Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 C 1.50698 * 109.47208 * 120.00338 * 2 1 3 5 5 N 1.29024 * 124.91473 * 119.99603 * 4 2 1 6 6 C 1.31779 * 117.12417 * 180.02562 * 5 4 2 7 7 C 1.50699 * 122.75042 * 179.97438 * 6 5 4 8 8 N 1.46893 * 109.47125 * 274.99730 * 7 6 5 9 9 C 1.46904 * 111.00244 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47164 * 35.00209 * 9 8 7 11 11 C 1.53004 * 109.47219 * 275.00615 * 9 8 7 12 12 C 1.53002 * 109.47145 * 155.00252 * 9 8 7 13 13 C 1.50696 * 109.46919 * 295.00022 * 12 9 8 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 12 9 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 12 9 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47035 * 60.00183 * 17 15 13 19 19 H 1.48503 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 299.99939 * 17 15 13 21 21 C 1.33641 * 114.50129 * 0.23016 * 6 5 4 22 22 S 1.70975 * 124.91615 * 299.99849 * 4 2 1 23 23 H 1.08996 * 109.47227 * 299.99738 * 1 2 3 24 24 H 1.09000 * 109.47310 * 59.99542 * 1 2 3 25 25 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46800 * 240.00736 * 2 1 3 27 27 H 1.08995 * 109.46874 * 60.00622 * 3 2 1 28 28 H 1.09004 * 109.46813 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47534 * 300.00023 * 3 2 1 30 30 H 1.09010 * 109.47070 * 154.99838 * 7 6 5 31 31 H 1.08997 * 109.47616 * 35.00420 * 7 6 5 32 32 H 1.00898 * 111.00298 * 56.04995 * 8 7 6 33 33 H 1.09001 * 109.47356 * 59.99403 * 11 9 8 34 34 H 1.09000 * 109.47210 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.46722 * 299.99865 * 11 9 8 36 36 H 1.09000 * 109.46497 * 175.00287 * 12 9 8 37 37 H 1.08999 * 109.46623 * 55.00351 * 12 9 8 38 38 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 39 39 H 1.07999 * 126.04011 * 179.76681 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7772 -1.7640 1.2224 6 6 3.1278 -2.2607 2.3916 7 6 3.9936 -3.4864 2.5301 8 7 3.1545 -4.6897 2.4547 9 6 3.9665 -5.9069 2.5856 10 1 4.7881 -5.7228 3.2779 11 6 4.5301 -6.2937 1.2167 12 6 3.0955 -7.0461 3.1191 13 6 2.6407 -6.7178 4.5178 14 1 2.9429 -5.7898 4.9802 15 6 1.8395 -7.6029 5.2077 16 7 1.4768 -8.7359 4.6470 17 14 1.2762 -7.1964 6.9417 18 1 0.4881 -5.9379 6.9239 19 1 0.4308 -8.3021 7.4595 20 1 2.4615 -7.0259 7.8200 21 6 2.6482 -1.5917 3.4444 22 16 1.6977 -0.2372 2.8389 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 4.5076 -3.4615 3.4911 31 1 4.7286 -3.5049 1.7255 32 1 2.6181 -4.7035 1.6002 33 1 5.1505 -5.4821 0.8366 34 1 5.1322 -7.1971 1.3138 35 1 3.7085 -6.4778 0.5245 36 1 3.6739 -7.9698 3.1325 37 1 2.2258 -7.1711 2.4741 38 1 1.7695 -8.9471 3.7466 39 1 2.8154 -1.8366 4.4828 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705581477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = 18.625999 kcal Electronic energy + Delta-G solvation = -18049.648616 eV Core-core repulsion = 15311.079580 eV Total energy + Delta-G solvation = -2738.569036 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90186 -36.83213 -35.67110 -33.01190 -31.20171 -29.02783 -27.47725 -26.87802 -25.69731 -24.20220 -22.72842 -20.90670 -20.06006 -19.56472 -17.41732 -16.66012 -15.81094 -15.23777 -14.76752 -14.36140 -14.26576 -13.89048 -13.60388 -13.19864 -13.11123 -12.89358 -12.71430 -12.50132 -12.12716 -11.85690 -11.49852 -11.48223 -11.43918 -11.16732 -11.07611 -11.00814 -10.67043 -10.26260 -10.01213 -9.61447 -9.54561 -9.30363 -8.65814 -8.41743 -8.17363 -7.59255 -6.17501 -3.82069 0.81568 1.43604 1.82153 2.87459 3.51948 3.55480 3.73369 3.92673 4.60502 4.68133 4.79263 4.82916 5.01228 5.25817 5.29918 5.32905 5.45321 5.49735 5.56013 5.59566 5.66012 5.69374 5.81402 5.88724 5.91124 5.93860 5.96531 6.04170 6.29829 6.39062 6.56455 6.90366 7.35017 7.45445 7.84821 7.87438 8.06184 8.45039 8.69272 9.08299 9.86413 11.23079 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.004505 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.922242 B = 6213.749055 C = 6884.460139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.019 4.019 3 C -0.146 4.146 4 C 0.051 3.949 5 N -0.468 5.468 6 C 0.075 3.925 7 C 0.134 3.866 8 N -0.657 5.657 9 C 0.097 3.903 10 H 0.066 0.934 11 C -0.181 4.181 12 C 0.021 3.979 13 C -0.569 4.569 14 H 0.051 0.949 15 C 0.007 3.993 16 N -0.924 5.924 17 Si 1.067 2.933 18 H -0.290 1.290 19 H -0.285 1.285 20 H -0.291 1.291 21 C -0.232 4.232 22 S 0.103 5.897 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.335 0.665 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 20.355 -8.354 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.041 4.041 3 C -0.204 4.204 4 C -0.228 4.228 5 N -0.182 5.182 6 C -0.056 4.056 7 C 0.002 3.998 8 N -0.287 5.287 9 C -0.013 4.013 10 H 0.085 0.915 11 C -0.240 4.240 12 C -0.017 4.017 13 C -0.607 4.607 14 H 0.069 0.931 15 C -0.195 4.195 16 N -0.562 5.562 17 Si 0.897 3.103 18 H -0.217 1.217 19 H -0.211 1.211 20 H -0.217 1.217 21 C -0.371 4.371 22 S 0.357 5.643 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.152 0.848 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.196 20.377 -6.424 21.367 hybrid contribution 1.854 -0.259 -2.018 2.753 sum 2.050 20.118 -8.443 21.914 Atomic orbital electron populations 1.21925 0.93202 1.02939 1.02507 1.19784 0.96092 0.95228 0.92995 1.21915 1.01682 0.94267 1.02551 1.26966 1.00291 0.96867 0.98678 1.66079 1.13182 1.10032 1.28889 1.20240 1.00702 0.98532 0.86092 1.20443 0.92270 0.85935 1.01108 1.60583 1.25425 0.99893 1.42793 1.21650 0.95316 0.90780 0.93514 0.91535 1.22573 1.00860 1.00901 0.99683 1.19226 0.93971 0.91500 0.96980 1.21926 1.33315 1.06154 0.99349 0.93079 1.25761 0.94936 0.93811 1.04978 1.70780 1.45259 1.23613 1.16548 0.83568 0.76200 0.75467 0.75096 1.21671 1.21094 1.21744 1.26868 1.05539 0.99871 1.04859 1.83717 1.49617 1.28986 1.02003 0.92184 0.91323 0.91812 0.88316 0.92209 0.92117 0.91314 0.89789 0.94509 0.84756 0.94066 0.92475 0.93060 0.97377 0.97489 0.92422 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.09 37.16 0.34 -0.91 16 2 C -0.02 -0.18 3.35 -91.77 -0.31 -0.49 16 3 C -0.15 -1.10 9.09 37.16 0.34 -0.77 16 4 C 0.05 0.66 6.03 -13.46 -0.08 0.58 16 5 N -0.47 -7.37 10.53 -8.06 -0.08 -7.45 16 6 C 0.08 1.22 6.25 -84.23 -0.53 0.69 16 7 C 0.13 2.27 5.92 -4.98 -0.03 2.24 16 8 N -0.66 -13.11 5.95 -107.99 -0.64 -13.75 16 9 C 0.10 2.02 2.53 -67.71 -0.17 1.85 16 10 H 0.07 1.40 7.80 -51.93 -0.41 1.00 16 11 C -0.18 -3.18 9.16 37.16 0.34 -2.84 16 12 C 0.02 0.53 3.96 -27.88 -0.11 0.42 16 13 C -0.57 -16.49 8.84 -34.44 -0.30 -16.80 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.01 0.21 5.46 -17.82 -0.10 0.11 16 16 N -0.92 -29.20 13.65 55.43 0.76 -28.45 16 17 Si 1.07 26.33 29.90 -169.99 -5.08 21.25 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.23 -3.42 11.12 29.12 0.32 -3.09 16 22 S 0.10 1.24 22.53 -107.50 -2.42 -1.18 16 23 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 1.37 8.02 -51.92 -0.42 0.96 16 31 H 0.04 0.60 7.43 -51.93 -0.39 0.21 16 32 H 0.33 6.65 8.46 -39.29 -0.33 6.32 16 33 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.01 0.22 8.00 -51.93 -0.42 -0.19 16 37 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 38 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 39 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -32.50 335.74 -9.17 -41.67 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.46 Total: 1.85 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.29 Total: -19.00 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.03 Total: -49.65 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.08 Total: 21.25 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.42 Total: -1.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.50 -9.17 -41.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705581477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.293 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds