Wall clock time and date at job start Mon Mar 30 2020 07:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47317 * 2 1 4 4 C 1.34226 * 117.00352 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99779 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00469 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.62454 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46969 * 60.00180 * 7 6 4 9 9 C 1.53010 * 109.46811 * 179.97438 * 7 6 4 10 10 C 1.50695 * 109.47392 * 299.99581 * 7 6 4 11 11 H 1.07997 * 119.99986 * 354.42366 * 10 7 6 12 12 C 1.37881 * 120.00028 * 174.41661 * 10 7 6 13 13 N 1.31514 * 119.99947 * 157.23720 * 12 10 7 14 14 Si 1.86796 * 120.00029 * 337.24150 * 12 10 7 15 15 H 1.48503 * 109.47261 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.47508 * 59.99543 * 14 12 10 17 17 H 1.48507 * 109.46948 * 299.99335 * 14 12 10 18 18 C 1.53228 * 109.62306 * 300.38189 * 6 4 3 19 19 C 1.53005 * 109.38298 * 65.46960 * 18 6 4 20 20 C 1.52949 * 109.98422 * 63.31274 * 19 18 6 21 21 C 1.53235 * 109.40700 * 296.48472 * 20 19 18 22 22 C 1.51266 * 108.53440 * 54.62325 * 21 20 19 23 23 O 1.20765 * 120.84459 * 128.63192 * 22 21 20 24 24 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47081 * 299.99696 * 1 2 3 26 26 H 1.09003 * 109.47142 * 59.99847 * 1 2 3 27 27 H 1.08996 * 109.46671 * 239.99976 * 2 1 3 28 28 H 1.09003 * 109.47142 * 120.00152 * 2 1 3 29 29 H 1.08996 * 109.47045 * 172.78735 * 9 7 6 30 30 H 1.09002 * 109.46711 * 292.78491 * 9 7 6 31 31 H 1.08999 * 109.46894 * 52.78028 * 9 7 6 32 32 H 0.97001 * 119.99921 * 354.93188 * 13 12 10 33 33 H 1.09001 * 109.47955 * 185.25860 * 18 6 4 34 34 H 1.09006 * 109.48214 * 305.29190 * 18 6 4 35 35 H 1.09004 * 109.26413 * 303.19617 * 19 18 6 36 36 H 1.09003 * 109.33606 * 183.47974 * 19 18 6 37 37 H 1.08997 * 109.48325 * 176.50348 * 20 19 18 38 38 H 1.08999 * 109.48402 * 56.46255 * 20 19 18 39 39 H 1.09001 * 109.62420 * 294.91393 * 21 20 19 40 40 H 1.09004 * 109.78342 * 174.43668 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4489 2.8613 -0.0001 8 1 5.7861 2.3304 -0.8904 9 6 6.0299 4.2767 -0.0002 10 6 5.9154 2.1264 1.2300 11 1 5.2023 1.8302 1.9850 12 6 7.2527 1.8319 1.3915 13 7 7.7374 1.6140 2.5945 14 14 8.3760 1.7427 -0.0983 15 1 9.7557 1.4131 0.3410 16 1 8.3789 3.0540 -0.7954 17 1 7.8864 0.6906 -1.0250 18 6 3.4424 3.6926 -1.2444 19 6 1.9276 3.8930 -1.1657 20 6 1.5782 4.7704 0.0374 21 6 1.9861 4.0513 1.3276 22 6 3.4496 3.6815 1.2298 23 8 4.2222 3.9734 2.1109 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 7.1111 4.2257 0.1287 30 1 5.7996 4.7639 -0.9477 31 1 5.5929 4.8489 0.8182 32 1 7.1722 1.7322 3.3738 33 1 3.9332 4.6648 -1.2906 34 1 3.6903 3.1173 -2.1365 35 1 1.4415 2.9230 -1.0601 36 1 1.5793 4.3751 -2.0792 37 1 0.5047 4.9590 0.0502 38 1 2.1130 5.7173 -0.0357 39 1 1.3877 3.1483 1.4484 40 1 1.8312 4.7102 2.1820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709465325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:01 Heat of formation + Delta-G solvation = -129.787986 kcal Electronic energy + Delta-G solvation = -22742.301031 eV Core-core repulsion = 19522.250660 eV Total energy + Delta-G solvation = -3220.050371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86030 -38.91156 -36.29974 -36.00994 -34.15437 -31.85499 -31.47275 -29.43149 -28.25687 -25.02842 -23.72037 -22.88224 -21.55939 -21.17777 -20.00974 -18.26560 -17.35635 -16.98373 -16.26838 -15.81469 -15.40379 -14.40578 -14.31647 -14.02868 -13.80471 -13.35642 -13.27165 -12.85535 -12.83255 -12.69084 -12.40652 -12.32139 -11.78759 -11.55989 -11.46957 -11.31051 -11.21204 -10.83429 -10.66382 -10.45895 -10.29254 -10.14878 -10.09355 -9.92467 -9.65052 -9.56053 -8.74352 -8.56770 -7.90576 -6.20491 -3.71137 2.36196 2.91182 3.21398 3.51543 3.59358 3.74954 4.50808 4.71159 4.92914 4.94831 5.00757 5.02801 5.08565 5.17749 5.28480 5.36961 5.47216 5.59482 5.66817 5.69404 5.81419 5.85247 5.90717 5.97613 6.06157 6.09283 6.12655 6.22743 6.42101 6.49196 6.57868 6.75709 6.79485 6.92645 7.23346 7.52586 8.16671 8.24323 8.43227 8.65247 9.12965 9.87274 11.18143 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.008593 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.757666 B = 3257.743886 C = 3801.860063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.471 3.529 5 O -0.456 6.456 6 C -0.075 4.075 7 C 0.041 3.959 8 H 0.030 0.970 9 C -0.152 4.152 10 C -0.558 4.558 11 H 0.052 0.948 12 C 0.033 3.967 13 N -0.909 5.909 14 Si 1.033 2.967 15 H -0.288 1.288 16 H -0.280 1.280 17 H -0.285 1.285 18 C -0.110 4.110 19 C -0.137 4.137 20 C -0.105 4.105 21 C -0.170 4.170 22 C 0.364 3.636 23 O -0.396 6.396 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.266 0.734 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.527 3.505 -8.589 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.337 6.337 6 C -0.077 4.077 7 C 0.022 3.978 8 H 0.048 0.952 9 C -0.209 4.209 10 C -0.595 4.595 11 H 0.070 0.930 12 C -0.171 4.171 13 N -0.544 5.544 14 Si 0.862 3.138 15 H -0.215 1.215 16 H -0.207 1.207 17 H -0.211 1.211 18 C -0.148 4.148 19 C -0.174 4.174 20 C -0.143 4.143 21 C -0.208 4.208 22 C 0.234 3.766 23 O -0.263 6.263 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.308 2.972 -8.553 16.932 hybrid contribution -1.565 0.029 0.454 1.630 sum -15.873 3.001 -8.099 18.071 Atomic orbital electron populations 1.21780 0.93126 1.02521 1.03156 1.22923 0.94815 0.81655 1.02475 1.86556 1.25561 1.30953 1.85100 1.23128 0.79809 0.92188 0.73846 1.90729 1.59671 1.41914 1.41402 1.21435 1.00632 0.88894 0.96740 1.18909 0.85035 0.94372 0.99467 0.95207 1.22370 1.01920 0.98273 0.98331 1.21553 0.94922 1.39205 1.03866 0.92971 1.25501 0.96345 0.94024 1.01232 1.70809 1.38190 1.47064 0.98326 0.84213 0.76337 0.76908 0.76309 1.21453 1.20652 1.21142 1.21733 0.95979 1.01125 0.95920 1.21860 0.95951 1.01862 0.97697 1.21410 1.01078 0.98427 0.93376 1.22365 0.96103 1.02710 0.99594 1.24225 0.89765 0.76937 0.85707 1.90471 1.57365 1.41367 1.37113 0.90742 0.91695 0.91681 0.91580 0.91561 0.92550 0.95983 0.92611 0.92416 0.89915 0.90903 0.89240 0.91677 0.91266 0.91891 0.88274 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.76 5.70 -39.25 -0.22 -5.99 16 4 C 0.47 9.60 6.14 36.00 0.22 9.82 16 5 O -0.46 -11.17 14.54 -18.75 -0.27 -11.44 16 6 C -0.07 -1.50 0.29 -156.42 -0.05 -1.55 16 7 C 0.04 1.00 0.91 -91.77 -0.08 0.92 16 8 H 0.03 0.75 6.69 -51.93 -0.35 0.40 16 9 C -0.15 -3.44 8.13 37.16 0.30 -3.14 16 10 C -0.56 -16.37 5.63 -34.44 -0.19 -16.57 16 11 H 0.05 1.70 6.92 -52.49 -0.36 1.33 16 12 C 0.03 1.00 5.20 -17.82 -0.09 0.91 16 13 N -0.91 -29.67 13.70 55.43 0.76 -28.91 16 14 Si 1.03 26.87 26.43 -169.99 -4.49 22.38 16 15 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 16 H -0.28 -6.67 6.13 56.52 0.35 -6.32 16 17 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 18 C -0.11 -1.68 4.50 -26.61 -0.12 -1.80 16 19 C -0.14 -1.63 5.59 -26.75 -0.15 -1.78 16 20 C -0.11 -1.21 5.94 -26.64 -0.16 -1.37 16 21 C -0.17 -2.45 5.74 -27.48 -0.16 -2.61 16 22 C 0.36 7.21 5.03 -28.48 -0.14 7.07 16 23 O -0.40 -9.57 13.34 6.00 0.08 -9.50 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 29 H 0.06 1.37 5.44 -51.93 -0.28 1.08 16 30 H 0.02 0.41 6.72 -51.93 -0.35 0.06 16 31 H 0.05 1.29 5.72 -51.93 -0.30 0.99 16 32 H 0.27 8.78 8.73 -40.82 -0.36 8.42 16 33 H 0.08 1.21 6.32 -51.93 -0.33 0.88 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.10 5.28 -51.93 -0.27 0.83 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.36 6.94 -51.93 -0.36 1.00 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 303.75 15.07 4.58 4.58 Total: -1.00 -35.20 303.75 -5.62 -40.82 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.03 Total: -1.84 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.01 Total: -10.11 kcal Atomic # 7 Polarization: -29.67 SS G_CDS: 0.76 Total: -28.91 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.42 Total: -26.92 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -4.49 Total: 22.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.20 -5.62 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709465325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.968 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds