Wall clock time and date at job start Mon Mar 30 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 C 1.50698 * 109.47208 * 120.00338 * 2 1 3 5 5 N 1.29024 * 124.91473 * 119.99603 * 4 2 1 6 6 C 1.31779 * 117.12417 * 180.02562 * 5 4 2 7 7 C 1.50699 * 122.75042 * 179.97438 * 6 5 4 8 8 N 1.46893 * 109.47125 * 274.99730 * 7 6 5 9 9 C 1.46904 * 111.00244 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47164 * 35.00209 * 9 8 7 11 11 C 1.53004 * 109.47219 * 275.00615 * 9 8 7 12 12 C 1.53002 * 109.47145 * 155.00252 * 9 8 7 13 13 C 1.50696 * 109.46919 * 295.00022 * 12 9 8 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 12 9 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 12 9 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47035 * 60.00183 * 17 15 13 19 19 H 1.48503 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 299.99939 * 17 15 13 21 21 C 1.33641 * 114.50129 * 0.23016 * 6 5 4 22 22 S 1.70975 * 124.91615 * 299.99849 * 4 2 1 23 23 H 1.08996 * 109.47227 * 299.99738 * 1 2 3 24 24 H 1.09000 * 109.47310 * 59.99542 * 1 2 3 25 25 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46800 * 240.00736 * 2 1 3 27 27 H 1.08995 * 109.46874 * 60.00622 * 3 2 1 28 28 H 1.09004 * 109.46813 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47534 * 300.00023 * 3 2 1 30 30 H 1.09010 * 109.47070 * 154.99838 * 7 6 5 31 31 H 1.08997 * 109.47616 * 35.00420 * 7 6 5 32 32 H 1.00898 * 111.00298 * 56.04995 * 8 7 6 33 33 H 1.09001 * 109.47356 * 59.99403 * 11 9 8 34 34 H 1.09000 * 109.47210 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.46722 * 299.99865 * 11 9 8 36 36 H 1.09000 * 109.46497 * 175.00287 * 12 9 8 37 37 H 1.08999 * 109.46623 * 55.00351 * 12 9 8 38 38 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 39 39 H 1.07999 * 126.04011 * 179.76681 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7772 -1.7640 1.2224 6 6 3.1278 -2.2607 2.3916 7 6 3.9936 -3.4864 2.5301 8 7 3.1545 -4.6897 2.4547 9 6 3.9665 -5.9069 2.5856 10 1 4.7881 -5.7228 3.2779 11 6 4.5301 -6.2937 1.2167 12 6 3.0955 -7.0461 3.1191 13 6 2.6407 -6.7178 4.5178 14 1 2.9429 -5.7898 4.9802 15 6 1.8395 -7.6029 5.2077 16 7 1.4768 -8.7359 4.6470 17 14 1.2762 -7.1964 6.9417 18 1 0.4881 -5.9379 6.9239 19 1 0.4308 -8.3021 7.4595 20 1 2.4615 -7.0259 7.8200 21 6 2.6482 -1.5917 3.4444 22 16 1.6977 -0.2372 2.8389 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 4.5076 -3.4615 3.4911 31 1 4.7286 -3.5049 1.7255 32 1 2.6181 -4.7035 1.6002 33 1 5.1505 -5.4821 0.8366 34 1 5.1322 -7.1971 1.3138 35 1 3.7085 -6.4778 0.5245 36 1 3.6739 -7.9698 3.1325 37 1 2.2258 -7.1711 2.4741 38 1 1.7695 -8.9471 3.7466 39 1 2.8154 -1.8366 4.4828 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705581477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:21 Heat of formation + Delta-G solvation = -2.317181 kcal Electronic energy + Delta-G solvation = -18050.556780 eV Core-core repulsion = 15311.079580 eV Total energy + Delta-G solvation = -2739.477200 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00755 -38.38309 -36.58318 -35.09270 -32.69496 -30.34450 -28.80180 -28.09373 -26.92442 -25.41046 -24.79330 -21.84732 -21.65523 -20.75390 -18.89718 -18.41640 -16.91105 -16.59972 -16.00533 -15.64813 -15.46162 -15.41765 -15.19612 -14.78223 -14.35741 -13.99098 -13.92895 -13.49766 -13.33361 -13.05628 -13.02131 -12.93219 -12.56732 -12.48981 -12.48734 -12.17260 -12.07003 -11.93384 -11.87779 -11.44855 -10.64126 -10.60776 -10.46566 -10.35810 -9.72653 -9.14153 -8.56164 -6.21367 -0.24467 0.41933 0.75604 1.52852 1.62485 1.72420 1.80964 2.62654 2.97733 3.25083 3.47032 3.81739 4.00132 4.03657 4.13024 4.13808 4.26657 4.36070 4.43969 4.51428 4.56423 4.73515 4.73694 4.82733 4.90140 4.91197 5.03300 5.06238 5.10876 5.19067 5.21842 5.28671 5.30728 5.43583 6.11409 6.25064 6.34311 6.47893 6.73657 6.78857 7.56235 8.84880 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.004505 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.922242 B = 6213.749055 C = 6884.460139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.021 4.021 3 C -0.141 4.141 4 C 0.046 3.954 5 N -0.499 5.499 6 C 0.056 3.944 7 C 0.141 3.859 8 N -0.673 5.673 9 C 0.105 3.895 10 H 0.065 0.935 11 C -0.170 4.170 12 C 0.023 3.977 13 C -0.576 4.576 14 H 0.050 0.950 15 C -0.049 4.049 16 N -0.950 5.950 17 Si 1.115 2.885 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.269 1.269 21 C -0.254 4.254 22 S 0.158 5.842 23 H 0.064 0.936 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.333 0.667 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.049 0.951 36 H -0.010 1.010 37 H -0.018 1.018 38 H 0.252 0.748 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 22.864 -8.266 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.044 4.044 3 C -0.199 4.199 4 C -0.233 4.233 5 N -0.214 5.214 6 C -0.075 4.075 7 C 0.010 3.990 8 N -0.303 5.303 9 C -0.004 4.004 10 H 0.084 0.916 11 C -0.229 4.229 12 C -0.015 4.015 13 C -0.614 4.614 14 H 0.068 0.932 15 C -0.244 4.244 16 N -0.590 5.590 17 Si 0.938 3.062 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.194 1.194 21 C -0.394 4.394 22 S 0.413 5.587 23 H 0.083 0.917 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.009 0.991 37 H 0.000 1.000 38 H 0.061 0.939 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.055 22.914 -6.352 23.778 hybrid contribution 1.876 -0.963 -2.096 2.973 sum 1.931 21.951 -8.448 23.600 Atomic orbital electron populations 1.21931 0.92099 1.02271 1.04008 1.19983 0.96888 0.96153 0.91335 1.21908 1.01278 0.92772 1.03986 1.27647 0.99018 0.96128 1.00467 1.66089 1.14825 1.11472 1.28972 1.20165 1.01645 0.98775 0.86908 1.20368 0.92184 0.85082 1.01405 1.60442 1.26326 1.00608 1.42923 1.21370 0.94170 0.89681 0.95213 0.91636 1.22419 1.01024 1.01929 0.97484 1.19150 0.93650 0.92944 0.95708 1.22283 1.32765 1.05812 1.00588 0.93191 1.27297 0.95014 0.93279 1.08792 1.70918 1.46824 1.25040 1.16195 0.82954 0.76734 0.75696 0.70856 1.20035 1.21270 1.19391 1.27093 1.06116 1.01160 1.05039 1.83451 1.47872 1.26832 1.00496 0.91694 0.88860 0.93535 0.88745 0.91666 0.92761 0.89016 0.89634 0.93780 0.85000 0.91676 0.92027 0.93227 0.99136 0.99954 0.93909 0.79950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.09 71.98 0.65 -1.47 16 2 C -0.02 -0.38 3.35 -11.54 -0.04 -0.41 16 3 C -0.14 -1.76 9.09 71.98 0.65 -1.10 16 4 C 0.05 1.13 6.03 88.52 0.53 1.66 16 5 N -0.50 -15.39 10.53 -179.41 -1.89 -17.28 16 6 C 0.06 1.80 6.25 41.52 0.26 2.05 16 7 C 0.14 4.70 5.92 85.56 0.51 5.21 16 8 N -0.67 -26.92 5.95 -495.56 -2.95 -29.87 16 9 C 0.11 4.42 2.53 44.92 0.11 4.53 16 10 H 0.07 2.75 7.80 -2.39 -0.02 2.73 16 11 C -0.17 -5.83 9.16 71.98 0.66 -5.17 16 12 C 0.02 1.22 3.96 29.85 0.12 1.34 16 13 C -0.58 -33.80 8.84 25.60 0.23 -33.57 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 15 C -0.05 -2.92 5.46 84.66 0.46 -2.46 16 16 N -0.95 -61.29 13.65 21.45 0.29 -61.00 16 17 Si 1.12 52.66 29.90 68.60 2.05 54.71 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C -0.25 -7.27 11.12 66.78 0.74 -6.52 16 22 S 0.16 3.54 22.53 -56.49 -1.27 2.27 16 23 H 0.06 0.88 7.93 -2.39 -0.02 0.86 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.06 0.74 7.93 -2.39 -0.02 0.72 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 2.77 8.02 -2.38 -0.02 2.75 16 31 H 0.04 1.39 7.43 -2.39 -0.02 1.37 16 32 H 0.33 13.36 8.46 -89.70 -0.76 12.60 16 33 H 0.06 1.93 7.45 -2.39 -0.02 1.92 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 36 H -0.01 -0.54 8.00 -2.39 -0.02 -0.56 16 37 H -0.02 -1.04 8.01 -2.39 -0.02 -1.05 16 38 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 39 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -70.44 335.74 1.49 -68.96 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.36 Total: 18.13 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.89 Total: -35.92 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -4.55 Total: -108.15 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 2.05 Total: 54.71 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.27 Total: 2.27 kcal Total: -70.44 1.49 -68.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705581477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.639 kcal (2) G-P(sol) polarization free energy of solvation -70.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds