Wall clock time and date at job start Mon Mar 30 2020 07:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.46647 * 2 1 4 4 C 1.34235 * 116.99835 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99614 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99921 * 180.02562 * 4 3 2 7 7 C 1.53010 * 112.87889 * 185.35552 * 6 4 3 8 8 C 1.53002 * 109.46866 * 65.62560 * 7 6 4 9 9 C 1.53007 * 109.46608 * 174.95373 * 8 7 6 10 10 C 1.53002 * 109.46612 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46852 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00043 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00079 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00062 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47082 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46819 * 120.00173 * 15 13 11 18 18 H 1.48493 * 109.47136 * 240.00305 * 15 13 11 19 19 C 1.53838 * 113.66007 * 316.68398 * 6 4 3 20 20 C 1.51772 * 86.68578 * 89.81464 * 19 6 4 21 21 O 1.20764 * 135.75319 * 205.15840 * 20 19 6 22 22 C 1.51585 * 88.46838 * 25.07771 * 20 19 6 23 23 H 1.08996 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47252 * 299.99752 * 1 2 3 25 25 H 1.09005 * 109.47434 * 59.99892 * 1 2 3 26 26 H 1.09000 * 109.47252 * 240.00248 * 2 1 3 27 27 H 1.08997 * 109.46809 * 119.99533 * 2 1 3 28 28 H 1.08995 * 109.47059 * 305.61765 * 7 6 4 29 29 H 1.09000 * 109.46414 * 185.62317 * 7 6 4 30 30 H 1.08998 * 109.47450 * 54.95362 * 8 7 6 31 31 H 1.09003 * 109.46918 * 294.94566 * 8 7 6 32 32 H 1.08998 * 109.47224 * 59.99851 * 9 8 7 33 33 H 1.08995 * 109.46974 * 299.99541 * 9 8 7 34 34 H 1.08995 * 109.47400 * 299.99677 * 10 9 8 35 35 H 1.08998 * 109.47124 * 60.00187 * 10 9 8 36 36 H 0.97003 * 120.00222 * 179.97438 * 14 13 11 37 37 H 1.08999 * 113.66887 * 204.24599 * 19 6 4 38 38 H 1.08999 * 113.66856 * 335.32101 * 19 6 4 39 39 H 1.09004 * 113.66434 * 220.45869 * 22 20 19 40 40 H 1.08997 * 113.66506 * 89.39360 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 5.4450 2.9509 -0.1299 8 6 5.8435 2.4077 -1.5036 9 6 7.3574 2.5377 -1.6837 10 6 7.7560 1.9939 -3.0571 11 6 9.2470 2.1226 -3.2349 12 1 9.8499 2.5491 -2.4468 13 6 9.8414 1.6948 -4.4030 14 7 9.1073 1.1750 -5.3623 15 14 11.6897 1.8536 -4.6230 16 1 12.2822 2.4654 -3.4065 17 1 12.2800 0.5079 -4.8375 18 1 11.9761 2.7131 -5.7996 19 6 3.2095 3.9001 -0.9655 20 6 2.2860 4.2385 0.1905 21 8 1.1584 4.6558 0.3034 22 6 3.3912 3.8240 1.1415 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8821 2.3260 0.6489 29 1 5.8097 3.9725 -0.0233 30 1 5.3348 2.9774 -2.2812 31 1 5.5579 1.3583 -1.5761 32 1 7.8661 1.9680 -0.9061 33 1 7.6431 3.5871 -1.6111 34 1 7.4704 0.9446 -3.1293 35 1 7.2473 2.5634 -3.8350 36 1 9.5255 0.8743 -6.1843 37 1 3.8313 4.7353 -1.2876 38 1 2.7093 3.3982 -1.7938 39 1 3.0371 3.2610 2.0051 40 1 4.0641 4.6378 1.4116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706588065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:26 Heat of formation + Delta-G solvation = -143.779223 kcal Electronic energy + Delta-G solvation = -20509.030239 eV Core-core repulsion = 17288.373162 eV Total energy + Delta-G solvation = -3220.657077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39005 -40.48152 -38.42625 -37.52296 -36.33862 -34.40144 -32.62967 -31.18867 -27.79405 -27.27459 -26.04957 -24.24980 -23.22382 -21.73098 -21.24294 -20.25376 -18.50184 -18.42402 -17.71498 -17.42301 -16.68865 -16.50657 -16.27284 -16.14827 -15.85757 -15.19692 -14.69891 -14.55458 -14.16834 -13.82699 -13.67244 -13.49778 -13.35580 -13.25186 -13.00793 -12.89839 -12.74389 -12.56088 -12.42909 -12.10377 -12.04081 -11.72554 -11.61614 -11.48254 -11.25201 -11.17579 -10.86868 -10.54823 -10.46909 -8.18635 -6.30033 0.88176 0.97648 1.40315 1.41020 1.52494 1.54473 2.41976 2.73612 3.14285 3.17646 3.43151 3.67679 3.82037 3.93293 3.96591 4.01454 4.27653 4.31682 4.38289 4.56658 4.57625 4.69145 4.76324 4.80340 4.84666 4.89013 4.90730 5.00932 5.04728 5.08980 5.31497 5.34686 5.39046 5.47144 5.60973 5.82792 5.90077 6.27782 6.44217 6.62032 6.88508 7.39517 8.93536 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.025864 B = 0.003659 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.321432 B = 7650.217266 C = 8237.305932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.474 3.526 5 O -0.521 6.521 6 C -0.076 4.076 7 C -0.078 4.078 8 C -0.116 4.116 9 C -0.096 4.096 10 C 0.020 3.980 11 C -0.541 4.541 12 H 0.063 0.937 13 C -0.005 4.005 14 N -0.937 5.937 15 Si 0.966 3.034 16 H -0.259 1.259 17 H -0.281 1.281 18 H -0.277 1.277 19 C -0.170 4.170 20 C 0.369 3.631 21 O -0.457 6.457 22 C -0.152 4.152 23 H 0.102 0.898 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.065 0.935 34 H -0.022 1.022 35 H -0.008 1.008 36 H 0.262 0.738 37 H 0.163 0.837 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.701 4.771 14.437 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.281 6.281 4 C 0.318 3.682 5 O -0.409 6.409 6 C -0.078 4.078 7 C -0.115 4.115 8 C -0.154 4.154 9 C -0.134 4.134 10 C -0.017 4.017 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.791 3.209 16 H -0.183 1.183 17 H -0.207 1.207 18 H -0.202 1.202 19 C -0.207 4.207 20 C 0.245 3.755 21 O -0.331 6.331 22 C -0.189 4.189 23 H 0.120 0.880 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.083 0.917 34 H -0.003 1.003 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.180 0.820 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.121 4.591 14.343 22.061 hybrid contribution 0.946 -0.956 -0.793 1.562 sum -15.175 3.635 13.549 20.666 Atomic orbital electron populations 1.21818 0.90402 1.04428 1.03561 1.23298 0.97073 0.79043 1.02621 1.86493 1.23973 1.33958 1.83725 1.23524 0.80590 0.92345 0.71763 1.90699 1.60995 1.43810 1.45388 1.21369 0.97394 0.87289 1.01701 1.21391 0.88793 1.04130 0.97142 1.21596 0.96030 1.00304 0.97467 1.21418 0.94762 1.00500 0.96678 1.19054 0.95046 0.93981 0.93613 1.21798 0.94423 1.40203 1.01481 0.91925 1.26043 1.03607 0.94817 0.95751 1.70120 1.37593 1.42965 1.07046 0.85378 0.79138 0.77870 0.78532 1.18278 1.20653 1.20226 1.24299 0.97802 1.00048 0.98578 1.25833 0.86358 0.68471 0.94819 1.90409 1.19602 1.35967 1.87073 1.24179 0.97242 1.00126 0.97370 0.87952 0.91207 0.91698 0.91798 0.90843 0.91129 0.86482 0.91911 0.94496 0.93744 0.91675 1.00335 0.98949 0.92882 0.81975 0.88981 0.87760 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.29 71.98 0.74 -1.34 16 2 C 0.05 1.08 6.19 71.98 0.45 1.52 16 3 O -0.36 -8.81 9.10 -51.46 -0.47 -9.28 16 4 C 0.47 12.53 6.83 71.23 0.49 13.01 16 5 O -0.52 -17.51 14.52 21.97 0.32 -17.19 16 6 C -0.08 -1.51 0.94 -52.42 -0.05 -1.56 16 7 C -0.08 -1.73 4.26 30.60 0.13 -1.60 16 8 C -0.12 -3.82 4.89 30.60 0.15 -3.67 16 9 C -0.10 -3.88 5.15 30.60 0.16 -3.72 16 10 C 0.02 1.09 4.97 29.85 0.15 1.24 16 11 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 12 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 13 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 14 N -0.94 -58.44 13.29 21.44 0.28 -58.15 16 15 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 16 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.17 -2.93 6.33 30.47 0.19 -2.73 16 20 C 0.37 6.97 8.13 29.67 0.24 7.22 16 21 O -0.46 -11.89 17.99 -1.46 -0.03 -11.92 16 22 C -0.15 -2.02 7.18 30.41 0.22 -1.80 16 23 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 28 H 0.07 1.69 8.03 -2.39 -0.02 1.67 16 29 H 0.12 1.81 8.07 -2.39 -0.02 1.79 16 30 H 0.06 1.95 7.48 -2.39 -0.02 1.93 16 31 H 0.04 1.42 6.61 -2.39 -0.02 1.41 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.16 1.93 8.10 -2.39 -0.02 1.91 16 38 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 39 H 0.10 1.32 8.09 -2.38 -0.02 1.30 16 40 H 0.17 1.04 8.04 -2.39 -0.02 1.02 16 Total: -1.00 -76.43 337.33 6.70 -69.73 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.00 Total: 4.40 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.56 Total: -24.42 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.15 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.18 Total: -38.39 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.43 6.70 -69.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706588065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.047 kcal (2) G-P(sol) polarization free energy of solvation -76.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds