Wall clock time and date at job start Mon Mar 30 2020 07:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47317 * 2 1 4 4 C 1.34226 * 117.00352 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99779 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00469 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.62454 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46969 * 60.00180 * 7 6 4 9 9 C 1.53010 * 109.46811 * 179.97438 * 7 6 4 10 10 C 1.50695 * 109.47392 * 299.99581 * 7 6 4 11 11 H 1.07997 * 119.99986 * 354.42366 * 10 7 6 12 12 C 1.37881 * 120.00028 * 174.41661 * 10 7 6 13 13 N 1.31514 * 119.99947 * 157.23720 * 12 10 7 14 14 Si 1.86796 * 120.00029 * 337.24150 * 12 10 7 15 15 H 1.48503 * 109.47261 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.47508 * 59.99543 * 14 12 10 17 17 H 1.48507 * 109.46948 * 299.99335 * 14 12 10 18 18 C 1.53228 * 109.62306 * 300.38189 * 6 4 3 19 19 C 1.53005 * 109.38298 * 65.46960 * 18 6 4 20 20 C 1.52949 * 109.98422 * 63.31274 * 19 18 6 21 21 C 1.53235 * 109.40700 * 296.48472 * 20 19 18 22 22 C 1.51266 * 108.53440 * 54.62325 * 21 20 19 23 23 O 1.20765 * 120.84459 * 128.63192 * 22 21 20 24 24 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47081 * 299.99696 * 1 2 3 26 26 H 1.09003 * 109.47142 * 59.99847 * 1 2 3 27 27 H 1.08996 * 109.46671 * 239.99976 * 2 1 3 28 28 H 1.09003 * 109.47142 * 120.00152 * 2 1 3 29 29 H 1.08996 * 109.47045 * 172.78735 * 9 7 6 30 30 H 1.09002 * 109.46711 * 292.78491 * 9 7 6 31 31 H 1.08999 * 109.46894 * 52.78028 * 9 7 6 32 32 H 0.97001 * 119.99921 * 354.93188 * 13 12 10 33 33 H 1.09001 * 109.47955 * 185.25860 * 18 6 4 34 34 H 1.09006 * 109.48214 * 305.29190 * 18 6 4 35 35 H 1.09004 * 109.26413 * 303.19617 * 19 18 6 36 36 H 1.09003 * 109.33606 * 183.47974 * 19 18 6 37 37 H 1.08997 * 109.48325 * 176.50348 * 20 19 18 38 38 H 1.08999 * 109.48402 * 56.46255 * 20 19 18 39 39 H 1.09001 * 109.62420 * 294.91393 * 21 20 19 40 40 H 1.09004 * 109.78342 * 174.43668 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4489 2.8613 -0.0001 8 1 5.7861 2.3304 -0.8904 9 6 6.0299 4.2767 -0.0002 10 6 5.9154 2.1264 1.2300 11 1 5.2023 1.8302 1.9850 12 6 7.2527 1.8319 1.3915 13 7 7.7374 1.6140 2.5945 14 14 8.3760 1.7427 -0.0983 15 1 9.7557 1.4131 0.3410 16 1 8.3789 3.0540 -0.7954 17 1 7.8864 0.6906 -1.0250 18 6 3.4424 3.6926 -1.2444 19 6 1.9276 3.8930 -1.1657 20 6 1.5782 4.7704 0.0374 21 6 1.9861 4.0513 1.3276 22 6 3.4496 3.6815 1.2298 23 8 4.2222 3.9734 2.1109 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 7.1111 4.2257 0.1287 30 1 5.7996 4.7639 -0.9477 31 1 5.5929 4.8489 0.8182 32 1 7.1722 1.7322 3.3738 33 1 3.9332 4.6648 -1.2906 34 1 3.6903 3.1173 -2.1365 35 1 1.4415 2.9230 -1.0601 36 1 1.5793 4.3751 -2.0792 37 1 0.5047 4.9590 0.0502 38 1 2.1130 5.7173 -0.0357 39 1 1.3877 3.1483 1.4484 40 1 1.8312 4.7102 2.1820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709465325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:01 Heat of formation + Delta-G solvation = -153.564388 kcal Electronic energy + Delta-G solvation = -22743.332053 eV Core-core repulsion = 19522.250660 eV Total energy + Delta-G solvation = -3221.081393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.39688 -40.45920 -37.84474 -37.41373 -35.93669 -33.79860 -32.57705 -30.83706 -29.71366 -26.97326 -25.06030 -24.20437 -22.90569 -22.64664 -21.49200 -19.88053 -19.50905 -18.47711 -17.72409 -17.29226 -16.82125 -15.96256 -15.67960 -15.61666 -15.19973 -14.96518 -14.71246 -14.55103 -14.15884 -13.87447 -13.84574 -13.63401 -13.36230 -12.96830 -12.77140 -12.70208 -12.61119 -12.51319 -12.21145 -11.94789 -11.87546 -11.68732 -11.49730 -11.44561 -11.30643 -11.21131 -10.85844 -10.39182 -10.01964 -8.62835 -6.11493 0.81309 1.34753 1.39785 1.51040 1.68203 1.80031 2.53763 3.05017 3.16639 3.59150 3.76829 3.85867 4.01646 4.02851 4.13029 4.18856 4.36324 4.37695 4.46898 4.52131 4.68899 4.78052 4.82439 4.86483 4.96008 4.97558 5.02876 5.12224 5.15588 5.16618 5.22497 5.28393 5.36974 5.47164 5.61404 5.69331 6.04699 6.17161 6.63199 6.66793 6.87257 7.54056 8.73391 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.008593 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.757666 B = 3257.743886 C = 3801.860063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 O -0.342 6.342 4 C 0.475 3.525 5 O -0.511 6.511 6 C -0.088 4.088 7 C 0.033 3.967 8 H 0.027 0.973 9 C -0.145 4.145 10 C -0.538 4.538 11 H 0.002 0.998 12 C -0.033 4.033 13 N -0.948 5.948 14 Si 1.075 2.925 15 H -0.292 1.292 16 H -0.240 1.240 17 H -0.276 1.276 18 C -0.108 4.108 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.162 4.162 22 C 0.361 3.639 23 O -0.457 6.457 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.244 0.756 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.511 5.172 -11.860 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 O -0.260 6.260 4 C 0.317 3.683 5 O -0.398 6.398 6 C -0.090 4.090 7 C 0.014 3.986 8 H 0.045 0.955 9 C -0.202 4.202 10 C -0.576 4.576 11 H 0.021 0.979 12 C -0.228 4.228 13 N -0.586 5.586 14 Si 0.898 3.102 15 H -0.218 1.218 16 H -0.164 1.164 17 H -0.202 1.202 18 C -0.145 4.145 19 C -0.167 4.167 20 C -0.137 4.137 21 C -0.200 4.200 22 C 0.235 3.765 23 O -0.329 6.329 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.368 4.667 -11.854 21.540 hybrid contribution -0.797 -0.566 1.521 1.808 sum -18.165 4.101 -10.333 21.297 Atomic orbital electron populations 1.21792 0.89040 1.04350 1.04253 1.23302 0.97852 0.80087 1.01640 1.86554 1.22770 1.32613 1.84027 1.23276 0.80900 0.91763 0.72340 1.90706 1.61248 1.43499 1.44306 1.21484 0.97887 0.89764 0.99890 1.18861 0.88865 0.94499 0.96340 0.95457 1.22220 1.00312 0.97183 1.00502 1.21665 0.93745 1.37956 1.04282 0.97922 1.27008 0.98926 0.93969 1.02944 1.70958 1.37998 1.50989 0.98623 0.83685 0.74124 0.79086 0.73345 1.21785 1.16420 1.20171 1.21846 0.98784 1.00704 0.93160 1.21864 0.92963 1.02272 0.99622 1.21493 1.03473 0.97930 0.90840 1.22404 0.91577 1.03684 1.02295 1.25064 0.92035 0.75112 0.84322 1.90461 1.59547 1.44060 1.38785 0.88578 0.91197 0.89896 0.91466 0.93634 0.94504 0.91213 0.93673 0.94802 0.88871 0.90069 0.89537 0.87899 0.87485 0.91211 0.87379 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.29 71.98 0.74 -1.35 16 2 C 0.04 1.15 6.19 71.98 0.45 1.60 16 3 O -0.34 -10.37 5.70 -51.38 -0.29 -10.66 16 4 C 0.48 19.41 6.14 71.24 0.44 19.85 16 5 O -0.51 -25.98 14.54 21.95 0.32 -25.66 16 6 C -0.09 -3.46 0.29 -53.42 -0.02 -3.48 16 7 C 0.03 1.63 0.91 -11.54 -0.01 1.62 16 8 H 0.03 1.35 6.69 -2.39 -0.02 1.34 16 9 C -0.14 -6.42 8.13 71.99 0.59 -5.83 16 10 C -0.54 -33.15 5.63 25.60 0.14 -33.00 16 11 H 0.00 0.17 6.92 -2.91 -0.02 0.15 16 12 C -0.03 -2.13 5.20 84.66 0.44 -1.69 16 13 N -0.95 -65.60 13.70 21.45 0.29 -65.30 16 14 Si 1.08 55.20 26.43 68.60 1.81 57.01 16 15 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 16 H -0.24 -10.71 6.13 99.48 0.61 -10.10 16 17 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 18 C -0.11 -2.89 4.50 30.67 0.14 -2.75 16 19 C -0.13 -2.43 5.59 30.58 0.17 -2.26 16 20 C -0.10 -1.79 5.94 30.66 0.18 -1.61 16 21 C -0.16 -4.27 5.74 30.11 0.17 -4.09 16 22 C 0.36 14.22 5.03 29.46 0.15 14.37 16 23 O -0.46 -23.03 13.34 -1.46 -0.02 -23.05 16 24 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 28 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 29 H 0.04 1.74 5.44 -2.39 -0.01 1.73 16 30 H 0.07 2.39 6.72 -2.39 -0.02 2.38 16 31 H 0.04 2.08 5.72 -2.39 -0.01 2.07 16 32 H 0.24 17.39 8.73 -92.71 -0.81 16.58 16 33 H 0.09 2.30 6.32 -2.39 -0.02 2.29 16 34 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.09 1.70 5.28 -2.39 -0.01 1.69 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 2.67 6.94 -2.39 -0.02 2.66 16 40 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -85.25 303.75 6.59 -78.66 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.90 Total: 7.60 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.58 Total: -18.62 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 0.29 Total: -65.30 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: 0.01 Total: -59.36 kcal Atomic # 14 Polarization: 55.20 SS G_CDS: 1.81 Total: 57.01 kcal Total: -85.25 6.59 -78.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709465325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.900 kcal (2) G-P(sol) polarization free energy of solvation -85.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds