Wall clock time and date at job start Mon Mar 30 2020 07:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46728 * 2 1 4 4 C 1.34230 * 116.99702 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00004 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99902 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.78095 * 179.53222 * 6 4 3 8 8 H 1.09004 * 109.47277 * 180.47803 * 7 6 4 9 9 C 1.53003 * 109.46645 * 300.47417 * 7 6 4 10 10 C 1.50702 * 109.47578 * 60.47106 * 7 6 4 11 11 H 1.07999 * 119.99536 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99947 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99640 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00048 * 0.02562 * 12 10 7 15 15 H 1.48500 * 109.46905 * 89.99935 * 14 12 10 16 16 H 1.48501 * 109.47041 * 209.99525 * 14 12 10 17 17 H 1.48493 * 109.47446 * 329.99894 * 14 12 10 18 18 C 1.53661 * 109.78629 * 58.86847 * 6 4 3 19 19 C 1.52962 * 109.32236 * 295.18829 * 18 6 4 20 20 C 1.52950 * 109.82114 * 296.26919 * 19 18 6 21 21 C 1.53236 * 109.40351 * 63.60188 * 20 19 18 22 22 C 1.51272 * 108.53294 * 305.37103 * 21 20 19 23 23 O 1.20763 * 120.84846 * 231.32025 * 22 21 20 24 24 H 1.09007 * 109.46935 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47585 * 300.00311 * 1 2 3 26 26 H 1.08997 * 109.47152 * 60.00071 * 1 2 3 27 27 H 1.08993 * 109.47418 * 240.00335 * 2 1 3 28 28 H 1.09002 * 109.46795 * 119.99298 * 2 1 3 29 29 H 1.09005 * 109.47032 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.47477 * 299.99804 * 9 7 6 31 31 H 1.09004 * 109.46968 * 60.00196 * 9 7 6 32 32 H 0.96999 * 119.99809 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.62657 * 175.17069 * 18 6 4 34 34 H 1.08997 * 109.42188 * 55.08586 * 18 6 4 35 35 H 1.09001 * 109.40889 * 176.15997 * 19 18 6 36 36 H 1.09005 * 109.41092 * 56.38092 * 19 18 6 37 37 H 1.08995 * 109.48666 * 303.62366 * 20 19 18 38 38 H 1.09001 * 109.48820 * 183.57937 * 20 19 18 39 39 H 1.09002 * 109.62629 * 185.66258 * 21 20 19 40 40 H 1.08992 * 109.78512 * 65.17980 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4488 2.8658 0.0125 8 1 5.8600 3.8753 0.0206 9 6 5.9139 2.1157 1.2624 10 6 5.9278 2.1382 -1.2172 11 1 5.2136 1.7647 -1.9361 12 6 7.2778 1.9503 -1.4251 13 7 7.6957 1.3157 -2.4986 14 14 8.5131 2.5970 -0.1820 15 1 8.7781 1.5538 0.8411 16 1 9.7795 2.9424 -0.8764 17 1 7.9637 3.8088 0.4774 18 6 3.4280 3.7046 1.2370 19 6 1.9125 3.8912 1.1465 20 6 1.5685 4.7613 -0.0635 21 6 1.9921 4.0390 -1.3469 22 6 3.4570 3.6787 -1.2346 23 8 4.2354 3.9706 -2.1105 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 7.0027 2.0642 1.2711 30 1 5.5675 2.6419 2.1519 31 1 5.5028 1.1062 1.2542 32 1 8.6455 1.1832 -2.6446 33 1 3.9125 4.6801 1.2797 34 1 3.6716 3.1379 2.1356 35 1 1.5522 4.3746 2.0546 36 1 1.4333 2.9179 1.0409 37 1 2.0969 5.7117 0.0101 38 1 0.4940 4.9434 -0.0867 39 1 1.8413 4.6960 -2.2035 40 1 1.4005 3.1323 -1.4723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709465323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:57 Heat of formation + Delta-G solvation = -144.629473 kcal Electronic energy + Delta-G solvation = -22750.579825 eV Core-core repulsion = 19529.885878 eV Total energy + Delta-G solvation = -3220.693946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37251 -40.32099 -37.99773 -37.37767 -35.83319 -33.76947 -32.53943 -30.91497 -29.72734 -27.22746 -25.15523 -24.42173 -22.87627 -22.57681 -21.26388 -20.31468 -18.82034 -18.38256 -17.69300 -17.02776 -16.94719 -16.56853 -15.51164 -15.30954 -15.26744 -14.95793 -14.72406 -14.54007 -14.34345 -14.18649 -13.76993 -13.62162 -13.43837 -13.02925 -12.81842 -12.79458 -12.52358 -12.43285 -12.25874 -12.07781 -11.86142 -11.60579 -11.59803 -11.45556 -11.17382 -10.93985 -10.78920 -10.69736 -10.09235 -8.20088 -6.15636 0.85169 1.25516 1.31462 1.40285 1.41425 1.84262 2.35219 3.08595 3.18004 3.57712 3.77759 3.88555 4.06895 4.07860 4.17522 4.22457 4.35056 4.43302 4.50434 4.52245 4.68092 4.73250 4.84842 4.88551 4.94238 5.02337 5.03592 5.12072 5.16616 5.18364 5.21635 5.30973 5.37475 5.47791 5.64994 5.69464 5.76329 6.30325 6.65099 6.78748 6.94980 7.39742 8.99201 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.008321 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.413800 B = 3364.057179 C = 3772.945677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 O -0.342 6.342 4 C 0.478 3.522 5 O -0.502 6.502 6 C -0.087 4.087 7 C 0.027 3.973 8 H 0.035 0.965 9 C -0.158 4.158 10 C -0.453 4.453 11 H 0.016 0.984 12 C -0.009 4.009 13 N -0.964 5.964 14 Si 0.951 3.049 15 H -0.271 1.271 16 H -0.303 1.303 17 H -0.243 1.243 18 C -0.105 4.105 19 C -0.131 4.131 20 C -0.101 4.101 21 C -0.160 4.160 22 C 0.356 3.644 23 O -0.461 6.461 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.258 0.742 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.420 5.183 11.880 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 O -0.260 6.260 4 C 0.320 3.680 5 O -0.388 6.388 6 C -0.089 4.089 7 C 0.008 3.992 8 H 0.053 0.947 9 C -0.214 4.214 10 C -0.491 4.491 11 H 0.035 0.965 12 C -0.203 4.203 13 N -0.607 5.607 14 Si 0.779 3.221 15 H -0.197 1.197 16 H -0.231 1.231 17 H -0.167 1.167 18 C -0.143 4.143 19 C -0.168 4.168 20 C -0.138 4.138 21 C -0.198 4.198 22 C 0.230 3.770 23 O -0.332 6.332 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.675 4.966 11.327 22.399 hybrid contribution 1.626 -0.636 -0.427 1.797 sum -17.049 4.330 10.900 20.694 Atomic orbital electron populations 1.21790 0.89197 1.04267 1.04240 1.23291 0.97736 0.80081 1.01702 1.86552 1.22793 1.32579 1.84056 1.23073 0.80886 0.91484 0.72555 1.90678 1.60778 1.43430 1.43885 1.21520 0.97258 0.90249 0.99884 1.19003 0.89602 0.96264 0.94351 0.94679 1.22360 0.99307 1.02154 0.97619 1.20869 0.91635 1.32367 1.04269 0.96537 1.25859 1.00674 0.96108 0.97625 1.70081 1.14882 1.45863 1.29914 0.85817 0.77616 0.80021 0.78635 1.19743 1.23098 1.16675 1.21889 0.98653 1.00223 0.93512 1.21875 0.92891 1.02481 0.99519 1.21506 1.03420 0.97926 0.90968 1.22392 0.91291 1.03808 1.02293 1.25204 0.92330 0.75104 0.84363 1.90492 1.59533 1.43903 1.39301 0.88706 0.89932 0.91185 0.93554 0.91420 0.95454 0.90818 0.91987 0.93304 0.89395 0.89568 0.87935 0.89267 0.91298 0.87480 0.89061 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 10.29 71.98 0.74 -1.30 16 2 C 0.05 1.14 6.19 71.98 0.45 1.59 16 3 O -0.34 -10.05 5.65 -51.42 -0.29 -10.34 16 4 C 0.48 18.93 5.83 71.24 0.42 19.34 16 5 O -0.50 -24.58 12.19 21.97 0.27 -24.31 16 6 C -0.09 -3.37 0.28 -53.27 -0.01 -3.39 16 7 C 0.03 1.30 0.98 -11.54 -0.01 1.28 16 8 H 0.04 1.75 7.20 -2.38 -0.02 1.73 16 9 C -0.16 -6.99 8.06 71.98 0.58 -6.41 16 10 C -0.45 -28.14 5.99 25.60 0.15 -27.99 16 11 H 0.02 1.16 6.95 -2.91 -0.02 1.14 16 12 C -0.01 -0.60 5.45 84.65 0.46 -0.14 16 13 N -0.96 -66.87 13.96 21.45 0.30 -66.57 16 14 Si 0.95 49.57 24.37 68.60 1.67 51.24 16 15 H -0.27 -13.49 6.87 99.48 0.68 -12.81 16 16 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 17 H -0.24 -11.45 6.53 99.48 0.65 -10.80 16 18 C -0.11 -2.76 4.24 30.80 0.13 -2.63 16 19 C -0.13 -2.36 5.59 30.56 0.17 -2.19 16 20 C -0.10 -1.77 5.94 30.66 0.18 -1.58 16 21 C -0.16 -4.17 5.73 30.11 0.17 -4.00 16 22 C 0.36 14.08 5.57 29.47 0.16 14.25 16 23 O -0.46 -23.57 15.26 -1.46 -0.02 -23.59 16 24 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 28 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.03 1.27 3.27 -2.38 -0.01 1.26 16 30 H 0.07 2.53 6.61 -2.39 -0.02 2.51 16 31 H 0.06 2.93 5.52 -2.38 -0.01 2.92 16 32 H 0.26 16.83 8.31 -92.71 -0.77 16.06 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.08 6.79 -2.39 -0.02 2.06 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.68 5.24 -2.38 -0.01 1.67 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.11 2.67 6.94 -2.39 -0.02 2.65 16 Total: -1.00 -85.98 300.31 6.47 -79.51 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.96 Total: 7.23 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 3.59 Total: -13.17 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.30 Total: -66.57 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -0.04 Total: -58.24 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.67 Total: 51.24 kcal Total: -85.98 6.47 -79.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709465323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.124 kcal (2) G-P(sol) polarization free energy of solvation -85.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds