91481 0.93124 0.98201 0.98470 0.92743 0.78545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.09 71.98 0.65 -1.82 16 2 C -0.03 -0.55 3.35 -11.54 -0.04 -0.59 16 3 C -0.14 -2.03 9.09 71.98 0.65 -1.38 16 4 C 0.04 1.11 6.03 88.52 0.53 1.65 16 5 N -0.51 -17.57 10.53 -179.41 -1.89 -19.46 16 6 C 0.05 1.71 6.25 41.52 0.26 1.97 16 7 C 0.14 4.68 5.92 85.55 0.51 5.18 16 8 N -0.68 -27.87 6.30 -495.58 -3.12 -30.99 16 9 C 0.09 4.03 2.59 44.91 0.12 4.15 16 10 H 0.03 1.12 7.80 -2.39 -0.02 1.10 16 11 C -0.13 -4.41 9.41 71.98 0.68 -3.73 16 12 C 0.03 1.54 4.57 29.85 0.14 1.68 16 13 C -0.53 -31.10 8.12 25.60 0.21 -30.90 16 14 H 0.05 2.85 7.49 -2.91 -0.02 2.83 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 17 Si 0.96 45.94 29.54 68.60 2.03 47.96 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 21 C -0.25 -6.33 11.11 66.78 0.74 -5.59 16 22 S 0.16 3.52 22.53 -56.49 -1.27 2.25 16 23 H 0.07 1.03 7.93 -2.39 -0.02 1.02 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 25 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 0.87 7.93 -2.39 -0.02 0.85 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.02 0.93 8.05 -2.39 -0.02 0.91 16 31 H 0.10 2.96 7.39 -2.39 -0.02 2.94 16 32 H 0.34 16.22 7.20 -89.70 -0.65 15.57 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.07 1.94 7.45 -2.39 -0.02 1.92 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.20 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -68.40 335.41 1.31 -67.09 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.37 Total: 18.66 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.91 Total: -28.47 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.73 Total: -107.49 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.27 Total: 2.25 kcal Total: -68.40 1.31 -67.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705581476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.366 kcal (2) G-P(sol) polarization free energy of solvation -68.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds